MD13G1238400.v1.1
TCP Family

Transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr13
OG0007792
Physical Location & Seq
Reverse (-)
24219020 .. 24221263
2244 bp
Loading structure...
UTR
Exon/CDS
Intron
MD13G1238400.v1.1.491

Sequence Viewer

Length: 867 bp
ATGTCAAATTCCGAGGCGCCTAATAACGAGCTCACTAACGGCGGCGGCGGCGCAGGAGCTATGGTGGAGCAGACCTCGCAGAGGCCGTCAAGTAACGGCGTCTTAGCCGTCAAGAAGCCACCCTCTAAGGACCGACACAGCAAGGTCGACGGACGGGGCCGCCGCATCCGCATGCCCATCATCTGCGCCGCACGTGTCTTCCAGCTCACACGTGAGCTCGGCCACAAGTCCGACGGCCAGACCATCGAGTGGCTCCTCCGCCAGGCCGAGCCCTCCATCATCGCCGCCACCGGCACGGGCACCACCCCAGCCTCCTTCTCCACCGTCTCCGTCTCCCTCCGCGGTGGCAACACCTCCTCTTCCGCCCCCTCCACCACCTCCTCCGATCACAAACCGCAGCTACTGGGCCCCACCCCCTTCATCCTCGGCAAGCGCGTCCGCGGTTCCCTCGACGACCCCGAAAACAACCACAGCCACAACCACAACCACAACCACGACGCCTCCGCCGCCAAGGACCCCTCCGACAACCACGCCAACAACGACGGAGCCGTCTCAGTCGTCGGGCACTCCATGGCCTCCATGCTAGGCCCCAACGCAGGGGGACCCGGCGGGTTCTGGGCCCCGCACTTCGGGCAGGTGTGGAGCTTCGCCGCCACACCGCCCCCGGAGCTGATGGCCCAGTCAGCGCTGTCCCACCAGCAGCAGCAACAGCACCATCAGCAGCATTCGTTGTTCTTGCAGCAGCAGCCGATGGGCGAGGCCTCGGCTGCCAGAGTGGGAAATTACCTTCCTGGACATCTCAATTTGTTGGCTTCTTTGTCGGGCGGGCACGGAAATTCGGGTCGGAGAGAAGACGACCAGCGTTGA

Protein Analysis

289

Amino Acids

30.43

Weight (kDa)

8.86

Isoelectric Point (pI)

