pycom13g21080
TCP Family

Transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr13
OG0007792
Physical Location & Seq
Reverse (-)
17306344 .. 17307213
870 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom13g21080.1

Sequence Viewer

Length: 870 bp
ATGTCAAATTCCGAGGCGCCTAATAACGAGCTCACTAACGGCGGCAGCGGCGGCGCAGGAGCCATGGTGGAGCAGACCTCGCAGAGGCCGTCAAGTAACGGCGTCTTAGCCGTCAAGAAGCCACCCTCTAAGGACCGACACAGCAAGGTCGACGGACGGGGCCGCCGCATCCGCATGCCCATCATCTGCGCCGCACGTGTCTTCCAGCTCACACGTGAGCTCGGCCACAAGTCCGACGGCCAGACCATCGAGTGGCTCCTCCGCCAGGCCGAGCCCTCCATCATCGCCGCCACCGGCACCGGCACCACCCCTGCCTCCTTCTCCACCGTCTCTGTCTCCCTCCGCGGTGGCAACACCTCCTCTTCCGCCCCCTCCTCTACCACCTCCTCCGATCACAAACCTCAGCTCCTGGGCCCCACCCCCTTCATCCTCGGCAAGCGCGTCCGCGGTTCCCTCGATGACCCCGAAAACCACAGCCACAACCACAACCACAACCACGACGCCTCCGCCGCCAAGGACCCCTCCGACAACCACGCCAACAACGACGGAGCCGTCTCAGTCGTCGGGCACTCCATGGCCTCCATGCTAGGTCCCAACGCAGGGGGACCCGGCGGGTTCTGGGCCCCGCACTTCGGGCAGGTGTGGAGCTTCGCCGCCACACCACCCCCGGAGCTGATGGCTCAGTCAGCGCTGTCCCACCAGCAGCAGCAACAGCATCATCAGCAGCATTCGTTGTTCTTGCAGCAGCAGCCGATGGGCGAGGCCTCGGCTGCCAGAGTGGGAAATTACCTTCCTGGACATCTCAATTTGTTGGCTTCTTTGTCGGGCGGGCACGGCAATTCGGGTCGGAGAGAAGACGACCAGCGTTGA

Protein Analysis

290

Amino Acids

30.49

Weight (kDa)

8.86

Isoelectric Point (pI)

