Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0007792

Physical Location & Seq

Genomic Coordinates Reverse (-)

4998154 .. 5002319

Gene Structure 4166 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G070500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 846 bp

ATGTCTAATTCCGAAGCGCCCAATAACGAGCTCACTAACGGCGGCGGAGGAGGAGGGATGGTGGAGCAGCAGGCGTCGCAGAGGCCGTCTAGTAACGGCGTCTTGTCCGTGAAGAAGCCGCCTTCGAAGGACCGCCACAGCAAGGTCGACGGGCGAGGCCGCCGCATCCGCATGCCCATCATATGCGCCGCACGTGTGTTCCAGCTCACACGTGAGCTCGGCCACAAGTCCGACGGCCAGACCATCGAGTGGCTCCTCCGCCAGGCCGAGCCCTCAATCATCGCTGCCACCGGAACTGGCACCACCCCCGCCTCCTTCTCCACCGTCTCCGTCTCCCTCCGCGGCGGCGCCCCCTCCTCCGCCCCCTCTTCCACCACCACCTCCGACCATAAGCCTCACCTCCTCGGCGGCCCCACCCCCTTCATACTAGGCAAGCGCGTCCGCGGGGCCCACGACGACGACAACGGCAACCACAACCACAGCCACGACGCCAAGGACCCCTCCGACCACGCCAACGACGGAGCCGTCTCCGTCGTCGGCCACTCCATGGCCTCCATGCTTGGCCCCACCGCGGGGGGTCCTGGCGGCTTCTGGGCCCCGCACTTCGGGCAGGTCTGGAGCTTCGCTGCCACCCCGCCGCCGGAGATGATGGCCCAGTCGGCAGTTTCCCACCAGCAACACCAGCAGCATCAGCAGCAACAGCATTCGTTGTTCTTACAGCAACAGCCGATGGGCGAGGCCTCCGCGGCCAGAGTGGGAAATTACCTTCCAGGACATCTCAATTTGTTGGCTTCTTTGTCGGGCGGGCACGGGAATTCTGGTCGGAGAGAAGACAACCCGCGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0042752 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043433 GO:0044092 GO:0044424 GO:0044464 GO:0048519 GO:0050789 GO:0050794 GO:0051090 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0065009 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04712 map04712

Pfam Domains

Protein Families

TCP

Protein Analysis

282

Amino Acids

29.57

Weight (kDa)

9.25

Isoelectric Point (pI)

