FvH4_4g06720
TCP Family

Transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0007792
Physical Location & Seq
Reverse (-)
6026222 .. 6027304
1083 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g06720.t1

Sequence Viewer

Length: 1083 bp
ATGAAAAGCGGGCCCCACCTCCCATGTGCCCCTCCTCTGTCTCCACCAGCTCCTGTCTGGACCTCAATGATTAGAGAAGAGCTGTGTTTCCCTCAGCCCCCTCACTCCCCCTTTCCTTCCTCCTCAGCCTCTCTCTCTCTCTCTCTCTATCCCCCACAGCCGACCCTCCCTTTCTCTCTTCCAACTGGGCTCGCCGCACGCACGGCCGTATCATATCGATCAGTCTCAATGTCTAATTCCGAGGCTCCCAATAACGAGCAGCTCTCCAATGGAGCCGCGGCTGCAGCCATGATGATGGAAAGGCAGCAACAACAGCAGCAGACCCAGCAACAGCAAACGGCGCAGCAACCCTCCTCTAACGGCGTCTTGGCCGTCAAGAAGCCGCCCTCCAAGGACCGTCACAGCAAAGTCGACGGCCGCGGCCGCCGCATCCGCATGCCCATCATCTGCGCCGCTCGTGTCTTCCAGCTCACACGTGAGCTCGGCCACAAGTCCGACGGCCAGACCATCGAGTGGCTCCTCCGTCAGGCCGAGCCCTCCATCATCGCCGCCACCGGAACTGGAACCACTCCCGCTAGCTTCTCCACCGTCTCCGTCTCCCTCCGCGGCGGCGCCTCCACCGCCACCTCTCTTTCCAACTCCTCCACTACCACCTCCTCCGACCACAAGCCCCTCCTCGGCGGCGGCGGCCCCACCCCCTTCATCCTCGGTAAGCGCATGCGCACCGACGACGACGGCAAGGATTCCGACAACCACCACGGCGGAAACGACGGAGGAGGAGCGGTGTCGGTCGTCGGTCACCACTCCATGAGCTCCATGCTGGGCCCTGCCGCCGCAGCCCAAGGAGGGTTCTGGGCGCCGCACTTCGGGCAAGTCTGGAGCTTCGCCGCGACGCCGCCGCCGGAGTTGATGAGTCAGCAGCAGTCGGTGTCGCAACAGCATTCGTTGTTCTTGCAGCAGCAGCCGATGGGGGAAGCGTCGGCGGCCAGAGTGGGAAATTACCTTCCAGGCCATCTCAATTTGTTGGCTTCTTTGTCGGGCGGGCACGGCAATTCGGGTCGGAGAGAAGATGACCCGCGTTGA

Protein Analysis

361

Amino Acids

37.94

Weight (kDa)

9.3

Isoelectric Point (pI)

