Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0007792

Physical Location & Seq

Genomic Coordinates Forward (+)

16531179 .. 16531676

Gene Structure 498 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G45150.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 498 bp

ATGGATTCGAAAAATGGAATTAACAACAGCCAAAAGGCAAGAAGGACTCCAAAAGACCGCCATTTGAAAATTGGTGGCCGTGATCGTCGCATTCGGATCCCGCCGAGTGTTGCTCCCCAACTATTTAGATTGACAAAAGAACTCGGCTTTAAAACCGATGGTGAAACTGTCAGTTGGCTCCTCCAGAATGCCGAGCCTGCCATTTTCGCAGCCACGGGACATGGTGTCACCACCACCTCCAATGAAGATATCCAGCCAAATAGGAATTTTCCTAGTTACACCTTTAATGGTGATAATATTAGTAATAACGTTTTCCCTTGTACGGTTGTAAATACTGGTCATCGTCAGATGGTGTTTCCGGTTTCTACAATGACAGATCATGCACCTTCAACTAATTACAGTACTATTAGTGATAATTACAATTCCACCTTTAATGGTAATGCTACCGCCAGTGATACAACATCAGCAGCAACAACAACAGCCACAACCACAGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TCP

Protein Analysis

165

Amino Acids

18.0

Weight (kDa)

9.25

Isoelectric Point (pI)

35.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TCP	PF03634	17 - 84	3.2e-22	TCP family transcription factor