46.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007792)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G35560 AT1G72010 AT3G45150 AT3G47620 AT5G08330 AT5G23280 AT5G41030
fragaria_vesca	FvH4_4g06720
malus_domestica	MD13G1238400.v1.1 MD16G1243300.v1.1
prunus_persica	Prupe.1G070500_v2.0.a1 Prupe.1G070500_v2.0.a1 Prupe.1G070500_v2.0.a1
pyrus_communis	pycom13g21080 pycom16g20410
rosa_chinensis	RchiOBHm_Chr4g0398661
rosa_laevigata	RLG00000009336
rosa_multiflora	Rmu_co8332803.1_g000001
rosa_rugosa	Rorug04G0010200
rosa_samantha	Rh4AG088200 Rh4BG084800 Rh4CG096400 Rh4DG079600
rosa_wichuraiana	Rw4G007310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	524
Acc36I	ACCTGC	1 cut(s)	601
AccB1I	GGYRCC	2 cut(s)	299, 347
AccB7I	CCANNNNNTGG	2 cut(s)	249, 547
AccI	GTMKAC	1 cut(s)	147
AccII	CGCG	6 cut(s)	342, 438, 444, 572, 746, 841
AcoI	YGGCCR	4 cut(s)	220, 235, 538, 747
AcsI	RAATTY	1 cut(s)	814
AcvI	CACGTG	2 cut(s)	194, 212
AcyI	GRCGYC	4 cut(s)	74, 99, 348, 489
AfiI	CCNNNNNNNGG	9 cut(s)	142, 249, 262, 547, 571, 572, 573, 605, 640
AflIII	ACRYGT	2 cut(s)	193, 209
AjnI	CCWGG	3 cut(s)	261, 580, 769
AluBI	AGCT	4 cut(s)	31, 205, 217, 621
AluI	AGCT	4 cut(s)	31, 205, 217, 621
Alw21I	GWGCWC	2 cut(s)	33, 219
Alw26I	GTCTC	3 cut(s)	331, 337, 532
ApaI	GGGCCC	2 cut(s)	451, 598
ApeKI	GCWGC	5 cut(s)	67, 284, 626, 685, 694
ApoI	RAATTY	1 cut(s)	814
AspLEI	GCGC	4 cut(s)	19, 188, 350, 438
AsuHPI	GGTGA	1 cut(s)	389
AsuII	TTCGAA	1 cut(s)	125
AvaII	GGWCC	3 cut(s)	130, 496, 578
BaeGI	GKGCMC	3 cut(s)	451, 598, 810
BanI	GGYRCC	2 cut(s)	299, 347
BanII	GRGCYC	5 cut(s)	33, 219, 273, 451, 598
BbrPI	CACGTG	2 cut(s)	194, 212
BbsI	GAAGAC	1 cut(s)	837
Bbv12I	GWGCWC	2 cut(s)	33, 219
BbvI	GCAGC	5 cut(s)	79, 271, 613, 697, 706
BccI	CCATC	5 cut(s)	52, 185, 251, 643, 724
BceAI	ACGGC	6 cut(s)	55, 70, 112, 250, 481, 509
BciT130I	CCWGG	3 cut(s)	263, 582, 771
BcoDI	GTCTC	3 cut(s)	331, 337, 532
BfaI	CTAG	2 cut(s)	90, 428
BfoI	RGCGCY	2 cut(s)	20, 351
BfuAI	ACCTGC	1 cut(s)	601
BglI	GCCNNNNNGGC	2 cut(s)	659, 746
Bme1390I	CCNGG	3 cut(s)	263, 582, 771
Bme18I	GGWCC	3 cut(s)	130, 496, 578
BmrFI	CCNGG	3 cut(s)	263, 582, 771
BmrI	ACTGGG	1 cut(s)	649
BmsI	GCATC	2 cut(s)	174, 697
BmuI	ACTGGG	1 cut(s)	649
BpiI	GAAGAC	1 cut(s)	837
BpmI	CTGGAG	1 cut(s)	637
Bpu14I	TTCGAA	1 cut(s)	125
BsaAI	YACGTR	2 cut(s)	194, 212
BsaHI	GRCGYC	4 cut(s)	74, 99, 348, 489
BsaJI	CCNNGG	7 cut(s)	340, 403, 442, 492, 546, 570, 744
BsaWI	WCCGGW	1 cut(s)	290
