AT3G47620
TCP Family

Transcription factor

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
Physical Location & Seq
Forward (+)
17558793 .. 17561259
2467 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G47620.1

Sequence Viewer

Length: 1470 bp
ATGCAAAAGCCAACATCAAGTATCTTAAATGTCATAATGGACGGTGGAGACAGCGTCGGAGGAGGAGGAGGAGATGATCACCACCGTCACCTCCACCATCACCACCGCCCTACTTTCCCTTTTCAACTACTCGGAAAACACGACCCCGACGACAACCATCAACAACAACCTTCCCCTTCCTCCTCCTCCTCTCTATTTTCTCTCCATCAACACCAACAATTATCTCAATCGCAACCTCAATCGCAATCGCAAAAGTCACAACCGCAGACAACGCAAAAAGAGTTATTACAAACGCAAGAGGAATCTGCGGTGGTGGCAGCTAAAAAGCCACCGTTGAAACGAGCGTCGACGAAAGACCGACACACGAAAGTAGACGGAAGAGGGAGGAGAATAAGGATGCCGGCGTTATGTGCAGCTAGGGTTTTTCAGCTAACGCGAGAGCTAGGTCATAAATCCGACGGTGAGACAATAGAGTGGCTTCTTCAACAAGCTGAACCATCTGTAATCGCCGCCACCGGAACCGGAACAATCCCGGCGAATTTCACTTCTTTAAACATCTCTCTCCGTTCTTCAGGCTCTTCCATGTCTCTTCCTTCTCATTTCCGCTCCGCCGCTTCCACTTTTAGCCCTAATAACATATTTTCTCCGGCGATGCTTCAACAACAACAACAACAACAACGTGGTGGTGGTGTTGGGTTTCATCATCCCCATCTACAGGGACGTGCACCTACGTCGTCTTTGTTTCCTGGTATTGATAACTTCACACCAACGACGTCGTTTTTGAACTTTCATAATCCAACAAAGCAAGAAGGAGATCAAGATTCTGAAGAGTTAAACTCGGAGAAGAAAAGAAGAATCCAAACGACGTCGGATTTGCATCAACAACAACAACAACACCAACATGATCAAATCGGAGGATATACACTTCAATCTAGCAACAGTGGATCTACAGCCACCGCAGCCGCCGCGCAACAAATACCGGGAAATTTCTGGATGGTTGCGGCGGCTGCGGCTGCAGGTGGTGGTGGTGGTAATAACAACCAAACAGGTGGTCTTATGACAGCTTCTATTGGTACTGGTGGCGGCGGTGGAGAGCCTGTTTGGACGTTTCCTTCCATTAACACGGCAGCGGCAGCGTTATATAGAAGTGGCGTTTCGGGCGTTCCAAGCGGCGCGGTTTCTAGCGGTTTACATTTTATGAATTTCGCAGCGCCAATGGCATTTCTTACTGGACAACAACAGCTAGCAACAACTAGTAATCATGAGATTAATGAAGATAGTAATAATAATGAAGGAGGAAGAAGTGACGGTGGTGGTGATCATCATAATACACAGAGACATCATCATCATCAACAACAACATCATCATAATATTCTCTCCGGCTTGAACCAGTACGGACGGCAAGTTTCCGGCGACTCTCAAGCTAGTGGATCACTTGGAGGTGGTGATGAGGAGGATCAGCAAGATTAG

Protein Analysis

489

Amino Acids

52.3

Weight (kDa)

6.61

Isoelectric Point (pI)

