Rw4G007310
TCP Family

Transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr4
OG0007792
Physical Location & Seq
Reverse (-)
15288592 .. 15290465
1874 bp
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UTR
Exon/CDS
Intron
Rw4G007310.1

Sequence Viewer

Length: 846 bp
ATGTCTAATTCCGAGGCCCCGAATAACGAGCTCTCCAATGGAGCAGCAGCTATGCTGATGGAAAGACAGCAGCAGCAGCAGCAGCAACAACAGCAACAGACCCAGCAACAGACGGCGGCATCTAACGGCGTCTTGGCCGTCAAGAAGCCGCCGTCAAAGGACCGACACAGCAAGGTCGACGGCCGGGGCCGACGCATCCGCATGCCCATCATCTGCGCCGCACGTGTCTTCCAGCTCACACGTGAGCTCGGCCACAAGTCCGACGGCCAGACCATCGAGTGGCTCCTCCGCCAGGCCGAGCCCTCCATCATCGCCGCCACCGGCACCGGCACCACTCCCGCCAGCTTCTCCACCGTCTCCGTCTCCCTCCGAGGCGGAGCCTCCTCCGGCGCCGCCTCCCTCTCCAACTCCTCCACTACTTCCTCCAACGACCACAAGCCCCTCCTCGGCGGCCCCACCCCCTTCATCCTCGGCAAGCGCATGCGCGCCGACGACGACGCCAAGGACGCCGACGCGCACCACGGCGCCACCGACGGAGCAGGACCAGGAGCAGTCTCGGTCGTCGGTCACCACTCCATGAGCTCCATGCTGGGCTCCGCCGCCCAGGGAGGGTTCTGGGCGCCGCACTACGGACAAGTCTGGAGCTTCGCCACCACGCCGCCGCCGGAAATGATGAGTCAGCAGCAGTCGGTCTCCCAACAGCATTCTTTGTTCTTGCCGCAGCAGCCGATGGGGGAAGCCTCGGCGGCAAGAGTGGGAAATTACCTTCCGGGACATCTCAATTTGTTGGCTTCTTTGTCGGGCGGGCACGGCAATTCGGGTCGGAGAGAAGACGACCCGCGTTAA

Protein Analysis

281

Amino Acids

29.63

Weight (kDa)

9.2

Isoelectric Point (pI)

