Rh4CG096400
TCP Family

Transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4C
OG0007792
Physical Location & Seq
Reverse (-)
17335004 .. 17338973
3970 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4CG096400.1

Sequence Viewer

Length: 849 bp
ATGTCTAATTCCGAGGCCCCGAATAACGAGCTCTCCAATGGAGCAGCAGCTATGCTGATGGAAAGACAGCAGCAGCAGCAGCAGCAGCAGCAACAGCAACAGACCCAGCAACAGACGGCGGCATCTAACGGCGTCTTGGCCGTCAAGAAGCCGCCGTCAAAGGACCGACACAGCAAGGTCGACGGCCGGGGCCGACGCATCCGCATGCCCATCATCTGCGCCGCACGCGTCTTCCAGCTCACACGTGAGCTCGGCCACAAGTCCGACGGCCAGACCATCGAGTGGCTCCTCCGCCAGGCCGAGCCCTCCATCATCGCCGCCACCGGCACCGGCACCACTCCCGCCAGCTTCTCCACCGTCTCCGTCTCCCTCCGCGGCGGAGCCTCCTCCGGCGCCGCCTCCCTCTCCAACTCCTCCACTACTTCCTCCAACGACCACAAGCCCCTCCTCGGCGGCCCCACCCCCTTCATCCTCGGCAAGCGCATGCGCGCCGACGACGACGCCAAGGACGCCGACGCGCACCACGGCGCCACCGACGGAGCAGGACCAGGAGCAGTCTCGGTCGTCGGTCACCACTCCATGAGCTCCATGCTGGGCTCCGCCGCCCAGGGAGGGTTCTGGGCGCCGCACTACGGACAAGTCTGGAGCTTCGCCACCACGCCGCCGCCGGAAATGATGAGTCAGCAGCAGTCGGTCTCCCAACAGCATTCTTTGTTCTTGCCGCAGCAGCCGATGGGGGAAGCCTCGGCGGCAAGAGTGGGAAATTACCTTCCGGGACATCTCAATTTGTTGGCTTCTTTGTCGGGCGGGCACGGCAATTCGGGTCGGAGAGAAGACGACCAGCGTTAA

Protein Analysis

282

Amino Acids

29.79

Weight (kDa)

9.2

Isoelectric Point (pI)