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007792)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G35560 AT1G72010 AT3G45150 AT3G47620 AT5G08330 AT5G23280 AT5G41030
fragaria_vesca	FvH4_4g06720
malus_domestica	MD13G1238400.v1.1 MD16G1243300.v1.1
prunus_persica	Prupe.1G070500_v2.0.a1 Prupe.1G070500_v2.0.a1 Prupe.1G070500_v2.0.a1
pyrus_communis	pycom13g21080 pycom16g20410
rosa_chinensis	RchiOBHm_Chr4g0398661
rosa_laevigata	RLG00000009336
rosa_multiflora	Rmu_co8332803.1_g000001
rosa_rugosa	Rorug04G0010200
rosa_samantha	Rh4AG088200 Rh4BG084800 Rh4CG096400 Rh4DG079600
rosa_wichuraiana	Rw4G007310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	58, 101, 447
AclI	AACGTT	1 cut(s)	309
AclWI	GGATC	2 cut(s)	91, 104
AcoI	YGGCCR	1 cut(s)	76
AcsI	RAATTY	1 cut(s)	265
AfaI	GTAC	2 cut(s)	322, 403
AfiI	CCNNNNNNNGG	1 cut(s)	322
AgsI	TTSAA	2 cut(s)	67, 390
AhdI	GACNNNNNGTC	1 cut(s)	224
AlwI	GGATC	2 cut(s)	91, 104
AoxI	GGCC	1 cut(s)	76
ApeKI	GCWGC	2 cut(s)	209, 467
ApoI	RAATTY	1 cut(s)	265
AsuHPI	GGTGA	3 cut(s)	173, 220, 302
AsuII	TTCGAA	1 cut(s)	8
BamHI	GGATCC	1 cut(s)	96
BbvI	GCAGC	2 cut(s)	221, 479
BccI	CCATC	2 cut(s)	152, 343
BceAI	ACGGC	1 cut(s)	63
BfaI	CTAG	1 cut(s)	273
BisI	GCNGC	2 cut(s)	210, 468
BlsI	GCNGC	2 cut(s)	211, 469
BmcAI	AGTACT	1 cut(s)	403
BmeRI	GACNNNNNGTC	1 cut(s)	224
BmiI	GGNNCC	2 cut(s)	98, 179
BplI	GAGNNNNNCTC	2 cut(s)	97, 129
BpmI	CTGGAG	1 cut(s)	167
Bpu14I	TTCGAA	1 cut(s)	8
BsaJI	CCNNGG	1 cut(s)	213
BsaWI	WCCGGW	1 cut(s)	358
Bsc4I	CCNNNNNNNGG	1 cut(s)	322
Bse1I	ACTGG	2 cut(s)	340, 450
BseDI	CCNNGG	1 cut(s)	213
BseLI	CCNNNNNNNGG	1 cut(s)	322
BseNI	ACTGG	2 cut(s)	340, 450
BseRI	GAGGAG	1 cut(s)	170
BseXI	GCAGC	2 cut(s)	221, 479
BshFI	GGCC	1 cut(s)	78
BsiSI	CCGG	1 cut(s)	359
BslFI	GGGAC	1 cut(s)	231
BslI	CCNNNNNNNGG	1 cut(s)	322
BsmFI	GGGAC	1 cut(s)	231
BsmI	GAATGC	2 cut(s)	90, 193
BsnI	GGCC	1 cut(s)	78
Bsp119I	TTCGAA	1 cut(s)	8
Bsp143I	GATC	3 cut(s)	82, 96, 376
BspACI	CCGC	3 cut(s)	58, 101, 447
BspANI	GGCC	1 cut(s)	78
BspLI	GGNNCC	2 cut(s)	98, 179
BspPI	GGATC	2 cut(s)	91, 104
BspT104I	TTCGAA	1 cut(s)	8
BsrI	ACTGG	2 cut(s)	340, 450
BssECI	CCNNGG	1 cut(s)	213
BssMI	GATC	3 cut(s)	82, 96, 376
Bst4CI	ACNGT	4 cut(s)	169, 325, 401, 493
BstBI	TTCGAA	1 cut(s)	8
BstC8I	GCNNGC	1 cut(s)	198
BstDSI	CCRYGG	1 cut(s)	213
BstKTI	GATC	3 cut(s)	85, 99, 379
BstMBI	GATC	3 cut(s)	82, 96, 376
BstMWI	GCNNNNNNNGC	2 cut(s)	197, 206
BstV1I	GCAGC	2 cut(s)	221, 479
BstX2I	RGATCY	1 cut(s)	96
BstYI	RGATCY	1 cut(s)	96
BsuRI	GGCC	1 cut(s)	78
BtgI	CCRYGG	1 cut(s)	213
BtsIMutI	CAGTG	1 cut(s)	457
Cac8I	GCNNGC	1 cut(s)	198
Csp6I	GTAC	2 cut(s)	321, 402
CviAII	CATG	2 cut(s)	221, 380
CviJI	RGCY	8 cut(s)	30, 78, 147, 178, 196, 212, 256, 482
CviKI_1	RGCY	8 cut(s)	30, 78, 147, 178, 196, 212, 256, 482
CviQI	GTAC	2 cut(s)	321, 402
DpnI	GATC	3 cut(s)	84, 98, 378
DpnII	GATC	3 cut(s)	82, 96, 376