48.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TCP PF03634 52 - 136 3.3e-29 TCP family transcription factor
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 5 cut(s) 323, 329, 389, 524, 619
AccB7I CCANNNNNTGG 1 cut(s) 279
AccI GTMKAC 1 cut(s) 177
AccII CGCG 3 cut(s) 486, 515, 841
AcoI YGGCCR 4 cut(s) 135, 181, 250, 265
AcvI CACGTG 2 cut(s) 224, 242
AcyI GRCGYC 6 cut(s) 129, 390, 498, 507, 525, 620
AfiI CCNNNNNNNGG 5 cut(s) 279, 292, 446, 609, 629
AflIII ACRYGT 2 cut(s) 223, 239
AjnI CCWGG 3 cut(s) 291, 544, 603
AluBI AGCT 7 cut(s) 31, 50, 235, 247, 345, 582, 645
AluI AGCT 7 cut(s) 31, 50, 235, 247, 345, 582, 645
Alw21I GWGCWC 3 cut(s) 33, 249, 584
Alw26I GTCTC 4 cut(s) 361, 367, 559, 697
AoxI GGCC 8 cut(s) 15, 135, 181, 187, 250, 265, 294, 451
AspLEI GCGC 8 cut(s) 218, 392, 480, 486, 488, 517, 527, 622
AspS9I GGNCC 5 cut(s) 16, 160, 187, 452, 542
AsuC2I CCSGG 2 cut(s) 185, 771
AsuHPI GGTGA 1 cut(s) 560
AvaII GGWCC 2 cut(s) 160, 542
BaeGI GKGCMC 1 cut(s) 810
BanI GGYRCC 5 cut(s) 323, 329, 389, 524, 619
BanII GRGCYC 5 cut(s) 33, 249, 303, 584, 596
BbrPI CACGTG 2 cut(s) 224, 242
BbsI GAAGAC 2 cut(s) 220, 837
Bbv12I GWGCWC 3 cut(s) 33, 249, 584
BccI CCATC 5 cut(s) 52, 215, 281, 314, 724
BceAI ACGGC 8 cut(s) 122, 129, 136, 142, 196, 280, 538, 826
BciT130I CCWGG 3 cut(s) 293, 546, 605
BcnI CCSGG 2 cut(s) 185, 771
BcoDI GTCTC 4 cut(s) 361, 367, 559, 697
BfoI RGCGCY 3 cut(s) 393, 528, 623
BglI GCCNNNNNGGC 1 cut(s) 746
Bme1390I CCNGG 5 cut(s) 185, 293, 546, 605, 771
Bme18I GGWCC 2 cut(s) 160, 542
BmgT120I GGNCC 5 cut(s) 16, 160, 187, 452, 542
BmrFI CCNGG 5 cut(s) 185, 293, 546, 605, 771
BmsI GCATC 2 cut(s) 128, 204
BpiI GAAGAC 2 cut(s) 220, 837
BpmI CTGGAG 1 cut(s) 661
BpuMI CCSGG 2 cut(s) 185, 771
BsaAI YACGTR 2 cut(s) 224, 242
BsaHI GRCGYC 6 cut(s) 129, 390, 498, 507, 525, 620
BsaI GGTCTC 1 cut(s) 697
BsaXI ACNNNNNCTCC 2 cut(s) 17, 47
Bsc4I CCNNNNNNNGG 5 cut(s) 279, 292, 446, 609, 629
Bse118I RCCGGY 2 cut(s) 320, 326
BseBI CCWGG 3 cut(s) 293, 546, 605
BseGI GGATG 2 cut(s) 195, 465
BseLI CCNNNNNNNGG 5 cut(s) 279, 292, 446, 609, 629
BsePI GCGCGC 1 cut(s) 484
BseRI GAGGAG 4 cut(s) 275, 373, 400, 434
BseSI GKGCMC 1 cut(s) 810
BseX3I CGGCCG 1 cut(s) 181
BseYI CCCAGC 2 cut(s) 102, 589
Bsh1236I CGCG 3 cut(s) 486, 515, 841
Bsh1285I CGRYCG 2 cut(s) 184, 561
BshFI GGCC 8 cut(s) 17, 137, 183, 189, 252, 267, 296, 453
