pycom16g20410
TCP Family

Transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr16
OG0007792
Physical Location & Seq
Reverse (-)
18157105 .. 18157935
831 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom16g20410.1

Sequence Viewer

Length: 831 bp
ATGTCAAATTCCGAGGACCCTAATAACGAGCTCACTAACGGCGGCGGCGGCGGCGGAGGAGCTATGGTCGAGCAGACCTCGCAAAGGCCGTCAAGTAACGGCGTCTTAGCCGTCAAGAAGCCCCCTTCTAAGGACCGACACAGCAAGGTCGATGGACGAGGCCGCCGCATCCGCATGCCTATCATCTGCGCCGCACGTGTCTTCCAGCTCACACGGGAGCTCGGCCACAAGTCCGACGGCCAGACCATCGAGTGGCTCCTCCGCCAGGCCGAGCCCTCCATCATCGCCGCCACTGGCACCGGAACCACTCCCGCCTCCTTCTCTACTGTCTCCGTCTCCCTCCGCGGCGGCAACACGTCCTCCTCCGCCCCCTCCTCCGACCACAAGCCCCAACTCCTGAGCCCCACCCCCTTCATCCTCGGCAAGCGCGTCCGGGGTCCCCTCGACGACCACGACACCAACCACAACCACGACGCCTCCGCCACCAAGAACCCCTCCGACCACCACGCCAACAACGACGGAGCTGTGTCGGTGGTAGGGCACTCCATGGCCTCCATGCTGGGCCCCACCGCAGGGGGACCCGGCGGGTTCTGGGCCCCGCACTTCGGGCAGGTATGGAGCTTCGCCGCGACGCCGCCCCCGGAGCTGATGGACCAGTCAGCGGTGTCCCAGCAGCAGCAGCAGCAGCATTCGCTGTTCTTGCAGCAGCAGCCGATGGGCGAGGCGTCAGCGGCCAGAGTAGGAAATTACCTTCCAGGACATCTCAACTTGTTGGCTTCATTGTCTGGTGGGCACGGCAATTCGGGTCAGAGAGAAGACGACCGGCGCTGA

Protein Analysis

277

Amino Acids

29.08

Weight (kDa)

8.04

Isoelectric Point (pI)