46.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TCP PF03634 42 - 171 4.3e-31 TCP family transcription factor
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 625
AasI GACNNNNNNGTC 1 cut(s) 548
Acc36I ACCTGC 1 cut(s) 625
AccB1I GGYRCC 2 cut(s) 16, 299
AccB7I CCANNNNNTGG 1 cut(s) 249
AccI GTMKAC 1 cut(s) 147
AccII CGCG 3 cut(s) 342, 435, 441
AcoI YGGCCR 2 cut(s) 220, 235
AcsI RAATTY 2 cut(s) 7, 835
AcvI CACGTG 2 cut(s) 194, 212
AcyI GRCGYC 3 cut(s) 17, 99, 498
AfeI AGCGCT 1 cut(s) 687
AfiI CCNNNNNNNGG 6 cut(s) 81, 249, 262, 596, 597, 629
AflIII ACRYGT 2 cut(s) 193, 209
AjnI CCWGG 2 cut(s) 261, 790
AluBI AGCT 7 cut(s) 31, 59, 205, 217, 400, 645, 670
AluI AGCT 7 cut(s) 31, 59, 205, 217, 400, 645, 670
Alw21I GWGCWC 2 cut(s) 33, 219
Alw26I GTCTC 3 cut(s) 331, 337, 556
AlwNI CAGNNNCTG 1 cut(s) 403
Aor51HI AGCGCT 1 cut(s) 687
ApaI GGGCCC 2 cut(s) 410, 622
ApeKI GCWGC 8 cut(s) 397, 700, 703, 721, 739, 742, 745, 767
ApoI RAATTY 2 cut(s) 7, 835
AspLEI GCGC 5 cut(s) 19, 53, 188, 435, 688
AsuC2I CCSGG 2 cut(s) 606, 665
AvaII GGWCC 3 cut(s) 130, 514, 602
BaeGI GKGCMC 5 cut(s) 302, 410, 567, 622, 831
BanI GGYRCC 2 cut(s) 16, 299
BanII GRGCYC 5 cut(s) 33, 219, 273, 410, 622
BbrPI CACGTG 2 cut(s) 194, 212
BbsI GAAGAC 2 cut(s) 190, 858
Bbv12I GWGCWC 2 cut(s) 33, 219
BbvI GCAGC 8 cut(s) 409, 712, 715, 733, 751, 754, 754, 757
BccI CCATC 6 cut(s) 185, 251, 284, 667, 723, 745
BceAI ACGGC 6 cut(s) 55, 70, 92, 112, 250, 533
BciT130I CCWGG 2 cut(s) 263, 792
BcnI CCSGG 2 cut(s) 606, 665
BcoDI GTCTC 3 cut(s) 331, 337, 556
BfaI CTAG 1 cut(s) 584
BfoI RGCGCY 2 cut(s) 20, 689
BfuAI ACCTGC 1 cut(s) 625
Bme1390I CCNGG 4 cut(s) 263, 606, 665, 792
Bme18I GGWCC 3 cut(s) 130, 514, 602
BmrFI CCNGG 4 cut(s) 263, 606, 665, 792
BmrI ACTGGG 2 cut(s) 413, 673
BmsI GCATC 1 cut(s) 174
BmuI ACTGGG 2 cut(s) 413, 673
BpiI GAAGAC 2 cut(s) 190, 858
BplI GAGNNNNNCTC 2 cut(s) 59, 91
BpuMI CCSGG 2 cut(s) 606, 665
BsaAI YACGTR 2 cut(s) 194, 212
BsaHI GRCGYC 3 cut(s) 17, 99, 498
BsaJI CCNNGG 8 cut(s) 12, 340, 424, 439, 510, 570, 663, 762
BsaXI ACNNNNNCTCC 4 cut(s) 48, 78, 485, 515
Bsc4I CCNNNNNNNGG 6 cut(s) 81, 249, 262, 596, 597, 629
Bse118I RCCGGY 1 cut(s) 290
Bse1I ACTGG 2 cut(s) 408, 679
BseBI CCWGG 2 cut(s) 263, 792
BseDI CCNNGG 8 cut(s) 12, 340, 424, 439, 510, 570, 663, 762
BseGI GGATG 2 cut(s) 165, 420
BseLI CCNNNNNNNGG 6 cut(s) 81, 249, 262, 596, 597, 629
BseMII CTCAG 1 cut(s) 567