BshNI GGYRCC 5 cut(s) 323, 329, 389, 524, 619
BsiEI CGRYCG 2 cut(s) 184, 561
BsiHKAI GWGCWC 3 cut(s) 33, 249, 584
BsiSI CCGG 6 cut(s) 184, 321, 327, 387, 665, 770
BslFI GGGAC 1 cut(s) 786
BslI CCNNNNNNNGG 5 cut(s) 279, 292, 446, 609, 629
BsmAI GTCTC 4 cut(s) 361, 367, 559, 697
BsmBI CGTCTC 2 cut(s) 361, 367
BsmFI GGGAC 1 cut(s) 786
BsmI GAATGC 1 cut(s) 703
BsnI GGCC 8 cut(s) 17, 137, 183, 189, 252, 267, 296, 453
Bso31I GGTCTC 1 cut(s) 697
Bsp1286I GDGCHC 6 cut(s) 33, 249, 303, 584, 596, 810
BspANI GGCC 8 cut(s) 17, 137, 183, 189, 252, 267, 296, 453
BspFNI CGCG 3 cut(s) 486, 515, 841
BspT107I GGYRCC 5 cut(s) 323, 329, 389, 524, 619
BspTNI GGTCTC 1 cut(s) 697
BsrFI RCCGGY 2 cut(s) 320, 326
BssAI RCCGGY 2 cut(s) 320, 326
BssHII GCGCGC 1 cut(s) 484
BssNI GRCGYC 6 cut(s) 129, 390, 498, 507, 525, 620
BssT1I CCWWGG 1 cut(s) 501
Bst2UI CCWGG 3 cut(s) 293, 546, 605
Bst4CI ACNGT 1 cut(s) 355
BstACI GRCGYC 6 cut(s) 129, 390, 498, 507, 525, 620
BstBAI YACGTR 2 cut(s) 224, 242
BstC8I GCNNGC 6 cut(s) 203, 343, 476, 482, 486, 806
BstDSI CCRYGG 1 cut(s) 520
BstEII GGTNACC 1 cut(s) 566
BstENI CCTNNNNNAGG 1 cut(s) 290
BstF5I GGATG 2 cut(s) 195, 465
BstFNI CGCG 3 cut(s) 486, 515, 841
BstH2I RGCGCY 3 cut(s) 393, 528, 623
BstHHI GCGC 8 cut(s) 218, 392, 480, 486, 488, 517, 527, 622
BstMAI GTCTC 4 cut(s) 361, 367, 559, 697
BstMCI CGRYCG 2 cut(s) 184, 561
BstMWI GCNNNNNNNGC 8 cut(s) 76, 79, 82, 91, 506, 724, 746, 810
BstNI CCWGG 3 cut(s) 293, 546, 605
BstNSI RCATGY 2 cut(s) 205, 484
BstPI GGTNACC 1 cut(s) 566
BstSCI CCNGG 5 cut(s) 183, 291, 544, 603, 769
BstSLI GKGCMC 1 cut(s) 810
BstUI CGCG 3 cut(s) 486, 515, 841
BstV2I GAAGAC 2 cut(s) 220, 837
BstZI CGGCCG 1 cut(s) 181
BsuRI GGCC 8 cut(s) 17, 137, 183, 189, 252, 267, 296, 453
BtgI CCRYGG 1 cut(s) 520
BtgZI GCGATG 1 cut(s) 295
BtsCI GGATG 2 cut(s) 195, 465
Cac8I GCNNGC 6 cut(s) 203, 343, 476, 482, 486, 806
CfoI GCGC 8 cut(s) 218, 392, 480, 486, 488, 517, 527, 622
Cfr10I RCCGGY 2 cut(s) 320, 326
Cfr13I GGNCC 5 cut(s) 16, 160, 187, 452, 542
CseI GACGC 5 cut(s) 118, 201, 506, 515, 521
CviAII CATG 4 cut(s) 202, 481, 577, 586
DinI GGCGCC 3 cut(s) 391, 526, 621
EaeI YGGCCR 4 cut(s) 135, 181, 250, 265
EagI CGGCCG 1 cut(s) 181
EciI GGCGGA 3 cut(s) 278, 390, 586
Ecl136II GAGCTC 3 cut(s) 31, 247, 582
EclXI CGGCCG 1 cut(s) 181
Eco130I CCWWGG 1 cut(s) 501
Eco24I GRGCYC 5 cut(s) 33, 249, 303, 584, 596
Eco31I GGTCTC 1 cut(s) 697