46.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TCP PF03634 43 - 171 6.8e-31 TCP family transcription factor
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 628
AasI GACNNNNNNGTC 1 cut(s) 551
Acc36I ACCTGC 1 cut(s) 628
AccB1I GGYRCC 3 cut(s) 16, 296, 302
AccB7I CCANNNNNTGG 1 cut(s) 252
AccI GTMKAC 1 cut(s) 150
AccII CGCG 3 cut(s) 345, 441, 447
AcoI YGGCCR 2 cut(s) 223, 238
AcsI RAATTY 1 cut(s) 7
AcvI CACGTG 2 cut(s) 197, 215
AcyI GRCGYC 3 cut(s) 17, 102, 501
AfeI AGCGCT 1 cut(s) 690
AfiI CCNNNNNNNGG 6 cut(s) 84, 252, 265, 599, 600, 632
AflIII ACRYGT 2 cut(s) 196, 212
AjnI CCWGG 3 cut(s) 264, 408, 793
AluBI AGCT 6 cut(s) 31, 208, 220, 406, 648, 673
AluI AGCT 6 cut(s) 31, 208, 220, 406, 648, 673
Alw21I GWGCWC 2 cut(s) 33, 222
Alw26I GTCTC 3 cut(s) 334, 340, 559
AlwNI CAGNNNCTG 1 cut(s) 409
Aor51HI AGCGCT 1 cut(s) 690
AoxI GGCC 9 cut(s) 86, 160, 223, 238, 267, 412, 576, 621, 762
ApaI GGGCCC 2 cut(s) 416, 625
ApeKI GCWGC 8 cut(s) 45, 703, 706, 724, 742, 745, 748, 770
ApoI RAATTY 1 cut(s) 7
AspLEI GCGC 5 cut(s) 19, 56, 191, 441, 691
AspS9I GGNCC 9 cut(s) 133, 160, 412, 413, 517, 590, 605, 621, 622
AsuC2I CCSGG 2 cut(s) 609, 668
AvaII GGWCC 4 cut(s) 133, 517, 590, 605
BaeGI GKGCMC 4 cut(s) 416, 570, 625, 834
BanI GGYRCC 3 cut(s) 16, 296, 302
BanII GRGCYC 5 cut(s) 33, 222, 276, 416, 625
BbrPI CACGTG 2 cut(s) 197, 215
BbsI GAAGAC 2 cut(s) 193, 861
Bbv12I GWGCWC 2 cut(s) 33, 222
BbvCI CCTCAGC 1 cut(s) 402
BbvI GCAGC 8 cut(s) 57, 715, 718, 736, 754, 757, 757, 760
BccI CCATC 5 cut(s) 188, 254, 287, 670, 748
BceAI ACGGC 7 cut(s) 55, 73, 95, 115, 253, 536, 850
BciT130I CCWGG 3 cut(s) 266, 410, 795
BcnI CCSGG 2 cut(s) 609, 668
BcoDI GTCTC 3 cut(s) 334, 340, 559
BfaI CTAG 1 cut(s) 587
BfoI RGCGCY 2 cut(s) 20, 692
BfuAI ACCTGC 1 cut(s) 628
Bme1390I CCNGG 5 cut(s) 266, 410, 609, 668, 795
Bme18I GGWCC 4 cut(s) 133, 517, 590, 605
BmgT120I GGNCC 9 cut(s) 133, 160, 412, 413, 517, 590, 605, 621, 622
BmrFI CCNGG 5 cut(s) 266, 410, 609, 668, 795
BmsI GCATC 2 cut(s) 177, 724
BpiI GAAGAC 2 cut(s) 193, 861
BplI GAGNNNNNCTC 2 cut(s) 62, 94
Bpu10I CCTNAGC 1 cut(s) 402
BpuMI CCSGG 2 cut(s) 609, 668
BsaAI YACGTR 2 cut(s) 197, 215
BsaHI GRCGYC 3 cut(s) 17, 102, 501
BsaXI ACNNNNNCTCC 6 cut(s) 51, 81, 390, 420, 488, 518
Bsc4I CCNNNNNNNGG 6 cut(s) 84, 252, 265, 599, 600, 632
Bse118I RCCGGY 2 cut(s) 293, 299
BseBI CCWGG 3 cut(s) 266, 410, 795
BseGI GGATG 2 cut(s) 168, 426
BseLI CCNNNNNNNGG 6 cut(s) 84, 252, 265, 599, 600, 632
BseMII CTCAG 3 cut(s) 416, 570, 695
BseRI GAGGAG 4 cut(s) 248, 349, 364, 376
BseSI GKGCMC 4 cut(s) 416, 570, 625, 834