BseNI ACTGG 2 cut(s) 408, 679
BseRI GAGGAG 3 cut(s) 245, 346, 370
BseSI GKGCMC 5 cut(s) 302, 410, 567, 622, 831
BseXI GCAGC 8 cut(s) 409, 712, 715, 733, 751, 754, 754, 757
BseYI CCCAGC 1 cut(s) 307
Bsh1236I CGCG 3 cut(s) 342, 435, 441
BshNI GGYRCC 2 cut(s) 16, 299
BsiHKAI GWGCWC 2 cut(s) 33, 219
BsiSI CCGG 3 cut(s) 291, 606, 665
BslFI GGGAC 2 cut(s) 615, 676
BslI CCNNNNNNNGG 6 cut(s) 81, 249, 262, 596, 597, 629
BsmAI GTCTC 3 cut(s) 331, 337, 556
BsmBI CGTCTC 3 cut(s) 331, 337, 556
BsmFI GGGAC 2 cut(s) 615, 676
BsmI GAATGC 1 cut(s) 724
Bsp120I GGGCCC 2 cut(s) 406, 618
Bsp1286I GDGCHC 8 cut(s) 33, 219, 273, 302, 410, 567, 622, 831
Bsp143I GATC 1 cut(s) 385
Bsp19I CCATGG 1 cut(s) 570
BspCNI CTCAG 1 cut(s) 566
BspFNI CGCG 3 cut(s) 342, 435, 441
BspMI ACCTGC 1 cut(s) 625
BspT107I GGYRCC 2 cut(s) 16, 299
BsrFI RCCGGY 1 cut(s) 290
BsrI ACTGG 2 cut(s) 408, 679
BssAI RCCGGY 1 cut(s) 290
BssECI CCNNGG 8 cut(s) 12, 340, 424, 439, 510, 570, 663, 762
BssMI GATC 1 cut(s) 385
BssNI GRCGYC 3 cut(s) 17, 99, 498
BssT1I CCWWGG 2 cut(s) 510, 570
Bst2UI CCWGG 2 cut(s) 263, 792
Bst4CI ACNGT 1 cut(s) 325
Bst6I CTCTTC 1 cut(s) 364
BstACI GRCGYC 3 cut(s) 17, 99, 498
BstBAI YACGTR 2 cut(s) 194, 212
BstC8I GCNNGC 3 cut(s) 173, 431, 827
BstDEI CTNAG 3 cut(s) 103, 126, 553
BstDSI CCRYGG 3 cut(s) 340, 439, 570
BstENI CCTNNNNNAGG 2 cut(s) 79, 260
BstF5I GGATG 2 cut(s) 165, 420
BstFNI CGCG 3 cut(s) 342, 435, 441
BstH2I RGCGCY 2 cut(s) 20, 689
BstHHI GCGC 5 cut(s) 19, 53, 188, 435, 688
BstKTI GATC 1 cut(s) 388
BstMAI GTCTC 3 cut(s) 331, 337, 556
BstMBI GATC 1 cut(s) 385
BstNI CCWGG 2 cut(s) 263, 792
BstNSI RCATGY 1 cut(s) 175
BstSCI CCNGG 4 cut(s) 261, 604, 663, 790
BstSLI GKGCMC 5 cut(s) 302, 410, 567, 622, 831
BstUI CGCG 3 cut(s) 342, 435, 441
BstV1I GCAGC 8 cut(s) 409, 712, 715, 733, 751, 754, 754, 757
BstV2I GAAGAC 2 cut(s) 190, 858
BtgI CCRYGG 3 cut(s) 340, 439, 570
BtgZI GCGATG 1 cut(s) 265
BtsCI GGATG 2 cut(s) 165, 420
BveI ACCTGC 1 cut(s) 625
Cac8I GCNNGC 3 cut(s) 173, 431, 827
CaiI CAGNNNCTG 1 cut(s) 403
CfoI GCGC 5 cut(s) 19, 53, 188, 435, 688
Cfr10I RCCGGY 1 cut(s) 290
Cfr42I CCGCGG 2 cut(s) 343, 442
CseI GACGC 3 cut(s) 88, 424, 506
CviAII CATG 3 cut(s) 172, 571, 580
DdeI CTNAG 3 cut(s) 103, 126, 553
DinI GGCGCC 1 cut(s) 18
DpnI GATC 1 cut(s) 387
DpnII GATC 1 cut(s) 385
DrdI GACNNNNNNGTC 1 cut(s) 548
DseDI GACNNNNNNGTC 1 cut(s) 548
EaeI YGGCCR 2 cut(s) 220, 235
Eam1104I CTCTTC 1 cut(s) 364