47.76

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TCP PF03634 43 - 164 2.3e-30 TCP family transcription factor
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 601
AccB1I GGYRCC 1 cut(s) 296
AccB7I CCANNNNNTGG 1 cut(s) 252
AccII CGCG 3 cut(s) 345, 429, 629
AcoI YGGCCR 3 cut(s) 223, 238, 732
AcsI RAATTY 1 cut(s) 7
AcvI CACGTG 1 cut(s) 197
AcyI GRCGYC 4 cut(s) 102, 474, 632, 725
AfiI CCNNNNNNNGG 8 cut(s) 84, 130, 252, 265, 572, 573, 605, 661
AflIII ACRYGT 2 cut(s) 196, 354
AjiI CACGTC 1 cut(s) 357
AjnI CCWGG 2 cut(s) 264, 754
AluBI AGCT 7 cut(s) 31, 62, 208, 220, 524, 621, 646
AluI AGCT 7 cut(s) 31, 62, 208, 220, 524, 621, 646
Alw21I GWGCWC 2 cut(s) 33, 222
Alw26I GTCTC 2 cut(s) 334, 340
AoxI GGCC 9 cut(s) 86, 160, 223, 238, 267, 549, 562, 594, 732
ApaI GGGCCC 2 cut(s) 566, 598
ApeKI GCWGC 8 cut(s) 673, 676, 679, 682, 685, 703, 706, 709
ApoI RAATTY 1 cut(s) 7
AspLEI GCGC 3 cut(s) 191, 429, 828
AspS9I GGNCC 9 cut(s) 16, 133, 437, 562, 563, 578, 594, 595, 652
AsuC2I CCSGG 3 cut(s) 434, 582, 641
AvaII GGWCC 5 cut(s) 16, 133, 437, 578, 652
BaeGI GKGCMC 4 cut(s) 543, 566, 598, 795
BanI GGYRCC 1 cut(s) 296
BanII GRGCYC 6 cut(s) 33, 222, 276, 404, 566, 598
BbrPI CACGTG 1 cut(s) 197
BbsI GAAGAC 2 cut(s) 193, 822
Bbv12I GWGCWC 2 cut(s) 33, 222
BbvI GCAGC 8 cut(s) 685, 688, 691, 694, 697, 715, 718, 721
BccI CCATC 5 cut(s) 146, 254, 287, 643, 709
BceAI ACGGC 6 cut(s) 55, 73, 95, 115, 253, 811
BciT130I CCWGG 2 cut(s) 266, 756
BcnI CCSGG 3 cut(s) 434, 582, 641
BcoDI GTCTC 2 cut(s) 334, 340
BfoI RGCGCY 1 cut(s) 829
BfuAI ACCTGC 1 cut(s) 601
Bme1390I CCNGG 5 cut(s) 266, 434, 582, 641, 756
Bme18I GGWCC 5 cut(s) 16, 133, 437, 578, 652
BmgBI CACGTC 1 cut(s) 357
BmgT120I GGNCC 9 cut(s) 16, 133, 437, 562, 563, 578, 594, 595, 652
BmrFI CCNGG 5 cut(s) 266, 434, 582, 641, 756
BmsI GCATC 1 cut(s) 177
BpiI GAAGAC 2 cut(s) 193, 822
BplI GAGNNNNNCTC 2 cut(s) 62, 94
Bpu10I CCTNAGC 1 cut(s) 398
BpuMI CCSGG 3 cut(s) 434, 582, 641
BsaAI YACGTR 1 cut(s) 197
BsaHI GRCGYC 4 cut(s) 102, 474, 632, 725
BsaJI CCNNGG 6 cut(s) 12, 343, 418, 433, 546, 639
BsaWI WCCGGW 1 cut(s) 299
BsaXI ACNNNNNCTCC 6 cut(s) 51, 81, 344, 374, 461, 491
Bsc4I CCNNNNNNNGG 8 cut(s) 84, 130, 252, 265, 572, 573, 605, 661
Bse118I RCCGGY 1 cut(s) 822
Bse1I ACTGG 2 cut(s) 298, 655
BseBI CCWGG 2 cut(s) 266, 756