66.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TCP PF03634 116 - 298 3e-34 TCP family transcription factor
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1007
AatII GACGTC 2 cut(s) 776, 869
Acc36I ACCTGC 1 cut(s) 1007
AccBSI CCGCTC 1 cut(s) 606
AccI GTMKAC 2 cut(s) 347, 372
AccII CGCG 3 cut(s) 436, 968, 1175
AclWI GGATC 3 cut(s) 952, 1438, 1464
AcsI RAATTY 3 cut(s) 538, 985, 1201
AcuI CTGAAG 2 cut(s) 555, 846
AcyI GRCGYC 2 cut(s) 773, 866
AfaI GTAC 2 cut(s) 1075, 1394
AfiI CCNNNNNNNGG 1 cut(s) 715
AgsI TTSAA 7 cut(s) 125, 337, 485, 659, 784, 929, 1387
AhlI ACTAGT 1 cut(s) 1253
AjiI CACGTC 1 cut(s) 722
AjnI CCWGG 1 cut(s) 745
AluBI AGCT 8 cut(s) 320, 416, 430, 442, 491, 1064, 1243, 1424
AluI AGCT 8 cut(s) 320, 416, 430, 442, 491, 1064, 1243, 1424
Alw21I GWGCWC 1 cut(s) 727
Alw26I GTCTC 4 cut(s) 42, 458, 591, 1330
Alw44I GTGCAC 1 cut(s) 723
AlwI GGATC 3 cut(s) 952, 1438, 1464
ApaLI GTGCAC 1 cut(s) 723
ApeKI GCWGC 8 cut(s) 317, 413, 959, 1007, 1013, 1127, 1133, 1208
ApoI RAATTY 3 cut(s) 538, 985, 1201
ArsI GACNNNNNNTTYG 6 cut(s) 763, 795, 856, 888, 1036, 1068
AseI ATTAAT 1 cut(s) 1269
AspLEI GCGC 3 cut(s) 970, 1175, 1213
AsuC2I CCSGG 2 cut(s) 533, 981
AsuHPI GGTGA 6 cut(s) 71, 80, 92, 473, 1328, 1457
AsuNHI GCTAGC 1 cut(s) 1243
BaeGI GKGCMC 1 cut(s) 727
Bbv12I GWGCWC 1 cut(s) 727
BbvI GCAGC 8 cut(s) 329, 425, 971, 994, 1000, 1139, 1145, 1220
BccI CCATC 6 cut(s) 105, 165, 213, 505, 717, 988
BceAI ACGGC 2 cut(s) 1140, 1415
BcgI CGANNNNNNTGC 2 cut(s) 714, 748
BciT130I CCWGG 1 cut(s) 747
BclI TGATCA 3 cut(s) 76, 904, 1318
BcnI CCSGG 2 cut(s) 533, 981
BcoDI GTCTC 4 cut(s) 42, 458, 591, 1330
BcuI ACTAGT 1 cut(s) 1253
BfaI CTAG 7 cut(s) 417, 443, 933, 1182, 1244, 1254, 1425
BfmI CTRYAG 3 cut(s) 713, 948, 1014
BfoI RGCGCY 1 cut(s) 1214
BfuAI ACCTGC 1 cut(s) 1007
Bme1390I CCNGG 3 cut(s) 533, 747, 981
BmgBI CACGTC 1 cut(s) 722
BmiI GGNNCC 1 cut(s) 520
BmrFI CCNGG 3 cut(s) 533, 747, 981
BmsI GCATC 3 cut(s) 387, 642, 886
BmtI GCTAGC 1 cut(s) 1247
BplI GAGNNNNNCTC 2 cut(s) 821, 853
BpuEI CTTGAG 1 cut(s) 1404
BpuMI CCSGG 2 cut(s) 533, 981
BsaBI GATNNNNATC 1 cut(s) 876
BsaHI GRCGYC 2 cut(s) 773, 866
BsaWI WCCGGW 2 cut(s) 515, 521
BsaXI ACNNNNNCTCC 4 cut(s) 39, 69, 1083, 1113
Bsc4I CCNNNNNNNGG 1 cut(s) 715
Bse118I RCCGGY 1 cut(s) 400
Bse1I ACTGG 3 cut(s) 1081, 1234, 1390
Bse8I GATNNNNATC 1 cut(s) 876
BseBI CCWGG 1 cut(s) 747