BsaXI	ACNNNNNCTCC	2 cut(s)	45, 75
Bsc4I	CCNNNNNNNGG	9 cut(s)	142, 249, 262, 547, 571, 572, 573, 605, 640
Bse1I	ACTGG	2 cut(s)	301, 655
BseBI	CCWGG	3 cut(s)	263, 582, 771
BseDI	CCNNGG	7 cut(s)	340, 403, 442, 492, 546, 570, 744
BseGI	GGATG	2 cut(s)	63, 165
BseLI	CCNNNNNNNGG	9 cut(s)	142, 249, 262, 547, 571, 572, 573, 605, 640
BseNI	ACTGG	2 cut(s)	301, 655
BseRI	GAGGAG	5 cut(s)	63, 66, 245, 346, 392
BseSI	GKGCMC	3 cut(s)	451, 598, 810
BseXI	GCAGC	5 cut(s)	79, 271, 613, 697, 706
Bsh1236I	CGCG	6 cut(s)	342, 438, 444, 572, 746, 841
BshNI	GGYRCC	2 cut(s)	299, 347
BsiHKAI	GWGCWC	2 cut(s)	33, 219
BsiSI	CCGG	2 cut(s)	291, 641
BslI	CCNNNNNNNGG	9 cut(s)	142, 249, 262, 547, 571, 572, 573, 605, 640
BsmAI	GTCTC	3 cut(s)	331, 337, 532
BsmBI	CGTCTC	3 cut(s)	331, 337, 532
BsmI	GAATGC	1 cut(s)	703
Bsp119I	TTCGAA	1 cut(s)	125
Bsp120I	GGGCCC	2 cut(s)	447, 594
Bsp1286I	GDGCHC	6 cut(s)	33, 219, 273, 451, 598, 810
Bsp19I	CCATGG	1 cut(s)	546
BspFNI	CGCG	6 cut(s)	342, 438, 444, 572, 746, 841
BspMI	ACCTGC	1 cut(s)	601
BspT104I	TTCGAA	1 cut(s)	125
BspT107I	GGYRCC	2 cut(s)	299, 347
BsrI	ACTGG	2 cut(s)	301, 655
BssECI	CCNNGG	7 cut(s)	340, 403, 442, 492, 546, 570, 744
BssNI	GRCGYC	4 cut(s)	74, 99, 348, 489
BssT1I	CCWWGG	2 cut(s)	492, 546
Bst2UI	CCWGG	3 cut(s)	263, 582, 771
Bst4CI	ACNGT	1 cut(s)	325
Bst6I	CTCTTC	1 cut(s)	373
BstACI	GRCGYC	4 cut(s)	74, 99, 348, 489
BstBAI	YACGTR	2 cut(s)	194, 212
BstBI	TTCGAA	1 cut(s)	125
BstC8I	GCNNGC	4 cut(s)	72, 173, 434, 806
BstDSI	CCRYGG	5 cut(s)	340, 442, 546, 570, 744
BstENI	CCTNNNNNAGG	1 cut(s)	260
BstF5I	GGATG	2 cut(s)	63, 165
BstFNI	CGCG	6 cut(s)	342, 438, 444, 572, 746, 841
BstH2I	RGCGCY	2 cut(s)	20, 351
BstHHI	GCGC	4 cut(s)	19, 188, 350, 438
BstMAI	GTCTC	3 cut(s)	331, 337, 532
BstMWI	GCNNNNNNNGC	9 cut(s)	76, 168, 607, 659, 682, 691, 694, 700, 746
BstNI	CCWGG	3 cut(s)	263, 582, 771
BstNSI	RCATGY	1 cut(s)	175
BstSCI	CCNGG	3 cut(s)	261, 580, 769
BstSLI	GKGCMC	3 cut(s)	451, 598, 810
BstUI	CGCG	6 cut(s)	342, 438, 444, 572, 746, 841
BstV1I	GCAGC	5 cut(s)	79, 271, 613, 697, 706
BstV2I	GAAGAC	1 cut(s)	837
BtgI	CCRYGG	5 cut(s)	340, 442, 546, 570, 744
BtgZI	GCGATG	1 cut(s)	265
BtsCI	GGATG	2 cut(s)	63, 165
BveI	ACCTGC	1 cut(s)	601
Cac8I	GCNNGC	4 cut(s)	72, 173, 434, 806
CfoI	GCGC	4 cut(s)	19, 188, 350, 438
Cfr42I	CCGCGG	4 cut(s)	343, 445, 573, 747
CseI	GACGC	4 cut(s)	63, 88, 427, 497
CviAII	CATG	3 cut(s)	172, 547, 556
DinI	GGCGCC	1 cut(s)	349