BseDI CCNNGG 6 cut(s) 12, 343, 418, 433, 546, 639
BseGI GGATG 2 cut(s) 168, 414
BseLI CCNNNNNNNGG 8 cut(s) 84, 130, 252, 265, 572, 573, 605, 661
BseMII CTCAG 1 cut(s) 389
BseNI ACTGG 2 cut(s) 298, 655
BseRI GAGGAG 4 cut(s) 72, 248, 352, 364
BseSI GKGCMC 4 cut(s) 543, 566, 598, 795
BseXI GCAGC 8 cut(s) 685, 688, 691, 694, 697, 715, 718, 721
BseYI CCCAGC 2 cut(s) 559, 669
Bsh1236I CGCG 3 cut(s) 345, 429, 629
Bsh1285I CGRYCG 1 cut(s) 823
BshFI GGCC 9 cut(s) 88, 162, 225, 240, 269, 551, 564, 596, 734
BshNI GGYRCC 1 cut(s) 296
BsiEI CGRYCG 1 cut(s) 823
BsiHKAI GWGCWC 2 cut(s) 33, 222
BsiSI CCGG 5 cut(s) 300, 433, 582, 641, 823
BslFI GGGAC 3 cut(s) 423, 591, 652
BslI CCNNNNNNNGG 8 cut(s) 84, 130, 252, 265, 572, 573, 605, 661
BsmAI GTCTC 2 cut(s) 334, 340
BsmBI CGTCTC 1 cut(s) 340
BsmFI GGGAC 3 cut(s) 423, 591, 652
BsmI GAATGC 1 cut(s) 688
BsnI GGCC 9 cut(s) 88, 162, 225, 240, 269, 551, 564, 596, 734
Bsp120I GGGCCC 2 cut(s) 562, 594
Bsp1286I GDGCHC 8 cut(s) 33, 222, 276, 404, 543, 566, 598, 795
Bsp19I CCATGG 1 cut(s) 546
BspANI GGCC 9 cut(s) 88, 162, 225, 240, 269, 551, 564, 596, 734
BspCNI CTCAG 1 cut(s) 390
BspFNI CGCG 3 cut(s) 345, 429, 629
BspMI ACCTGC 1 cut(s) 601
BspT107I GGYRCC 1 cut(s) 296
BsrFI RCCGGY 1 cut(s) 822
BsrI ACTGG 2 cut(s) 298, 655
BssAI RCCGGY 1 cut(s) 822
BssECI CCNNGG 6 cut(s) 12, 343, 418, 433, 546, 639
BssNI GRCGYC 4 cut(s) 102, 474, 632, 725
BssT1I CCWWGG 1 cut(s) 546
Bst2UI CCWGG 2 cut(s) 266, 756
Bst4CI ACNGT 1 cut(s) 328
BstACI GRCGYC 4 cut(s) 102, 474, 632, 725
BstBAI YACGTR 1 cut(s) 197
BstC8I GCNNGC 2 cut(s) 176, 425
BstDEI CTNAG 3 cut(s) 106, 129, 398
BstDSI CCRYGG 2 cut(s) 343, 546
BstENI CCTNNNNNAGG 2 cut(s) 82, 263
BstF5I GGATG 2 cut(s) 168, 414
BstFNI CGCG 3 cut(s) 345, 429, 629
BstH2I RGCGCY 1 cut(s) 829
BstHHI GCGC 3 cut(s) 191, 429, 828
BstMAI GTCTC 2 cut(s) 334, 340
BstMCI CGRYCG 1 cut(s) 823
BstNI CCWGG 2 cut(s) 266, 756
BstNSI RCATGY 1 cut(s) 178
BstSCI CCNGG 5 cut(s) 264, 432, 580, 639, 754
BstSLI GKGCMC 4 cut(s) 543, 566, 598, 795
BstUI CGCG 3 cut(s) 345, 429, 629
BstV1I GCAGC 8 cut(s) 685, 688, 691, 694, 697, 715, 718, 721
BstV2I GAAGAC 2 cut(s) 193, 822
BsuRI GGCC 9 cut(s) 88, 162, 225, 240, 269, 551, 564, 596, 734
BtgI CCRYGG 2 cut(s) 343, 546
BtgZI GCGATG 1 cut(s) 268
BtrI CACGTC 1 cut(s) 357