Eco47I GGWCC 2 cut(s) 160, 542
Eco52I CGGCCG 1 cut(s) 181
Eco53kI GAGCTC 3 cut(s) 31, 247, 582
Eco72I CACGTG 2 cut(s) 224, 242
Eco91I GGTNACC 1 cut(s) 566
EcoICRI GAGCTC 3 cut(s) 31, 247, 582
EcoNI CCTNNNNNAGG 1 cut(s) 290
EcoO109I RGGNCCY 1 cut(s) 16
EcoO65I GGTNACC 1 cut(s) 566
EcoRII CCWGG 3 cut(s) 291, 544, 603
EcoT14I CCWWGG 1 cut(s) 501
EcoT38I GRGCYC 5 cut(s) 33, 249, 303, 584, 596
EgeI GGCGCC 3 cut(s) 391, 526, 621
EheI GGCGCC 3 cut(s) 391, 526, 621
ErhI CCWWGG 1 cut(s) 501
Esp3I CGTCTC 2 cut(s) 361, 367
FaeI CATG 4 cut(s) 205, 484, 580, 589
FaiI YATR 5 cut(s) 53, 203, 482, 578, 587
FaqI GGGAC 1 cut(s) 786
FatI CATG 4 cut(s) 201, 480, 576, 585
FauI CCCGC 2 cut(s) 346, 797
FblI GTMKAC 1 cut(s) 177
FokI GGATG 2 cut(s) 182, 452
FriOI GRGCYC 5 cut(s) 33, 249, 303, 584, 596
GlaI GCGC 8 cut(s) 217, 391, 479, 485, 487, 516, 526, 621
GsaI CCCAGC 2 cut(s) 106, 593
GsuI CTGGAG 1 cut(s) 661
HaeII RGCGCY 3 cut(s) 393, 528, 623
HaeIII GGCC 8 cut(s) 17, 137, 183, 189, 252, 267, 296, 453
HapII CCGG 6 cut(s) 184, 321, 327, 387, 665, 770
HgaI GACGC 5 cut(s) 118, 201, 506, 515, 521
HhaI GCGC 8 cut(s) 218, 392, 480, 486, 488, 517, 527, 622
Hin1I GRCGYC 6 cut(s) 129, 390, 498, 507, 525, 620
Hin1II CATG 4 cut(s) 205, 484, 580, 589
Hin6I GCGC 8 cut(s) 216, 390, 478, 484, 486, 515, 525, 620
HinP1I GCGC 8 cut(s) 216, 390, 478, 484, 486, 515, 525, 620
HincII GTYRAC 1 cut(s) 178
HindII GTYRAC 1 cut(s) 178
HinfI GANTC 1 cut(s) 676
HpaII CCGG 6 cut(s) 184, 321, 327, 387, 665, 770
HphI GGTGA 1 cut(s) 560
Hpy166II GTNNAC 1 cut(s) 178
Hpy188I TCNGA 4 cut(s) 13, 262, 371, 825
Hpy188III TCNNGA 2 cut(s) 142, 640
Hpy8I GTNNAC 1 cut(s) 178
Hpy99I CGWCG 9 cut(s) 182, 195, 266, 494, 497, 500, 515, 536, 566
HpyAV CCTTC 2 cut(s) 472, 776
HpyCH4III ACNGT 1 cut(s) 355
HpyCH4IV ACGT 2 cut(s) 223, 241
HpyF10VI GCNNNNNNNGC 8 cut(s) 76, 79, 82, 91, 506, 724, 746, 810
HpySE526I ACGT 2 cut(s) 223, 241
Hsp92I GRCGYC 6 cut(s) 129, 390, 498, 507, 525, 620
Hsp92II CATG 4 cut(s) 205, 484, 580, 589
HspAI GCGC 8 cut(s) 216, 390, 478, 484, 486, 515, 525, 620
KasI GGCGCC 3 cut(s) 389, 524, 619
LmnI GCTCC 8 cut(s) 41, 288, 377, 536, 548, 587, 599, 642
LweI GCATC 2 cut(s) 128, 204
MaeII ACGT 2 cut(s) 223, 241
MaeIII GTNAC 1 cut(s) 566
MboII GAAGA 2 cut(s) 220, 842
MhlI GDGCHC 6 cut(s) 33, 249, 303, 584, 596, 810
MluCI AATT 4 cut(s) 7, 760, 781, 814