BseGI GGATG 3 cut(s) 402, 703, 999
BseJI GATNNNNATC 1 cut(s) 876
BseLI CCNNNNNNNGG 1 cut(s) 715
BseNI ACTGG 3 cut(s) 1081, 1234, 1390
BseRI GAGGAG 9 cut(s) 75, 78, 81, 84, 172, 175, 178, 400, 1466
BseSI GKGCMC 1 cut(s) 727
BseXI GCAGC 8 cut(s) 329, 425, 971, 994, 1000, 1139, 1145, 1220
BsgI GTGCAG 1 cut(s) 432
Bsh1236I CGCG 3 cut(s) 436, 968, 1175
BsiHKAI GWGCWC 1 cut(s) 727
BsiSI CCGG 8 cut(s) 401, 516, 522, 533, 647, 980, 1380, 1410
BslFI GGGAC 1 cut(s) 732
BslI CCNNNNNNNGG 1 cut(s) 715
BsmAI GTCTC 4 cut(s) 42, 458, 591, 1330
BsmFI GGGAC 1 cut(s) 732
Bsp1286I GDGCHC 1 cut(s) 727
Bsp143I GATC 7 cut(s) 76, 814, 904, 944, 1318, 1430, 1456
BspFNI CGCG 3 cut(s) 436, 968, 1175
BspHI TCATGA 1 cut(s) 1261
BspLI GGNNCC 1 cut(s) 520
BspMAI CTGCAG 1 cut(s) 1018
BspMI ACCTGC 1 cut(s) 1007
BspOI GCTAGC 1 cut(s) 1247
BspPI GGATC 3 cut(s) 952, 1438, 1464
BspQI GCTCTTC 1 cut(s) 583
BsrBI CCGCTC 1 cut(s) 606
BsrFI RCCGGY 1 cut(s) 400
BsrI ACTGG 3 cut(s) 1081, 1234, 1390
BssAI RCCGGY 1 cut(s) 400
BssMI GATC 7 cut(s) 76, 814, 904, 944, 1318, 1430, 1456
BssNI GRCGYC 2 cut(s) 773, 866
Bst2UI CCWGG 1 cut(s) 747
Bst4CI ACNGT 6 cut(s) 44, 86, 333, 461, 941, 1310
Bst6I CTCTTC 4 cut(s) 373, 583, 594, 822
BstACI GRCGYC 2 cut(s) 773, 866
BstC8I GCNNGC 2 cut(s) 402, 1245
BstF5I GGATG 3 cut(s) 402, 703, 999
BstFNI CGCG 3 cut(s) 436, 968, 1175
BstH2I RGCGCY 1 cut(s) 1214
BstHHI GCGC 3 cut(s) 970, 1175, 1213
BstKTI GATC 7 cut(s) 79, 817, 907, 947, 1321, 1433, 1459
BstMAI GTCTC 4 cut(s) 42, 458, 591, 1330
BstMBI GATC 7 cut(s) 76, 814, 904, 944, 1318, 1430, 1456
BstNI CCWGG 1 cut(s) 747
BstSCI CCNGG 3 cut(s) 531, 745, 979
BstSFI CTRYAG 3 cut(s) 713, 948, 1014
BstSLI GKGCMC 1 cut(s) 727
BstUI CGCG 3 cut(s) 436, 968, 1175
BstV1I GCAGC 8 cut(s) 329, 425, 971, 994, 1000, 1139, 1145, 1220
BstX2I RGATCY 1 cut(s) 944
BstXI CCANNNNNNTGG 1 cut(s) 1049
BstYI RGATCY 1 cut(s) 944
BtgZI GCGATG 1 cut(s) 665
BtrI CACGTC 1 cut(s) 722
BtsCI GGATG 3 cut(s) 402, 703, 999
BtsIMutI CAGTG 1 cut(s) 946
BveI ACCTGC 1 cut(s) 1007
Cac8I GCNNGC 2 cut(s) 402, 1245
CciI TCATGA 1 cut(s) 1261
CfoI GCGC 3 cut(s) 970, 1175, 1213
Cfr10I RCCGGY 1 cut(s) 400
CseI GACGC 2 cut(s) 43, 333
Csp6I GTAC 2 cut(s) 1074, 1393
CviAII CATG 3 cut(s) 583, 902, 1262
CviQI GTAC 2 cut(s) 1074, 1393
DpnI GATC 7 cut(s) 78, 816, 906, 946, 1320, 1432, 1458
DpnII GATC 7 cut(s) 76, 814, 904, 944, 1318, 1430, 1456
DraI TTTAAA 1 cut(s) 552