DrdI	GACNNNNNNGTC	1 cut(s)	524
DseDI	GACNNNNNNGTC	1 cut(s)	524
EaeI	YGGCCR	4 cut(s)	220, 235, 538, 747
Eam1104I	CTCTTC	1 cut(s)	373
EarI	CTCTTC	1 cut(s)	373
EciI	GGCGGA	3 cut(s)	60, 248, 349
Ecl136II	GAGCTC	2 cut(s)	31, 217
Eco130I	CCWWGG	2 cut(s)	492, 546
Eco147I	AGGCCT	1 cut(s)	740
Eco24I	GRGCYC	5 cut(s)	33, 219, 273, 451, 598
Eco47I	GGWCC	3 cut(s)	130, 496, 578
Eco53kI	GAGCTC	2 cut(s)	31, 217
Eco72I	CACGTG	2 cut(s)	194, 212
EcoICRI	GAGCTC	2 cut(s)	31, 217
EcoNI	CCTNNNNNAGG	1 cut(s)	260
EcoO109I	RGGNCCY	4 cut(s)	447, 496, 578, 595
EcoRI	GAATTC	1 cut(s)	814
EcoRII	CCWGG	3 cut(s)	261, 580, 769
EcoT14I	CCWWGG	2 cut(s)	492, 546
EcoT38I	GRGCYC	5 cut(s)	33, 219, 273, 451, 598
EgeI	GGCGCC	1 cut(s)	349
EheI	GGCGCC	1 cut(s)	349
ErhI	CCWWGG	2 cut(s)	492, 546
Esp3I	CGTCTC	3 cut(s)	331, 337, 532
FaeI	CATG	3 cut(s)	175, 550, 559
FaiI	YATR	7 cut(s)	173, 182, 184, 390, 425, 548, 557
FatI	CATG	3 cut(s)	171, 546, 555
FauI	CCCGC	6 cut(s)	316, 437, 565, 606, 642, 797
FauNDI	CATATG	1 cut(s)	182
FblI	GTMKAC	1 cut(s)	147
FokI	GGATG	2 cut(s)	70, 152
FriOI	GRGCYC	5 cut(s)	33, 219, 273, 451, 598
FspBI	CTAG	2 cut(s)	90, 428
GlaI	GCGC	4 cut(s)	18, 187, 349, 437
GsuI	CTGGAG	1 cut(s)	637
HaeII	RGCGCY	2 cut(s)	20, 351
HapII	CCGG	2 cut(s)	291, 641
HgaI	GACGC	4 cut(s)	63, 88, 427, 497
HhaI	GCGC	4 cut(s)	19, 188, 350, 438
Hin1I	GRCGYC	4 cut(s)	74, 99, 348, 489
Hin1II	CATG	3 cut(s)	175, 550, 559
Hin6I	GCGC	4 cut(s)	17, 186, 348, 436
HinP1I	GCGC	4 cut(s)	17, 186, 348, 436
HincII	GTYRAC	1 cut(s)	148
HindII	GTYRAC	1 cut(s)	148
HpaII	CCGG	2 cut(s)	291, 641
HphI	GGTGA	1 cut(s)	389
Hpy166II	GTNNAC	1 cut(s)	148
Hpy188I	TCNGA	5 cut(s)	13, 232, 385, 505, 825
Hpy188III	TCNNGA	1 cut(s)	616
Hpy8I	GTNNAC	1 cut(s)	148
Hpy99I	CGWCG	9 cut(s)	79, 152, 236, 458, 461, 491, 521, 536, 539
HpyAV	CCTTC	5 cut(s)	121, 132, 325, 430, 776
HpyCH4III	ACNGT	1 cut(s)	325
HpyCH4IV	ACGT	2 cut(s)	193, 211
HpyF10VI	GCNNNNNNNGC	9 cut(s)	76, 168, 607, 659, 682, 691, 694, 700, 746
HpySE526I	ACGT	2 cut(s)	193, 211
Hsp92I	GRCGYC	4 cut(s)	74, 99, 348, 489
Hsp92II	CATG	3 cut(s)	175, 550, 559
HspAI	GCGC	4 cut(s)	17, 186, 348, 436
KasI	GGCGCC	1 cut(s)	347
KspI	CCGCGG	4 cut(s)	343, 445, 573, 747
LmnI	GCTCC	4 cut(s)	64, 258, 521, 618
Lsp1109I	GCAGC	5 cut(s)	79, 271, 613, 697, 706
LweI	GCATC	2 cut(s)	174, 697
MaeI	CTAG	2 cut(s)	90, 428
MaeII	ACGT	2 cut(s)	193, 211
MaeIII	GTNAC	1 cut(s)	92
MboII	GAAGA	3 cut(s)	124, 360, 842
MhlI	GDGCHC	6 cut(s)	33, 219, 273, 451, 598, 810