57.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TCP PF03634 130 - 217 4.3e-29 TCP family transcription factor
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 722
AccB1I GGYRCC 2 cut(s) 611, 856
AccB7I CCANNNNNTGG 1 cut(s) 513
AccBSI CCGCTC 2 cut(s) 455, 782
AccI GTMKAC 1 cut(s) 411
AccII CGCG 5 cut(s) 278, 420, 606, 890, 1078
AcoI YGGCCR 7 cut(s) 204, 369, 415, 421, 484, 499, 984
AcvI CACGTG 1 cut(s) 476
AcyI GRCGYC 4 cut(s) 363, 612, 857, 893
AfiI CCNNNNNNNGG 5 cut(s) 513, 526, 677, 846, 866
AflIII ACRYGT 1 cut(s) 473
AjnI CCWGG 1 cut(s) 1006
AluBI AGCT 8 cut(s) 50, 82, 262, 469, 481, 579, 813, 882
AluI AGCT 8 cut(s) 50, 82, 262, 469, 481, 579, 813, 882
Alw21I GWGCWC 2 cut(s) 483, 815
Alw26I GTCTC 4 cut(s) 45, 229, 595, 601
AlwNI CAGNNNCTG 1 cut(s) 53
ApaI GGGCCC 2 cut(s) 15, 827
AspLEI GCGC 6 cut(s) 343, 452, 614, 717, 723, 859
AspS9I GGNCC 7 cut(s) 11, 12, 60, 394, 689, 823, 824
AsuHPI GGTGA 1 cut(s) 791
AsuNHI GCTAGC 1 cut(s) 575
AvaII GGWCC 2 cut(s) 60, 394
BaeGI GKGCMC 4 cut(s) 15, 31, 827, 1047
BaeI ACNNNNGTAYC 2 cut(s) 192, 225
BanI GGYRCC 2 cut(s) 611, 856
BanII GRGCYC 6 cut(s) 15, 192, 483, 537, 815, 827
BauI CACGAG 1 cut(s) 456
BbrPI CACGTG 1 cut(s) 476
BbsI GAAGAC 1 cut(s) 454
Bbv12I GWGCWC 2 cut(s) 483, 815
BbvCI CCTCAGC 2 cut(s) 93, 124
BccI CCATC 6 cut(s) 289, 449, 515, 548, 961, 1020
BciT130I CCWGG 1 cut(s) 1008
BcoDI GTCTC 4 cut(s) 45, 229, 595, 601
BfaI CTAG 1 cut(s) 576
BfmI CTRYAG 1 cut(s) 282
BfoI RGCGCY 2 cut(s) 615, 860
Bme1390I CCNGG 1 cut(s) 1008
Bme18I GGWCC 2 cut(s) 60, 394
BmgT120I GGNCC 7 cut(s) 11, 12, 60, 394, 689, 823, 824
BmrFI CCNGG 1 cut(s) 1008
BmrI ACTGGG 1 cut(s) 195
BmsI GCATC 1 cut(s) 438
BmtI GCTAGC 1 cut(s) 579
BmuI ACTGGG 1 cut(s) 195
BpiI GAAGAC 1 cut(s) 454
BplI GAGNNNNNCTC 2 cut(s) 248, 280
BpmI CTGGAG 1 cut(s) 898
Bpu10I CCTNAGC 2 cut(s) 93, 124
Bsa29I ATCGAT 1 cut(s) 217
BsaAI YACGTR 1 cut(s) 476
BsaHI GRCGYC 4 cut(s) 363, 612, 857, 893
BsaJI CCNNGG 9 cut(s) 240, 276, 390, 418, 604, 676, 706, 757, 841
BsaWI WCCGGW 1 cut(s) 554
BsaXI ACNNNNNCTCC 2 cut(s) 768, 798
Bsc4I CCNNNNNNNGG 5 cut(s) 513, 526, 677, 846, 866
Bse1I ACTGG 2 cut(s) 190, 565
BseBI CCWGG 1 cut(s) 1008
BseCI ATCGAT 1 cut(s) 217
BseDI CCNNGG 9 cut(s) 240, 276, 390, 418, 604, 676, 706, 757, 841
BseGI GGATG 2 cut(s) 429, 702
BseLI CCNNNNNNNGG 5 cut(s) 513, 526, 677, 846, 866
BseMII CTCAG 2 cut(s) 107, 138
BseNI ACTGG 2 cut(s) 190, 565
BseRI GAGGAG 9 cut(s) 24, 112, 343, 509, 631, 646, 665, 789, 792
BseSI GKGCMC 4 cut(s) 15, 31, 827, 1047
BseX3I CGGCCG 3 cut(s) 204, 415, 421
BseYI CCCAGC 2 cut(s) 324, 820
Bsh1236I CGCG 5 cut(s) 278, 420, 606, 890, 1078