Eam1104I CTCTTC 4 cut(s) 373, 583, 594, 822
EarI CTCTTC 4 cut(s) 373, 583, 594, 822
EciI GGCGGA 1 cut(s) 598
Eco57I CTGAAG 2 cut(s) 555, 846
EcoRII CCWGG 1 cut(s) 745
FaeI CATG 3 cut(s) 586, 905, 1265
FaqI GGGAC 1 cut(s) 732
FatI CATG 3 cut(s) 582, 901, 1261
FbaI TGATCA 3 cut(s) 76, 904, 1318
FblI GTMKAC 2 cut(s) 347, 372
FokI GGATG 3 cut(s) 409, 690, 1006
FspBI CTAG 7 cut(s) 417, 443, 933, 1182, 1244, 1254, 1425
GlaI GCGC 3 cut(s) 969, 1174, 1212
HaeII RGCGCY 1 cut(s) 1214
HapII CCGG 8 cut(s) 401, 516, 522, 533, 647, 980, 1380, 1410
HgaI GACGC 2 cut(s) 43, 333
HhaI GCGC 3 cut(s) 970, 1175, 1213
Hin1I GRCGYC 2 cut(s) 773, 866
Hin1II CATG 3 cut(s) 586, 905, 1265
Hin6I GCGC 3 cut(s) 968, 1173, 1211
HinP1I GCGC 3 cut(s) 968, 1173, 1211
HincII GTYRAC 1 cut(s) 348
HindII GTYRAC 1 cut(s) 348
HinfI GANTC 4 cut(s) 302, 821, 855, 1415
HpaII CCGG 8 cut(s) 401, 516, 522, 533, 647, 980, 1380, 1410
HphI GGTGA 6 cut(s) 71, 80, 92, 473, 1328, 1457
Hpy166II GTNNAC 4 cut(s) 348, 373, 725, 1190
Hpy188I TCNGA 7 cut(s) 59, 134, 457, 826, 841, 871, 914
Hpy188III TCNNGA 3 cut(s) 818, 991, 1262
Hpy8I GTNNAC 4 cut(s) 348, 373, 725, 1190
HpyAV CCTTC 6 cut(s) 180, 186, 603, 803, 1122, 1286
HpyCH4III ACNGT 6 cut(s) 44, 86, 333, 461, 941, 1310
HpyCH4IV ACGT 6 cut(s) 679, 721, 731, 773, 866, 1106
HpyCH4V TGCA 5 cut(s) 4, 413, 725, 877, 1016
HpySE526I ACGT 6 cut(s) 679, 721, 731, 773, 866, 1106
Hsp92I GRCGYC 2 cut(s) 773, 866
Hsp92II CATG 3 cut(s) 586, 905, 1265
HspAI GCGC 3 cut(s) 968, 1173, 1211
KroI GCCGGC 1 cut(s) 400
KroNI GCCGGC 1 cut(s) 402
Ksp22I TGATCA 3 cut(s) 76, 904, 1318
Kzo9I GATC 7 cut(s) 76, 814, 904, 944, 1318, 1430, 1456
LguI GCTCTTC 1 cut(s) 583
LmnI GCTCC 1 cut(s) 611
Lsp1109I GCAGC 8 cut(s) 329, 425, 971, 994, 1000, 1139, 1145, 1220
LweI GCATC 3 cut(s) 387, 642, 886
MaeI CTAG 7 cut(s) 417, 443, 933, 1182, 1244, 1254, 1425
MaeII ACGT 6 cut(s) 679, 721, 731, 773, 866, 1106
MaeIII GTNAC 3 cut(s) 86, 255, 1304
MalI GATC 7 cut(s) 78, 816, 906, 946, 1320, 1432, 1458
MbiI CCGCTC 1 cut(s) 606
MboI GATC 7 cut(s) 76, 814, 904, 944, 1318, 1430, 1456
MflI RGATCY 1 cut(s) 944
MhlI GDGCHC 1 cut(s) 727
MluCI AATT 4 cut(s) 218, 538, 985, 1201
MlyI GAGTC 1 cut(s) 1409
MmeI TCCRAC 4 cut(s) 37, 480, 821, 849
MroNI GCCGGC 1 cut(s) 400
MseI TTAA 5 cut(s) 26, 551, 833, 1119, 1269
MslI CAYNNNNRTG 1 cut(s) 900
MspA1I CMGCKG 1 cut(s) 1130
MspI CCGG 8 cut(s) 401, 516, 522, 533, 647, 980, 1380, 1410