BseXI GCAGC 8 cut(s) 57, 715, 718, 736, 754, 757, 757, 760
Bsh1236I CGCG 3 cut(s) 345, 441, 447
BshFI GGCC 9 cut(s) 88, 162, 225, 240, 269, 414, 578, 623, 764
BshNI GGYRCC 3 cut(s) 16, 296, 302
BsiHKAI GWGCWC 2 cut(s) 33, 222
BsiSI CCGG 4 cut(s) 294, 300, 609, 668
BslFI GGGAC 3 cut(s) 576, 618, 679
BslI CCNNNNNNNGG 6 cut(s) 84, 252, 265, 599, 600, 632
BsmAI GTCTC 3 cut(s) 334, 340, 559
BsmBI CGTCTC 2 cut(s) 334, 559
BsmFI GGGAC 3 cut(s) 576, 618, 679
BsmI GAATGC 1 cut(s) 727
BsnI GGCC 9 cut(s) 88, 162, 225, 240, 269, 414, 578, 623, 764
Bsp120I GGGCCC 2 cut(s) 412, 621
Bsp1286I GDGCHC 7 cut(s) 33, 222, 276, 416, 570, 625, 834
Bsp143I GATC 1 cut(s) 391
Bsp19I CCATGG 2 cut(s) 63, 573
BspANI GGCC 9 cut(s) 88, 162, 225, 240, 269, 414, 578, 623, 764
BspCNI CTCAG 3 cut(s) 415, 569, 694
BspFNI CGCG 3 cut(s) 345, 441, 447
BspMI ACCTGC 1 cut(s) 628
BspT107I GGYRCC 3 cut(s) 16, 296, 302
BsrFI RCCGGY 2 cut(s) 293, 299
BssAI RCCGGY 2 cut(s) 293, 299
BssMI GATC 1 cut(s) 391
BssNI GRCGYC 3 cut(s) 17, 102, 501
BssT1I CCWWGG 3 cut(s) 63, 513, 573
Bst2UI CCWGG 3 cut(s) 266, 410, 795
Bst4CI ACNGT 1 cut(s) 328
Bst6I CTCTTC 1 cut(s) 367
BstACI GRCGYC 3 cut(s) 17, 102, 501
BstBAI YACGTR 2 cut(s) 197, 215
BstC8I GCNNGC 3 cut(s) 176, 437, 830
BstDEI CTNAG 5 cut(s) 106, 129, 402, 556, 681
BstDSI CCRYGG 4 cut(s) 63, 343, 445, 573
BstENI CCTNNNNNAGG 2 cut(s) 82, 263
BstF5I GGATG 2 cut(s) 168, 426
BstFNI CGCG 3 cut(s) 345, 441, 447
BstH2I RGCGCY 2 cut(s) 20, 692
BstHHI GCGC 5 cut(s) 19, 56, 191, 441, 691
BstKTI GATC 1 cut(s) 394
BstMAI GTCTC 3 cut(s) 334, 340, 559
BstMBI GATC 1 cut(s) 391
BstNI CCWGG 3 cut(s) 266, 410, 795
BstNSI RCATGY 1 cut(s) 178
BstSCI CCNGG 5 cut(s) 264, 408, 607, 666, 793
BstSLI GKGCMC 4 cut(s) 416, 570, 625, 834
BstUI CGCG 3 cut(s) 345, 441, 447
BstV1I GCAGC 8 cut(s) 57, 715, 718, 736, 754, 757, 757, 760
BstV2I GAAGAC 2 cut(s) 193, 861
BsuRI GGCC 9 cut(s) 88, 162, 225, 240, 269, 414, 578, 623, 764
BtgI CCRYGG 4 cut(s) 63, 343, 445, 573
BtgZI GCGATG 1 cut(s) 268
BtsCI GGATG 2 cut(s) 168, 426
BveI ACCTGC 1 cut(s) 628
Cac8I GCNNGC 3 cut(s) 176, 437, 830
CaiI CAGNNNCTG 1 cut(s) 409
CfoI GCGC 5 cut(s) 19, 56, 191, 441, 691
Cfr10I RCCGGY 2 cut(s) 293, 299
Cfr13I GGNCC 9 cut(s) 133, 160, 412, 413, 517, 590, 605, 621, 622
Cfr42I CCGCGG 2 cut(s) 346, 448
CseI GACGC 3 cut(s) 91, 430, 509
CviAII CATG 4 cut(s) 64, 175, 574, 583
DdeI CTNAG 5 cut(s) 106, 129, 402, 556, 681
DinI GGCGCC 1 cut(s) 18
DpnI GATC 1 cut(s) 393
DpnII GATC 1 cut(s) 391
DrdI GACNNNNNNGTC 1 cut(s) 551
DseDI GACNNNNNNGTC 1 cut(s) 551