Bsh1285I CGRYCG 4 cut(s) 207, 418, 424, 792
BshNI GGYRCC 2 cut(s) 611, 856
BshVI ATCGAT 1 cut(s) 217
BsiEI CGRYCG 4 cut(s) 207, 418, 424, 792
BsiHKAI GWGCWC 2 cut(s) 483, 815
BsiSI CCGG 2 cut(s) 555, 902
BslI CCNNNNNNNGG 5 cut(s) 513, 526, 677, 846, 866
BsmAI GTCTC 4 cut(s) 45, 229, 595, 601
BsmBI CGTCTC 2 cut(s) 595, 601
BsmI GAATGC 1 cut(s) 940
Bsp120I GGGCCC 2 cut(s) 11, 823
Bsp1286I GDGCHC 8 cut(s) 15, 31, 192, 483, 537, 815, 827, 1047
Bsp143I GATC 1 cut(s) 218
BspCNI CTCAG 2 cut(s) 106, 137
BspDI ATCGAT 1 cut(s) 217
BspFNI CGCG 5 cut(s) 278, 420, 606, 890, 1078
BspMAI CTGCAG 1 cut(s) 286
BspOI GCTAGC 1 cut(s) 579
BspQI GCTCTTC 1 cut(s) 72
BspT107I GGYRCC 2 cut(s) 611, 856
BsrBI CCGCTC 2 cut(s) 455, 782
BsrI ACTGG 2 cut(s) 190, 565
BssECI CCNNGG 9 cut(s) 240, 276, 390, 418, 604, 676, 706, 757, 841
BssMI GATC 1 cut(s) 218
BssNI GRCGYC 4 cut(s) 363, 612, 857, 893
BssSI CACGAG 1 cut(s) 456
BssT1I CCWWGG 2 cut(s) 390, 841
Bst2BI CACGAG 1 cut(s) 456
Bst2UI CCWGG 1 cut(s) 1008
Bst4CI ACNGT 2 cut(s) 398, 589
Bst6I CTCTTC 2 cut(s) 72, 183
BstACI GRCGYC 4 cut(s) 363, 612, 857, 893
BstBAI YACGTR 1 cut(s) 476
BstC8I GCNNGC 7 cut(s) 11, 192, 199, 437, 577, 719, 1043
BstDEI CTNAG 2 cut(s) 93, 124
BstDSI CCRYGG 4 cut(s) 276, 418, 604, 757
BstEII GGTNACC 1 cut(s) 797
BstENI CCTNNNNNAGG 1 cut(s) 524
BstF5I GGATG 2 cut(s) 429, 702
BstFNI CGCG 5 cut(s) 278, 420, 606, 890, 1078
BstH2I RGCGCY 2 cut(s) 615, 860
BstHHI GCGC 6 cut(s) 343, 452, 614, 717, 723, 859
BstKTI GATC 1 cut(s) 221
BstMAI GTCTC 4 cut(s) 45, 229, 595, 601
BstMBI GATC 1 cut(s) 218
BstMCI CGRYCG 4 cut(s) 207, 418, 424, 792
BstNI CCWGG 1 cut(s) 1008
BstNSI RCATGY 2 cut(s) 439, 721
BstPI GGTNACC 1 cut(s) 797
BstSCI CCNGG 1 cut(s) 1006
BstSFI CTRYAG 1 cut(s) 282
BstSLI GKGCMC 4 cut(s) 15, 31, 827, 1047
BstUI CGCG 5 cut(s) 278, 420, 606, 890, 1078
BstV2I GAAGAC 1 cut(s) 454
BstXI CCANNNNNNTGG 1 cut(s) 295
BstZI CGGCCG 3 cut(s) 204, 415, 421
Bsu15I ATCGAT 1 cut(s) 217
BsuTUI ATCGAT 1 cut(s) 217
BtgI CCRYGG 4 cut(s) 276, 418, 604, 757
BtgZI GCGATG 1 cut(s) 529
BtsCI GGATG 2 cut(s) 429, 702
Cac8I GCNNGC 7 cut(s) 11, 192, 199, 437, 577, 719, 1043
CaiI CAGNNNCTG 1 cut(s) 53
CciNI GCGGCCGC 1 cut(s) 421
CfoI GCGC 6 cut(s) 343, 452, 614, 717, 723, 859
Cfr13I GGNCC 7 cut(s) 11, 12, 60, 394, 689, 823, 824
Cfr42I CCGCGG 3 cut(s) 279, 421, 607
ClaI ATCGAT 1 cut(s) 217
CseI GACGC 3 cut(s) 352, 901, 966
CviAII CATG 6 cut(s) 24, 289, 436, 718, 808, 817
DdeI CTNAG 2 cut(s) 93, 124
DinI GGCGCC 2 cut(s) 613, 858
DpnI GATC 1 cut(s) 220
DpnII GATC 1 cut(s) 218
EaeI YGGCCR 7 cut(s) 204, 369, 415, 421, 484, 499, 984
EagI CGGCCG 3 cut(s) 204, 415, 421
Eam1104I CTCTTC 2 cut(s) 72, 183