Mly113I GGCGCC 3 cut(s) 390, 525, 620
MlyI GAGTC 1 cut(s) 685
MmeI TCCRAC 4 cut(s) 285, 429, 450, 803
MseI TTAA 1 cut(s) 844
MslI CAYNNNNRTG 1 cut(s) 200
MspI CCGG 6 cut(s) 184, 321, 327, 387, 665, 770
MspR9I CCNGG 5 cut(s) 185, 293, 546, 605, 771
Mva1269I GAATGC 1 cut(s) 703
MvaI CCWGG 3 cut(s) 293, 546, 605
MvnI CGCG 3 cut(s) 486, 515, 841
MwoI GCNNNNNNNGC 8 cut(s) 76, 79, 82, 91, 506, 724, 746, 810
NarI GGCGCC 3 cut(s) 390, 525, 620
NciI CCSGG 2 cut(s) 185, 771
NlaIII CATG 4 cut(s) 205, 484, 580, 589
NmeAIII GCCGAG 5 cut(s) 228, 322, 426, 450, 722
NmuCI GTSAC 1 cut(s) 566
NspI RCATGY 2 cut(s) 205, 484
PaeI GCATGC 2 cut(s) 205, 484
PasI CCCWGGG 1 cut(s) 604
PauI GCGCGC 1 cut(s) 484
PcsI WCGNNNNNNNCGW 1 cut(s) 528
PctI GAATGC 1 cut(s) 703
PflMI CCANNNNNTGG 1 cut(s) 279
PfoI TCCNGGA 1 cut(s) 769
PleI GAGTC 1 cut(s) 684
PluTI GGCGCC 3 cut(s) 393, 528, 623
PmaCI CACGTG 2 cut(s) 224, 242
PmlI CACGTG 2 cut(s) 224, 242
PpsI GAGTC 1 cut(s) 684
Ppu21I YACGTR 2 cut(s) 224, 242
Psp124BI GAGCTC 3 cut(s) 33, 249, 584
Psp6I CCWGG 3 cut(s) 291, 544, 603
PspCI CACGTG 2 cut(s) 224, 242
PspEI GGTNACC 1 cut(s) 566
PspFI CCCAGC 2 cut(s) 102, 589
PspGI CCWGG 3 cut(s) 291, 544, 603
PspPI GGNCC 5 cut(s) 16, 160, 187, 452, 542
PteI GCGCGC 1 cut(s) 484
RseI CAYNNNNRTG 1 cut(s) 200
SacI GAGCTC 3 cut(s) 33, 249, 584
SalI GTCGAC 1 cut(s) 176
SaqAI TTAA 1 cut(s) 844
Sau96I GGNCC 5 cut(s) 16, 160, 187, 452, 542
SchI GAGTC 1 cut(s) 685
ScrFI CCNGG 5 cut(s) 185, 293, 546, 605, 771
SduI GDGCHC 6 cut(s) 33, 249, 303, 584, 596, 810
SfaNI GCATC 2 cut(s) 128, 204
SfoI GGCGCC 3 cut(s) 391, 526, 621
SinI GGWCC 2 cut(s) 160, 542
SmiMI CAYNNNNRTG 1 cut(s) 200
SphI GCATGC 2 cut(s) 205, 484
Sse9I AATT 4 cut(s) 7, 760, 781, 814
SspDI GGCGCC 3 cut(s) 389, 524, 619
SstI GAGCTC 3 cut(s) 33, 249, 584
StyD4I CCNGG 5 cut(s) 183, 291, 544, 603, 769
StyI CCWWGG 1 cut(s) 501
TaaI ACNGT 1 cut(s) 355
TaiI ACGT 2 cut(s) 226, 244
TaqI TCGA 2 cut(s) 177, 276
TaqII GACCGA 4 cut(s) 177, 547, 554, 679
TasI AATT 4 cut(s) 7, 760, 781, 814
Tru1I TTAA 1 cut(s) 844
Tru9I TTAA 1 cut(s) 844
TseFI GTSAC 1 cut(s) 566
Tsp45I GTSAC 1 cut(s) 566
TspDTI ATGAA 1 cut(s) 454
TspGWI ACGGA 3 cut(s) 349, 549, 645
Van91I CCANNNNNTGG 1 cut(s) 279
VpaK11BI GGWCC 2 cut(s) 160, 542
XagI CCTNNNNNAGG 1 cut(s) 290
XceI RCATGY 2 cut(s) 205, 484
XmiI GTMKAC 1 cut(s) 177
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.