EaeI YGGCCR 2 cut(s) 223, 238
Eam1104I CTCTTC 1 cut(s) 367
EarI CTCTTC 1 cut(s) 367
EciI GGCGGA 3 cut(s) 251, 355, 496
Ecl136II GAGCTC 2 cut(s) 31, 220
Eco130I CCWWGG 3 cut(s) 63, 513, 573
Eco147I AGGCCT 1 cut(s) 764
Eco24I GRGCYC 5 cut(s) 33, 222, 276, 416, 625
Eco47I GGWCC 4 cut(s) 133, 517, 590, 605
Eco47III AGCGCT 1 cut(s) 690
Eco53kI GAGCTC 2 cut(s) 31, 220
Eco72I CACGTG 2 cut(s) 197, 215
EcoICRI GAGCTC 2 cut(s) 31, 220
EcoNI CCTNNNNNAGG 2 cut(s) 82, 263
EcoO109I RGGNCCY 5 cut(s) 413, 517, 590, 605, 622
EcoRII CCWGG 3 cut(s) 264, 408, 793
EcoT14I CCWWGG 3 cut(s) 63, 513, 573
EcoT38I GRGCYC 5 cut(s) 33, 222, 276, 416, 625
EgeI GGCGCC 1 cut(s) 18
EheI GGCGCC 1 cut(s) 18
ErhI CCWWGG 3 cut(s) 63, 513, 573
Esp3I CGTCTC 2 cut(s) 334, 559
FaeI CATG 4 cut(s) 67, 178, 577, 586
FaiI YATR 4 cut(s) 65, 176, 575, 584
FaqI GGGAC 3 cut(s) 576, 618, 679
FatI CATG 4 cut(s) 63, 174, 573, 582
FauI CCCGC 3 cut(s) 605, 633, 821
FblI GTMKAC 1 cut(s) 150
FokI GGATG 2 cut(s) 155, 413
FriOI GRGCYC 5 cut(s) 33, 222, 276, 416, 625
FspBI CTAG 1 cut(s) 587
GlaI GCGC 5 cut(s) 18, 55, 190, 440, 690
HaeII RGCGCY 2 cut(s) 20, 692
HaeIII GGCC 9 cut(s) 88, 162, 225, 240, 269, 414, 578, 623, 764
HapII CCGG 4 cut(s) 294, 300, 609, 668
HgaI GACGC 3 cut(s) 91, 430, 509
HhaI GCGC 5 cut(s) 19, 56, 191, 441, 691
Hin1I GRCGYC 3 cut(s) 17, 102, 501
Hin1II CATG 4 cut(s) 67, 178, 577, 586
Hin6I GCGC 5 cut(s) 17, 54, 189, 439, 689
HinP1I GCGC 5 cut(s) 17, 54, 189, 439, 689
HincII GTYRAC 1 cut(s) 151
HindII GTYRAC 1 cut(s) 151
HpaII CCGG 4 cut(s) 294, 300, 609, 668
Hpy166II GTNNAC 1 cut(s) 151
Hpy188I TCNGA 5 cut(s) 13, 235, 391, 526, 849
Hpy188III TCNNGA 1 cut(s) 115
Hpy8I GTNNAC 1 cut(s) 151
Hpy99I CGWCG 5 cut(s) 155, 239, 503, 548, 566
HpyAV CCTTC 3 cut(s) 328, 433, 800
HpyCH4III ACNGT 1 cut(s) 328
HpyCH4IV ACGT 2 cut(s) 196, 214
HpyCH4V TGCA 1 cut(s) 742
HpyF3I CTNAG 5 cut(s) 106, 129, 402, 556, 681
HpySE526I ACGT 2 cut(s) 196, 214
Hsp92I GRCGYC 3 cut(s) 17, 102, 501
Hsp92II CATG 4 cut(s) 67, 178, 577, 586
HspAI GCGC 5 cut(s) 17, 54, 189, 439, 689
KasI GGCGCC 1 cut(s) 16
KflI GGGWCCC 1 cut(s) 605
KspI CCGCGG 2 cut(s) 346, 448
Kzo9I GATC 1 cut(s) 391
LmnI GCTCC 7 cut(s) 59, 70, 261, 411, 548, 645, 670
Lsp1109I GCAGC 8 cut(s) 57, 715, 718, 736, 754, 757, 757, 760
LweI GCATC 2 cut(s) 177, 724
MaeI CTAG 1 cut(s) 587
MaeII ACGT 2 cut(s) 196, 214
MaeIII GTNAC 1 cut(s) 95
MalI GATC 1 cut(s) 393
MboI GATC 1 cut(s) 391
MboII GAAGA 3 cut(s) 193, 354, 866
MhlI GDGCHC 7 cut(s) 33, 222, 276, 416, 570, 625, 834
MluCI AATT 4 cut(s) 7, 784, 805, 838
Mly113I GGCGCC 1 cut(s) 17