BtsCI GGATG 2 cut(s) 168, 414
BtsIMutI CAGTG 1 cut(s) 291
BveI ACCTGC 1 cut(s) 601
Cac8I GCNNGC 2 cut(s) 176, 425
CfoI GCGC 3 cut(s) 191, 429, 828
Cfr10I RCCGGY 1 cut(s) 822
Cfr13I GGNCC 9 cut(s) 16, 133, 437, 562, 563, 578, 594, 595, 652
Cfr42I CCGCGG 1 cut(s) 346
CseI GACGC 5 cut(s) 91, 418, 482, 640, 714
CviAII CATG 3 cut(s) 175, 547, 556
DdeI CTNAG 3 cut(s) 106, 129, 398
EaeI YGGCCR 3 cut(s) 223, 238, 732
EciI GGCGGA 4 cut(s) 69, 251, 355, 469
Ecl136II GAGCTC 2 cut(s) 31, 220
Eco130I CCWWGG 1 cut(s) 546
Eco24I GRGCYC 6 cut(s) 33, 222, 276, 404, 566, 598
Eco47I GGWCC 5 cut(s) 16, 133, 437, 578, 652
Eco53kI GAGCTC 2 cut(s) 31, 220
Eco72I CACGTG 1 cut(s) 197
EcoICRI GAGCTC 2 cut(s) 31, 220
EcoNI CCTNNNNNAGG 2 cut(s) 82, 263
EcoO109I RGGNCCY 5 cut(s) 16, 437, 563, 578, 595
EcoRII CCWGG 2 cut(s) 264, 754
EcoT14I CCWWGG 1 cut(s) 546
EcoT38I GRGCYC 6 cut(s) 33, 222, 276, 404, 566, 598
ErhI CCWWGG 1 cut(s) 546
Esp3I CGTCTC 1 cut(s) 340
FaeI CATG 3 cut(s) 178, 550, 559
FaiI YATR 5 cut(s) 65, 176, 548, 557, 616
FaqI GGGAC 3 cut(s) 423, 591, 652
FatI CATG 3 cut(s) 174, 546, 555
FauI CCCGC 3 cut(s) 319, 578, 606
FokI GGATG 2 cut(s) 155, 401
FriOI GRGCYC 6 cut(s) 33, 222, 276, 404, 566, 598
GlaI GCGC 3 cut(s) 190, 428, 827
GsaI CCCAGC 2 cut(s) 563, 673
HaeII RGCGCY 1 cut(s) 829
HaeIII GGCC 9 cut(s) 88, 162, 225, 240, 269, 551, 564, 596, 734
HapII CCGG 5 cut(s) 300, 433, 582, 641, 823
HgaI GACGC 5 cut(s) 91, 418, 482, 640, 714
HhaI GCGC 3 cut(s) 191, 429, 828
Hin1I GRCGYC 4 cut(s) 102, 474, 632, 725
Hin1II CATG 3 cut(s) 178, 550, 559
Hin6I GCGC 3 cut(s) 189, 427, 826
HinP1I GCGC 3 cut(s) 189, 427, 826
HpaII CCGG 5 cut(s) 300, 433, 582, 641, 823
Hpy188I TCNGA 5 cut(s) 13, 235, 379, 499, 810
Hpy188III TCNNGA 2 cut(s) 115, 397
Hpy99I CGWCG 5 cut(s) 239, 449, 476, 521, 634
HpyAV CCTTC 4 cut(s) 135, 328, 421, 761
HpyCH4III ACNGT 1 cut(s) 328
HpyCH4IV ACGT 2 cut(s) 196, 356
HpyCH4V TGCA 1 cut(s) 703
HpyF3I CTNAG 3 cut(s) 106, 129, 398
HpySE526I ACGT 2 cut(s) 196, 356
Hsp92I GRCGYC 4 cut(s) 102, 474, 632, 725
Hsp92II CATG 3 cut(s) 178, 550, 559
HspAI GCGC 3 cut(s) 189, 427, 826
KflI GGGWCCC 2 cut(s) 437, 578
KspI CCGCGG 1 cut(s) 346
LmnI GCTCC 6 cut(s) 59, 217, 261, 521, 618, 643
Lsp1109I GCAGC 8 cut(s) 685, 688, 691, 694, 697, 715, 718, 721
LweI GCATC 1 cut(s) 177