EarI CTCTTC 2 cut(s) 72, 183
EciI GGCGGA 1 cut(s) 777
Ecl136II GAGCTC 2 cut(s) 481, 813
EclXI CGGCCG 3 cut(s) 204, 415, 421
Eco130I CCWWGG 2 cut(s) 390, 841
Eco24I GRGCYC 6 cut(s) 15, 192, 483, 537, 815, 827
Eco47I GGWCC 2 cut(s) 60, 394
Eco52I CGGCCG 3 cut(s) 204, 415, 421
Eco53kI GAGCTC 2 cut(s) 481, 813
Eco72I CACGTG 1 cut(s) 476
Eco91I GGTNACC 1 cut(s) 797
EcoICRI GAGCTC 2 cut(s) 481, 813
EcoNI CCTNNNNNAGG 1 cut(s) 524
EcoO109I RGGNCCY 2 cut(s) 12, 824
EcoO65I GGTNACC 1 cut(s) 797
EcoRII CCWGG 1 cut(s) 1006
EcoT14I CCWWGG 2 cut(s) 390, 841
EcoT38I GRGCYC 6 cut(s) 15, 192, 483, 537, 815, 827
EgeI GGCGCC 2 cut(s) 613, 858
EheI GGCGCC 2 cut(s) 613, 858
ErhI CCWWGG 2 cut(s) 390, 841
Esp3I CGTCTC 2 cut(s) 595, 601
FaeI CATG 6 cut(s) 27, 292, 439, 721, 811, 820
FaiI YATR 7 cut(s) 25, 214, 290, 437, 719, 809, 818
FatI CATG 6 cut(s) 23, 288, 435, 717, 807, 816
FauI CCCGC 3 cut(s) 2, 580, 1034
FblI GTMKAC 1 cut(s) 411
FokI GGATG 2 cut(s) 416, 689
FriOI GRGCYC 6 cut(s) 15, 192, 483, 537, 815, 827
FspAI RTGCGCAY 1 cut(s) 722
FspBI CTAG 1 cut(s) 576
FspI TGCGCA 1 cut(s) 722
GlaI GCGC 6 cut(s) 342, 451, 613, 716, 722, 858
GsaI CCCAGC 2 cut(s) 328, 824
GsuI CTGGAG 1 cut(s) 898
HaeII RGCGCY 2 cut(s) 615, 860
HapII CCGG 2 cut(s) 555, 902
HgaI GACGC 3 cut(s) 352, 901, 966
HhaI GCGC 6 cut(s) 343, 452, 614, 717, 723, 859
Hin1I GRCGYC 4 cut(s) 363, 612, 857, 893
Hin1II CATG 6 cut(s) 27, 292, 439, 721, 811, 820
Hin6I GCGC 6 cut(s) 341, 450, 612, 715, 721, 857
HinP1I GCGC 6 cut(s) 341, 450, 612, 715, 721, 857
HincII GTYRAC 1 cut(s) 412
HindII GTYRAC 1 cut(s) 412
HinfI GANTC 2 cut(s) 743, 913
HpaII CCGG 2 cut(s) 555, 902
HphI GGTGA 1 cut(s) 791
Hpy166II GTNNAC 1 cut(s) 412
Hpy188I TCNGA 5 cut(s) 241, 496, 661, 748, 1062
Hpy188III TCNNGA 3 cut(s) 58, 376, 877
Hpy8I GTNNAC 1 cut(s) 412
Hpy99I CGWCG 9 cut(s) 416, 500, 731, 734, 737, 773, 797, 895, 982
HpyAV CCTTC 3 cut(s) 126, 709, 1013
HpyCH4III ACNGT 2 cut(s) 398, 589
HpyCH4IV ACGT 1 cut(s) 475
HpyCH4V TGCA 2 cut(s) 284, 955
HpyF3I CTNAG 2 cut(s) 93, 124
HpySE526I ACGT 1 cut(s) 475
Hsp92I GRCGYC 4 cut(s) 363, 612, 857, 893
Hsp92II CATG 6 cut(s) 27, 292, 439, 721, 811, 820
HspAI GCGC 6 cut(s) 341, 450, 612, 715, 721, 857
KasI GGCGCC 2 cut(s) 611, 856
KspI CCGCGG 3 cut(s) 279, 421, 607
Kzo9I GATC 1 cut(s) 218
LguI GCTCTTC 1 cut(s) 72
LmnI GCTCC 7 cut(s) 55, 250, 272, 522, 779, 818, 879
LweI GCATC 1 cut(s) 438
MaeI CTAG 1 cut(s) 576
MaeII ACGT 1 cut(s) 475
MaeIII GTNAC 2 cut(s) 398, 797
MalI GATC 1 cut(s) 220
MbiI CCGCTC 2 cut(s) 455, 782
MboI GATC 1 cut(s) 218
MboII GAAGA 4 cut(s) 89, 170, 454, 1079
MhlI GDGCHC 8 cut(s) 15, 31, 192, 483, 537, 815, 827, 1047