DraI	TTTAAA	1 cut(s)	151
DriI	GACNNNNNGTC	1 cut(s)	224
EaeI	YGGCCR	1 cut(s)	76
Eam1105I	GACNNNNNGTC	1 cut(s)	224
Eco32I	GATATC	1 cut(s)	250
EcoRV	GATATC	1 cut(s)	250
FaeI	CATG	2 cut(s)	224, 383
FaiI	YATR	2 cut(s)	222, 381
FaqI	GGGAC	1 cut(s)	231
FatI	CATG	2 cut(s)	220, 379
FauI	CCCGC	1 cut(s)	108
Fnu4HI	GCNGC	2 cut(s)	210, 468
Fsp4HI	GCNGC	2 cut(s)	210, 468
FspBI	CTAG	1 cut(s)	273
GluI	GCNGC	2 cut(s)	210, 468
GsuI	CTGGAG	1 cut(s)	167
HaeIII	GGCC	1 cut(s)	78
HapII	CCGG	1 cut(s)	359
Hin1II	CATG	2 cut(s)	224, 383
HinfI	GANTC	2 cut(s)	5, 46
HpaII	CCGG	1 cut(s)	359
HphI	GGTGA	3 cut(s)	173, 220, 302
Hpy188I	TCNGA	2 cut(s)	96, 348
Hpy188III	TCNNGA	1 cut(s)	184
Hpy99I	CGWCG	1 cut(s)	90
HpyAV	CCTTC	2 cut(s)	36, 396
HpyCH4III	ACNGT	4 cut(s)	169, 325, 401, 493
HpyCH4IV	ACGT	1 cut(s)	309
HpyCH4V	TGCA	1 cut(s)	383
HpyF10VI	GCNNNNNNNGC	2 cut(s)	197, 206
HpySE526I	ACGT	1 cut(s)	309
Hsp92II	CATG	2 cut(s)	224, 383
Kzo9I	GATC	3 cut(s)	82, 96, 376
LmnI	GCTCC	2 cut(s)	118, 183
LpnPI	CCDG	6 cut(s)	197, 210, 266, 321, 372, 463
Lsp1109I	GCAGC	2 cut(s)	221, 479
MaeI	CTAG	1 cut(s)	273
MaeII	ACGT	1 cut(s)	309
MaeIII	GTNAC	2 cut(s)	226, 275
MalI	GATC	3 cut(s)	84, 98, 378
MboI	GATC	3 cut(s)	82, 96, 376
MboII	GAAGA	1 cut(s)	257
MflI	RGATCY	1 cut(s)	96
MluCI	AATT	6 cut(s)	18, 69, 265, 394, 415, 421
MlyI	GAGTC	1 cut(s)	40
MnlI	CCTC	2 cut(s)	191, 247
MseI	TTAA	4 cut(s)	21, 150, 285, 432
MspI	CCGG	1 cut(s)	359
Mva1269I	GAATGC	2 cut(s)	90, 193
MwoI	GCNNNNNNNGC	2 cut(s)	197, 206
NdeII	GATC	3 cut(s)	82, 96, 376
NlaIII	CATG	2 cut(s)	224, 383
NlaIV	GGNNCC	2 cut(s)	98, 179
NmeAIII	GCCGAG	3 cut(s)	123, 129, 217
NmuCI	GTSAC	1 cut(s)	226
NspV	TTCGAA	1 cut(s)	8
PctI	GAATGC	2 cut(s)	90, 193
PfeI	GAWTC	1 cut(s)	5
PkrI	GCNGC	2 cut(s)	211, 469
PleI	GAGTC	1 cut(s)	40
PpsI	GAGTC	1 cut(s)	40
Psp1406I	AACGTT	1 cut(s)	309
PspN4I	GGNNCC	2 cut(s)	98, 179
PsuI	RGATCY	1 cut(s)	96
RsaI	GTAC	2 cut(s)	322, 403
RsaNI	GTAC	2 cut(s)	321, 402
SaqAI	TTAA	4 cut(s)	21, 150, 285, 432
SatI	GCNGC	2 cut(s)	210, 468
Sau3AI	GATC	3 cut(s)	82, 96, 376
ScaI	AGTACT	1 cut(s)	403
SchI	GAGTC	1 cut(s)	40
SetI	ASST	5 cut(s)	239, 284, 312, 388, 431
SfuI	TTCGAA	1 cut(s)	8
Sse9I	AATT	6 cut(s)	18, 69, 265, 394, 415, 421
SsiI	CCGC	3 cut(s)	58, 101, 447
SspI	AATATT	1 cut(s)	298
SspMI	CTAG	1 cut(s)	273
TaaI	ACNGT	4 cut(s)	169, 325, 401, 493
TaiI	ACGT	1 cut(s)	312
TaqI	TCGA	1 cut(s)	8
TasI	AATT	6 cut(s)	18, 69, 265, 394, 415, 421
TatI	WGTACW	1 cut(s)	401
TfiI	GAWTC	1 cut(s)	5
Tru1I	TTAA	4 cut(s)	21, 150, 285, 432
Tru9I	TTAA	4 cut(s)	21, 150, 285, 432
TscAI	CASTG	1 cut(s)	457
TseFI	GTSAC	1 cut(s)	226
TseI	GCWGC	2 cut(s)	209, 467
Tsp45I	GTSAC	1 cut(s)	226
TspDTI	ATGAA	1 cut(s)	258
TspRI	CASTG	1 cut(s)	457
XapI	RAATTY	1 cut(s)	265
XcmI	CCANNNNNNNNNTGG	1 cut(s)	68
XspI	CTAG	1 cut(s)	273
ZrmI	AGTACT	1 cut(s)	403

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.