MaeII ACGT 2 cut(s) 196, 356
MaeIII GTNAC 1 cut(s) 95
MboII GAAGA 2 cut(s) 193, 827
MhlI GDGCHC 8 cut(s) 33, 222, 276, 404, 543, 566, 598, 795
MluCI AATT 3 cut(s) 7, 745, 799
MmeI TCCRAC 3 cut(s) 258, 402, 522
MslI CAYNNNNRTG 1 cut(s) 173
MspA1I CMGCKG 3 cut(s) 345, 662, 731
MspI CCGG 5 cut(s) 300, 433, 582, 641, 823
MspR9I CCNGG 5 cut(s) 266, 434, 582, 641, 756
Mva1269I GAATGC 1 cut(s) 688
MvaI CCWGG 2 cut(s) 266, 756
MvnI CGCG 3 cut(s) 345, 429, 629
NciI CCSGG 3 cut(s) 434, 582, 641
NcoI CCATGG 1 cut(s) 546
NlaIII CATG 3 cut(s) 178, 550, 559
NmeAIII GCCGAG 3 cut(s) 201, 295, 399
NspI RCATGY 1 cut(s) 178
PaeI GCATGC 1 cut(s) 178
PcsI WCGNNNNNNNCGW 4 cut(s) 86, 426, 450, 513
PctI GAATGC 1 cut(s) 688
PflMI CCANNNNNTGG 1 cut(s) 252
PfoI TCCNGGA 1 cut(s) 754
PmaCI CACGTG 1 cut(s) 197
PmlI CACGTG 1 cut(s) 197
Ppu21I YACGTR 1 cut(s) 197
PpuMI RGGWCCY 3 cut(s) 16, 437, 578
Psp124BI GAGCTC 2 cut(s) 33, 222
Psp5II RGGWCCY 3 cut(s) 16, 437, 578
Psp6I CCWGG 2 cut(s) 264, 754
PspCI CACGTG 1 cut(s) 197
PspFI CCCAGC 2 cut(s) 559, 669
PspGI CCWGG 2 cut(s) 264, 754
PspOMI GGGCCC 2 cut(s) 562, 594
PspPI GGNCC 9 cut(s) 16, 133, 437, 562, 563, 578, 594, 595, 652
PspPPI RGGWCCY 3 cut(s) 16, 437, 578
RseI CAYNNNNRTG 1 cut(s) 173
SacI GAGCTC 2 cut(s) 33, 222
SacII CCGCGG 1 cut(s) 346
Sau96I GGNCC 9 cut(s) 16, 133, 437, 562, 563, 578, 594, 595, 652
ScrFI CCNGG 5 cut(s) 266, 434, 582, 641, 756
SduI GDGCHC 8 cut(s) 33, 222, 276, 404, 543, 566, 598, 795
SfaNI GCATC 1 cut(s) 177
Sfr303I CCGCGG 1 cut(s) 346
SgrBI CCGCGG 1 cut(s) 346
SinI GGWCC 5 cut(s) 16, 133, 437, 578, 652
SmiMI CAYNNNNRTG 1 cut(s) 173
SphI GCATGC 1 cut(s) 178
Sse9I AATT 3 cut(s) 7, 745, 799
SstI GAGCTC 2 cut(s) 33, 222
StyD4I CCNGG 5 cut(s) 264, 432, 580, 639, 754
StyI CCWWGG 1 cut(s) 546
TaaI ACNGT 1 cut(s) 328
TaiI ACGT 2 cut(s) 199, 359
TaqI TCGA 4 cut(s) 69, 150, 249, 444
TaqII GACCGA 1 cut(s) 150
TasI AATT 3 cut(s) 7, 745, 799
TscAI CASTG 1 cut(s) 298
TseI GCWGC 8 cut(s) 673, 676, 679, 682, 685, 703, 706, 709
TspDTI ATGAA 2 cut(s) 403, 768
TspGWI ACGGA 2 cut(s) 322, 534
TspRI CASTG 1 cut(s) 298
Van91I CCANNNNNTGG 1 cut(s) 252
VpaK11BI GGWCC 5 cut(s) 16, 133, 437, 578, 652
XagI CCTNNNNNAGG 2 cut(s) 82, 263
XapI RAATTY 1 cut(s) 7
XceI RCATGY 1 cut(s) 178
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.