MmeI TCCRAC 3 cut(s) 258, 549, 827
MslI CAYNNNNRTG 1 cut(s) 173
MspA1I CMGCKG 3 cut(s) 48, 345, 447
MspI CCGG 4 cut(s) 294, 300, 609, 668
MspR9I CCNGG 5 cut(s) 266, 410, 609, 668, 795
Mva1269I GAATGC 1 cut(s) 727
MvaI CCWGG 3 cut(s) 266, 410, 795
MvnI CGCG 3 cut(s) 345, 441, 447
NarI GGCGCC 1 cut(s) 17
NciI CCSGG 2 cut(s) 609, 668
NcoI CCATGG 2 cut(s) 63, 573
NdeII GATC 1 cut(s) 391
NlaIII CATG 4 cut(s) 67, 178, 577, 586
NmeAIII GCCGAG 4 cut(s) 201, 295, 411, 746
NspI RCATGY 1 cut(s) 178
PaeI GCATGC 1 cut(s) 178
PaqCI CACCTGC 1 cut(s) 628
PceI AGGCCT 1 cut(s) 764
PcsI WCGNNNNNNNCGW 5 cut(s) 86, 438, 462, 540, 549
PctI GAATGC 1 cut(s) 727
PflMI CCANNNNNTGG 1 cut(s) 252
PfoI TCCNGGA 1 cut(s) 793
PluTI GGCGCC 1 cut(s) 20
PmaCI CACGTG 2 cut(s) 197, 215
PmlI CACGTG 2 cut(s) 197, 215
Ppu21I YACGTR 2 cut(s) 197, 215
PpuMI RGGWCCY 3 cut(s) 517, 590, 605
Psp124BI GAGCTC 2 cut(s) 33, 222
Psp5II RGGWCCY 3 cut(s) 517, 590, 605
Psp6I CCWGG 3 cut(s) 264, 408, 793
PspCI CACGTG 2 cut(s) 197, 215
PspGI CCWGG 3 cut(s) 264, 408, 793
PspOMI GGGCCC 2 cut(s) 412, 621
PspPI GGNCC 9 cut(s) 133, 160, 412, 413, 517, 590, 605, 621, 622
PspPPI RGGWCCY 3 cut(s) 517, 590, 605
PstNI CAGNNNCTG 1 cut(s) 409
RseI CAYNNNNRTG 1 cut(s) 173
SacI GAGCTC 2 cut(s) 33, 222
SacII CCGCGG 2 cut(s) 346, 448
SalI GTCGAC 1 cut(s) 149
Sau3AI GATC 1 cut(s) 391
Sau96I GGNCC 9 cut(s) 133, 160, 412, 413, 517, 590, 605, 621, 622
ScrFI CCNGG 5 cut(s) 266, 410, 609, 668, 795
SduI GDGCHC 7 cut(s) 33, 222, 276, 416, 570, 625, 834
SfaNI GCATC 2 cut(s) 177, 724
SfoI GGCGCC 1 cut(s) 18
Sfr303I CCGCGG 2 cut(s) 346, 448
SgrBI CCGCGG 2 cut(s) 346, 448
SinI GGWCC 4 cut(s) 133, 517, 590, 605
SmiMI CAYNNNNRTG 1 cut(s) 173
SphI GCATGC 1 cut(s) 178
Sse9I AATT 4 cut(s) 7, 784, 805, 838
SseBI AGGCCT 1 cut(s) 764
SspDI GGCGCC 1 cut(s) 16
SspMI CTAG 1 cut(s) 587
SstI GAGCTC 2 cut(s) 33, 222
StuI AGGCCT 1 cut(s) 764
StyD4I CCNGG 5 cut(s) 264, 408, 607, 666, 793
StyI CCWWGG 3 cut(s) 63, 513, 573
TaaI ACNGT 1 cut(s) 328
TaiI ACGT 2 cut(s) 199, 217
TaqI TCGA 3 cut(s) 150, 249, 456
TaqII GACCGA 1 cut(s) 150
TasI AATT 4 cut(s) 7, 784, 805, 838
TauI GCSGC 9 cut(s) 45, 51, 54, 165, 168, 194, 290, 512, 656
TseI GCWGC 8 cut(s) 45, 703, 706, 724, 742, 745, 748, 770
TspDTI ATGAA 1 cut(s) 415
TspGWI ACGGA 2 cut(s) 168, 561
Van91I CCANNNNNTGG 1 cut(s) 252
VpaK11BI GGWCC 4 cut(s) 133, 517, 590, 605
XagI CCTNNNNNAGG 2 cut(s) 82, 263
XapI RAATTY 1 cut(s) 7
XceI RCATGY 1 cut(s) 178
XmiI GTMKAC 1 cut(s) 150
XspI CTAG 1 cut(s) 587
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.