MspR9I CCNGG 3 cut(s) 533, 747, 981
MvaI CCWGG 1 cut(s) 747
MvnI CGCG 3 cut(s) 436, 968, 1175
NaeI GCCGGC 1 cut(s) 402
NciI CCSGG 2 cut(s) 533, 981
NdeII GATC 7 cut(s) 76, 814, 904, 944, 1318, 1430, 1456
NgoMIV GCCGGC 1 cut(s) 400
NheI GCTAGC 1 cut(s) 1243
NlaIII CATG 3 cut(s) 586, 905, 1265
NlaIV GGNNCC 1 cut(s) 520
NmuCI GTSAC 3 cut(s) 86, 255, 1304
PagI TCATGA 1 cut(s) 1261
PaqCI CACCTGC 1 cut(s) 1007
PciSI GCTCTTC 1 cut(s) 583
PcsI WCGNNNNNNNCGW 2 cut(s) 138, 147
PdiI GCCGGC 1 cut(s) 402
PfeI GAWTC 3 cut(s) 302, 821, 855
PflFI GACNNNGTC 1 cut(s) 53
PleI GAGTC 1 cut(s) 1409
PpsI GAGTC 1 cut(s) 1409
PshBI ATTAAT 1 cut(s) 1269
Psp6I CCWGG 1 cut(s) 745
PspGI CCWGG 1 cut(s) 745
PspN4I GGNNCC 1 cut(s) 520
PstI CTGCAG 1 cut(s) 1018
PsuI RGATCY 1 cut(s) 944
PsyI GACNNNGTC 1 cut(s) 53
RsaI GTAC 2 cut(s) 1075, 1394
RsaNI GTAC 2 cut(s) 1074, 1393
RseI CAYNNNNRTG 1 cut(s) 900
SalI GTCGAC 1 cut(s) 346
SapI GCTCTTC 1 cut(s) 583
SaqAI TTAA 5 cut(s) 26, 551, 833, 1119, 1269
Sau3AI GATC 7 cut(s) 76, 814, 904, 944, 1318, 1430, 1456
SchI GAGTC 1 cut(s) 1409
ScrFI CCNGG 3 cut(s) 533, 747, 981
SduI GDGCHC 1 cut(s) 727
SfaNI GCATC 3 cut(s) 387, 642, 886
SfcI CTRYAG 3 cut(s) 713, 948, 1014
SgrDI CGTCGACG 1 cut(s) 346
SmiMI CAYNNNNRTG 1 cut(s) 900
SmlI CTYRAG 1 cut(s) 1419
SmoI CTYRAG 1 cut(s) 1419
SpeI ACTAGT 1 cut(s) 1253
Sse9I AATT 4 cut(s) 218, 538, 985, 1201
SspI AATATT 1 cut(s) 1372
SspMI CTAG 7 cut(s) 417, 443, 933, 1182, 1244, 1254, 1425
StyD4I CCNGG 3 cut(s) 531, 745, 979
TaaI ACNGT 6 cut(s) 44, 86, 333, 461, 941, 1310
TaiI ACGT 6 cut(s) 682, 724, 734, 776, 869, 1109
TaqI TCGA 1 cut(s) 347
TaqII GACCGA 1 cut(s) 372
TasI AATT 4 cut(s) 218, 538, 985, 1201
TfiI GAWTC 3 cut(s) 302, 821, 855
Tru1I TTAA 5 cut(s) 26, 551, 833, 1119, 1269
Tru9I TTAA 5 cut(s) 26, 551, 833, 1119, 1269
TscAI CASTG 1 cut(s) 946
TseFI GTSAC 3 cut(s) 86, 255, 1304
TseI GCWGC 8 cut(s) 317, 413, 959, 1007, 1013, 1127, 1133, 1208
Tsp45I GTSAC 3 cut(s) 86, 255, 1304
TspDTI ATGAA 5 cut(s) 689, 779, 1214, 1287, 1305
TspGWI ACGGA 3 cut(s) 390, 554, 1410
TspRI CASTG 1 cut(s) 946
Tth111I GACNNNGTC 1 cut(s) 53
VneI GTGCAC 1 cut(s) 723
VspI ATTAAT 1 cut(s) 1269
XapI RAATTY 3 cut(s) 538, 985, 1201
XmiI GTMKAC 2 cut(s) 347, 372
XspI CTAG 7 cut(s) 417, 443, 933, 1182, 1244, 1254, 1425
ZraI GACGTC 2 cut(s) 774, 867
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.