EarI CTCTTC 1 cut(s) 364
EciI GGCGGA 3 cut(s) 248, 352, 493
Ecl136II GAGCTC 2 cut(s) 31, 217
Eco130I CCWWGG 2 cut(s) 510, 570
Eco147I AGGCCT 1 cut(s) 761
Eco24I GRGCYC 5 cut(s) 33, 219, 273, 410, 622
Eco47I GGWCC 3 cut(s) 130, 514, 602
Eco47III AGCGCT 1 cut(s) 687
Eco53kI GAGCTC 2 cut(s) 31, 217
Eco72I CACGTG 2 cut(s) 194, 212
EcoICRI GAGCTC 2 cut(s) 31, 217
EcoNI CCTNNNNNAGG 2 cut(s) 79, 260
EcoO109I RGGNCCY 5 cut(s) 407, 514, 587, 602, 619
EcoRII CCWGG 2 cut(s) 261, 790
EcoT14I CCWWGG 2 cut(s) 510, 570
EcoT38I GRGCYC 5 cut(s) 33, 219, 273, 410, 622
EgeI GGCGCC 1 cut(s) 18
EheI GGCGCC 1 cut(s) 18
ErhI CCWWGG 2 cut(s) 510, 570
Esp3I CGTCTC 3 cut(s) 331, 337, 556
FaeI CATG 3 cut(s) 175, 574, 583
FaiI YATR 4 cut(s) 62, 173, 572, 581
FaqI GGGAC 2 cut(s) 615, 676
FatI CATG 3 cut(s) 171, 570, 579
FauI CCCGC 3 cut(s) 602, 630, 818
FblI GTMKAC 1 cut(s) 147
FokI GGATG 2 cut(s) 152, 407
FriOI GRGCYC 5 cut(s) 33, 219, 273, 410, 622
FspBI CTAG 1 cut(s) 584
GlaI GCGC 5 cut(s) 18, 52, 187, 434, 687
GsaI CCCAGC 1 cut(s) 311
HaeII RGCGCY 2 cut(s) 20, 689
HapII CCGG 3 cut(s) 291, 606, 665
HgaI GACGC 3 cut(s) 88, 424, 506
HhaI GCGC 5 cut(s) 19, 53, 188, 435, 688
Hin1I GRCGYC 3 cut(s) 17, 99, 498
Hin1II CATG 3 cut(s) 175, 574, 583
Hin6I GCGC 5 cut(s) 17, 51, 186, 433, 686
HinP1I GCGC 5 cut(s) 17, 51, 186, 433, 686
HincII GTYRAC 1 cut(s) 148
HindII GTYRAC 1 cut(s) 148
HpaII CCGG 3 cut(s) 291, 606, 665
Hpy166II GTNNAC 1 cut(s) 148
Hpy188I TCNGA 5 cut(s) 13, 232, 385, 523, 846
Hpy188III TCNNGA 1 cut(s) 112
Hpy8I GTNNAC 1 cut(s) 148
Hpy99I CGWCG 6 cut(s) 152, 236, 455, 500, 545, 563
HpyAV CCTTC 3 cut(s) 325, 427, 797
HpyCH4III ACNGT 1 cut(s) 325
HpyCH4IV ACGT 2 cut(s) 193, 211
HpyCH4V TGCA 1 cut(s) 739
HpyF3I CTNAG 3 cut(s) 103, 126, 553
HpySE526I ACGT 2 cut(s) 193, 211
Hsp92I GRCGYC 3 cut(s) 17, 99, 498
Hsp92II CATG 3 cut(s) 175, 574, 583
HspAI GCGC 5 cut(s) 17, 51, 186, 433, 686
KasI GGCGCC 1 cut(s) 16
KflI GGGWCCC 1 cut(s) 602
KspI CCGCGG 2 cut(s) 343, 442
Kzo9I GATC 1 cut(s) 385
LmnI GCTCC 6 cut(s) 56, 67, 258, 545, 642, 667
Lsp1109I GCAGC 8 cut(s) 409, 712, 715, 733, 751, 754, 754, 757
LweI GCATC 1 cut(s) 174
MaeI CTAG 1 cut(s) 584
MaeII ACGT 2 cut(s) 193, 211
MaeIII GTNAC 1 cut(s) 92
MalI GATC 1 cut(s) 387
MboI GATC 1 cut(s) 385
MboII GAAGA 3 cut(s) 190, 351, 863
MhlI GDGCHC 8 cut(s) 33, 219, 273, 302, 410, 567, 622, 831
MluCI AATT 4 cut(s) 7, 781, 802, 835