MluCI AATT 4 cut(s) 235, 997, 1018, 1051
Mly113I GGCGCC 2 cut(s) 612, 857
MlyI GAGTC 1 cut(s) 922
MmeI TCCRAC 6 cut(s) 206, 519, 660, 684, 771, 1040
MslI CAYNNNNRTG 2 cut(s) 293, 434
MspA1I CMGCKG 3 cut(s) 278, 420, 606
MspI CCGG 2 cut(s) 555, 902
MspR9I CCNGG 1 cut(s) 1008
Mva1269I GAATGC 1 cut(s) 940
MvaI CCWGG 1 cut(s) 1008
MvnI CGCG 5 cut(s) 278, 420, 606, 890, 1078
NarI GGCGCC 2 cut(s) 612, 857
NdeII GATC 1 cut(s) 218
NheI GCTAGC 1 cut(s) 575
NlaIII CATG 6 cut(s) 27, 292, 439, 721, 811, 820
NmeAIII GCCGAG 3 cut(s) 462, 556, 657
NmuCI GTSAC 2 cut(s) 398, 797
NotI GCGGCCGC 1 cut(s) 421
NsbI TGCGCA 1 cut(s) 722
NspI RCATGY 2 cut(s) 439, 721
PaeI GCATGC 2 cut(s) 439, 721
PciSI GCTCTTC 1 cut(s) 72
PcsI WCGNNNNNNNCGW 1 cut(s) 765
PctI GAATGC 1 cut(s) 940
PfeI GAWTC 1 cut(s) 743
PflMI CCANNNNNTGG 1 cut(s) 513
PleI GAGTC 1 cut(s) 921
PluTI GGCGCC 2 cut(s) 615, 860
PmaCI CACGTG 1 cut(s) 476
PmlI CACGTG 1 cut(s) 476
PpsI GAGTC 1 cut(s) 921
Ppu21I YACGTR 1 cut(s) 476
Psp124BI GAGCTC 2 cut(s) 483, 815
Psp6I CCWGG 1 cut(s) 1006
PspCI CACGTG 1 cut(s) 476
PspEI GGTNACC 1 cut(s) 797
PspFI CCCAGC 2 cut(s) 324, 820
PspGI CCWGG 1 cut(s) 1006
PspOMI GGGCCC 2 cut(s) 11, 823
PspPI GGNCC 7 cut(s) 11, 12, 60, 394, 689, 823, 824
PstI CTGCAG 1 cut(s) 286
PstNI CAGNNNCTG 1 cut(s) 53
RseI CAYNNNNRTG 2 cut(s) 293, 434
SacI GAGCTC 2 cut(s) 483, 815
SacII CCGCGG 3 cut(s) 279, 421, 607
SalI GTCGAC 1 cut(s) 410
SapI GCTCTTC 1 cut(s) 72
Sau3AI GATC 1 cut(s) 218
Sau96I GGNCC 7 cut(s) 11, 12, 60, 394, 689, 823, 824
SchI GAGTC 1 cut(s) 922
ScrFI CCNGG 1 cut(s) 1008
SduI GDGCHC 8 cut(s) 15, 31, 192, 483, 537, 815, 827, 1047
SfaNI GCATC 1 cut(s) 438
SfcI CTRYAG 1 cut(s) 282
SfoI GGCGCC 2 cut(s) 613, 858
Sfr303I CCGCGG 3 cut(s) 279, 421, 607
SgrBI CCGCGG 3 cut(s) 279, 421, 607
SinI GGWCC 2 cut(s) 60, 394
SmiMI CAYNNNNRTG 2 cut(s) 293, 434
SphI GCATGC 2 cut(s) 439, 721
Sse9I AATT 4 cut(s) 235, 997, 1018, 1051
SspDI GGCGCC 2 cut(s) 611, 856
SspMI CTAG 1 cut(s) 576
SstI GAGCTC 2 cut(s) 483, 815
StyD4I CCNGG 1 cut(s) 1006
StyI CCWWGG 2 cut(s) 390, 841
TaaI ACNGT 2 cut(s) 398, 589
TaiI ACGT 1 cut(s) 478
TaqI TCGA 3 cut(s) 217, 411, 510
TaqII GACCGA 2 cut(s) 778, 785
TasI AATT 4 cut(s) 235, 997, 1018, 1051
TfiI GAWTC 1 cut(s) 743
TseFI GTSAC 2 cut(s) 398, 797
Tsp45I GTSAC 2 cut(s) 398, 797
TspDTI ATGAA 2 cut(s) 17, 691
TspGWI ACGGA 3 cut(s) 512, 583, 786
Van91I CCANNNNNTGG 1 cut(s) 513
VpaK11BI GGWCC 2 cut(s) 60, 394
XagI CCTNNNNNAGG 1 cut(s) 524
XceI RCATGY 2 cut(s) 439, 721
XcmI CCANNNNNNNNNTGG 1 cut(s) 54
XmiI GTMKAC 1 cut(s) 411
XspI CTAG 1 cut(s) 576
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.