MluCI	AATT	4 cut(s)	7, 760, 781, 814
Mly113I	GGCGCC	1 cut(s)	348
MmeI	TCCRAC	4 cut(s)	255, 408, 528, 803
MslI	CAYNNNNRTG	1 cut(s)	170
MspA1I	CMGCKG	4 cut(s)	342, 444, 572, 746
MspI	CCGG	2 cut(s)	291, 641
MspR9I	CCNGG	3 cut(s)	263, 582, 771
Mva1269I	GAATGC	1 cut(s)	703
MvaI	CCWGG	3 cut(s)	263, 582, 771
MvnI	CGCG	6 cut(s)	342, 438, 444, 572, 746, 841
MwoI	GCNNNNNNNGC	9 cut(s)	76, 168, 607, 659, 682, 691, 694, 700, 746
NarI	GGCGCC	1 cut(s)	348
NcoI	CCATGG	1 cut(s)	546
NdeI	CATATG	1 cut(s)	182
NlaIII	CATG	3 cut(s)	175, 550, 559
NmeAIII	GCCGAG	3 cut(s)	198, 292, 384
NspI	RCATGY	1 cut(s)	175
NspV	TTCGAA	1 cut(s)	125
PaeI	GCATGC	1 cut(s)	175
PceI	AGGCCT	1 cut(s)	740
PcsI	WCGNNNNNNNCGW	2 cut(s)	83, 522
PctI	GAATGC	1 cut(s)	703
PflMI	CCANNNNNTGG	2 cut(s)	249, 547
PfoI	TCCNGGA	1 cut(s)	769
PluTI	GGCGCC	1 cut(s)	351
PmaCI	CACGTG	2 cut(s)	194, 212
PmlI	CACGTG	2 cut(s)	194, 212
Ppu21I	YACGTR	2 cut(s)	194, 212
PpuMI	RGGWCCY	2 cut(s)	496, 578
Psp124BI	GAGCTC	2 cut(s)	33, 219
Psp5II	RGGWCCY	2 cut(s)	496, 578
Psp6I	CCWGG	3 cut(s)	261, 580, 769
PspCI	CACGTG	2 cut(s)	194, 212
PspGI	CCWGG	3 cut(s)	261, 580, 769
PspOMI	GGGCCC	2 cut(s)	447, 594
PspPPI	RGGWCCY	2 cut(s)	496, 578
RseI	CAYNNNNRTG	1 cut(s)	170
SacI	GAGCTC	2 cut(s)	33, 219
SacII	CCGCGG	4 cut(s)	343, 445, 573, 747
SalI	GTCGAC	1 cut(s)	146
ScrFI	CCNGG	3 cut(s)	263, 582, 771
SduI	GDGCHC	6 cut(s)	33, 219, 273, 451, 598, 810
SfaNI	GCATC	2 cut(s)	174, 697
SfiI	GGCCNNNNNGGCC	1 cut(s)	746
SfoI	GGCGCC	1 cut(s)	349
Sfr303I	CCGCGG	4 cut(s)	343, 445, 573, 747
SfuI	TTCGAA	1 cut(s)	125
SgrBI	CCGCGG	4 cut(s)	343, 445, 573, 747
SinI	GGWCC	3 cut(s)	130, 496, 578
SmiMI	CAYNNNNRTG	1 cut(s)	170
SphI	GCATGC	1 cut(s)	175
Sse9I	AATT	4 cut(s)	7, 760, 781, 814
SseBI	AGGCCT	1 cut(s)	740
SspDI	GGCGCC	1 cut(s)	347
SspMI	CTAG	2 cut(s)	90, 428
SstI	GAGCTC	2 cut(s)	33, 219
StuI	AGGCCT	1 cut(s)	740
StyD4I	CCNGG	3 cut(s)	261, 580, 769
StyI	CCWWGG	2 cut(s)	492, 546
TaaI	ACNGT	1 cut(s)	325
TaiI	ACGT	2 cut(s)	196, 214
TaqI	TCGA	3 cut(s)	125, 147, 246
TasI	AATT	4 cut(s)	7, 760, 781, 814
TseI	GCWGC	5 cut(s)	67, 284, 626, 685, 694
TspDTI	ATGAA	1 cut(s)	412
TspGWI	ACGGA	4 cut(s)	97, 319, 520, 534
Van91I	CCANNNNNTGG	2 cut(s)	249, 547
VpaK11BI	GGWCC	3 cut(s)	130, 496, 578
XagI	CCTNNNNNAGG	1 cut(s)	260
XapI	RAATTY	1 cut(s)	814
XceI	RCATGY	1 cut(s)	175
XmiI	GTMKAC	1 cut(s)	147
XspI	CTAG	2 cut(s)	90, 428

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.