Mly113I GGCGCC 1 cut(s) 17
MmeI TCCRAC 3 cut(s) 255, 546, 824
MslI CAYNNNNRTG 1 cut(s) 170
MspA1I CMGCKG 2 cut(s) 342, 441
MspI CCGG 3 cut(s) 291, 606, 665
MspR9I CCNGG 4 cut(s) 263, 606, 665, 792
Mva1269I GAATGC 1 cut(s) 724
MvaI CCWGG 2 cut(s) 263, 792
MvnI CGCG 3 cut(s) 342, 435, 441
NarI GGCGCC 1 cut(s) 17
NciI CCSGG 2 cut(s) 606, 665
NcoI CCATGG 1 cut(s) 570
NdeII GATC 1 cut(s) 385
NlaIII CATG 3 cut(s) 175, 574, 583
NmeAIII GCCGAG 4 cut(s) 198, 292, 405, 743
NspI RCATGY 1 cut(s) 175
PaeI GCATGC 1 cut(s) 175
PaqCI CACCTGC 1 cut(s) 625
PceI AGGCCT 1 cut(s) 761
PcsI WCGNNNNNNNCGW 5 cut(s) 83, 432, 456, 537, 546
PctI GAATGC 1 cut(s) 724
PflMI CCANNNNNTGG 1 cut(s) 249
PfoI TCCNGGA 1 cut(s) 790
PluTI GGCGCC 1 cut(s) 20
PmaCI CACGTG 2 cut(s) 194, 212
PmlI CACGTG 2 cut(s) 194, 212
Ppu21I YACGTR 2 cut(s) 194, 212
PpuMI RGGWCCY 2 cut(s) 514, 602
Psp124BI GAGCTC 2 cut(s) 33, 219
Psp5II RGGWCCY 2 cut(s) 514, 602
Psp6I CCWGG 2 cut(s) 261, 790
PspCI CACGTG 2 cut(s) 194, 212
PspFI CCCAGC 1 cut(s) 307
PspGI CCWGG 2 cut(s) 261, 790
PspOMI GGGCCC 2 cut(s) 406, 618
PspPPI RGGWCCY 2 cut(s) 514, 602
PstNI CAGNNNCTG 1 cut(s) 403
RseI CAYNNNNRTG 1 cut(s) 170
SacI GAGCTC 2 cut(s) 33, 219
SacII CCGCGG 2 cut(s) 343, 442
SalI GTCGAC 1 cut(s) 146
Sau3AI GATC 1 cut(s) 385
ScrFI CCNGG 4 cut(s) 263, 606, 665, 792
SduI GDGCHC 8 cut(s) 33, 219, 273, 302, 410, 567, 622, 831
SfaNI GCATC 1 cut(s) 174
SfoI GGCGCC 1 cut(s) 18
Sfr303I CCGCGG 2 cut(s) 343, 442
SgrBI CCGCGG 2 cut(s) 343, 442
SinI GGWCC 3 cut(s) 130, 514, 602
SmiMI CAYNNNNRTG 1 cut(s) 170
SphI GCATGC 1 cut(s) 175
Sse9I AATT 4 cut(s) 7, 781, 802, 835
SseBI AGGCCT 1 cut(s) 761
SspDI GGCGCC 1 cut(s) 16
SspMI CTAG 1 cut(s) 584
SstI GAGCTC 2 cut(s) 33, 219
StuI AGGCCT 1 cut(s) 761
StyD4I CCNGG 4 cut(s) 261, 604, 663, 790
StyI CCWWGG 2 cut(s) 510, 570
TaaI ACNGT 1 cut(s) 325
TaiI ACGT 2 cut(s) 196, 214
TaqI TCGA 3 cut(s) 147, 246, 450
TaqII GACCGA 1 cut(s) 147
TasI AATT 4 cut(s) 7, 781, 802, 835
TauI GCSGC 9 cut(s) 45, 48, 51, 162, 165, 191, 287, 509, 653
TseI GCWGC 8 cut(s) 397, 700, 703, 721, 739, 742, 745, 767
TspDTI ATGAA 1 cut(s) 409
TspGWI ACGGA 4 cut(s) 165, 319, 558, 846
Van91I CCANNNNNTGG 1 cut(s) 249
VpaK11BI GGWCC 3 cut(s) 130, 514, 602
XagI CCTNNNNNAGG 2 cut(s) 79, 260
XapI RAATTY 2 cut(s) 7, 835
XceI RCATGY 1 cut(s) 175
XmiI GTMKAC 1 cut(s) 147
XspI CTAG 1 cut(s) 584
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.