48.94

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TCP PF03634 53 - 137 3.3e-29 TCP family transcription factor
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 5 cut(s) 326, 332, 392, 527, 622
AccB7I CCANNNNNTGG 1 cut(s) 282
AccI GTMKAC 1 cut(s) 180
AccII CGCG 4 cut(s) 228, 375, 489, 518
AcoI YGGCCR 4 cut(s) 138, 184, 253, 268
AcvI CACGTG 1 cut(s) 245
AcyI GRCGYC 6 cut(s) 132, 393, 501, 510, 528, 623
AfiI CCNNNNNNNGG 5 cut(s) 282, 295, 449, 612, 632
AflIII ACRYGT 2 cut(s) 226, 242
AjnI CCWGG 3 cut(s) 294, 547, 606
AluBI AGCT 7 cut(s) 31, 50, 238, 250, 348, 585, 648
AluI AGCT 7 cut(s) 31, 50, 238, 250, 348, 585, 648
Alw21I GWGCWC 3 cut(s) 33, 252, 587
Alw26I GTCTC 4 cut(s) 364, 370, 562, 700
AoxI GGCC 8 cut(s) 15, 138, 184, 190, 253, 268, 297, 454
AspLEI GCGC 8 cut(s) 221, 395, 483, 489, 491, 520, 530, 625
AspS9I GGNCC 5 cut(s) 16, 163, 190, 455, 545
AsuC2I CCSGG 2 cut(s) 188, 774
AsuHPI GGTGA 1 cut(s) 563
AvaII GGWCC 2 cut(s) 163, 545
BaeGI GKGCMC 1 cut(s) 813
BanI GGYRCC 5 cut(s) 326, 332, 392, 527, 622
BanII GRGCYC 5 cut(s) 33, 252, 306, 587, 599
BbrPI CACGTG 1 cut(s) 245
BbsI GAAGAC 2 cut(s) 223, 840
Bbv12I GWGCWC 3 cut(s) 33, 252, 587
BccI CCATC 5 cut(s) 52, 218, 284, 317, 727
BceAI ACGGC 8 cut(s) 125, 132, 139, 145, 199, 283, 541, 829
BciT130I CCWGG 3 cut(s) 296, 549, 608
BcnI CCSGG 2 cut(s) 188, 774
BcoDI GTCTC 4 cut(s) 364, 370, 562, 700
BfoI RGCGCY 3 cut(s) 396, 531, 626
BglI GCCNNNNNGGC 1 cut(s) 749
Bme1390I CCNGG 5 cut(s) 188, 296, 549, 608, 774
Bme18I GGWCC 2 cut(s) 163, 545
BmgT120I GGNCC 5 cut(s) 16, 163, 190, 455, 545
BmrFI CCNGG 5 cut(s) 188, 296, 549, 608, 774
BmsI GCATC 2 cut(s) 131, 207
BpiI GAAGAC 2 cut(s) 223, 840
BpmI CTGGAG 1 cut(s) 664
BpuMI CCSGG 2 cut(s) 188, 774
BsaAI YACGTR 1 cut(s) 245
BsaHI GRCGYC 6 cut(s) 132, 393, 501, 510, 528, 623
BsaI GGTCTC 1 cut(s) 700
BsaXI ACNNNNNCTCC 2 cut(s) 17, 47
Bsc4I CCNNNNNNNGG 5 cut(s) 282, 295, 449, 612, 632
Bse118I RCCGGY 2 cut(s) 323, 329
BseBI CCWGG 3 cut(s) 296, 549, 608
BseGI GGATG 2 cut(s) 198, 468
BseLI CCNNNNNNNGG 5 cut(s) 282, 295, 449, 612, 632
BsePI GCGCGC 1 cut(s) 487
BseRI GAGGAG 4 cut(s) 278, 376, 403, 437
BseSI GKGCMC 1 cut(s) 813
BseX3I CGGCCG 1 cut(s) 184
BseYI CCCAGC 2 cut(s) 105, 592
Bsh1236I CGCG 4 cut(s) 228, 375, 489, 518
Bsh1285I CGRYCG 2 cut(s) 187, 564
BshFI GGCC 8 cut(s) 17, 140, 186, 192, 255, 270, 299, 456
BshNI GGYRCC 5 cut(s) 326, 332, 392, 527, 622
BsiEI CGRYCG 2 cut(s) 187, 564
BsiHKAI GWGCWC 3 cut(s) 33, 252, 587
BsiSI CCGG 6 cut(s) 187, 324, 330, 390, 668, 773
BslFI GGGAC 1 cut(s) 789
BslI CCNNNNNNNGG 5 cut(s) 282, 295, 449, 612, 632
BsmAI GTCTC 4 cut(s) 364, 370, 562, 700
BsmBI CGTCTC 2 cut(s) 364, 370
BsmFI GGGAC 1 cut(s) 789
BsmI GAATGC 1 cut(s) 706
BsnI GGCC 8 cut(s) 17, 140, 186, 192, 255, 270, 299, 456
Bso31I GGTCTC 1 cut(s) 700
Bsp1286I GDGCHC 6 cut(s) 33, 252, 306, 587, 599, 813
BspANI GGCC 8 cut(s) 17, 140, 186, 192, 255, 270, 299, 456
BspFNI CGCG 4 cut(s) 228, 375, 489, 518
BspT107I GGYRCC 5 cut(s) 326, 332, 392, 527, 622
BspTNI GGTCTC 1 cut(s) 700
BsrFI RCCGGY 2 cut(s) 323, 329
BssAI RCCGGY 2 cut(s) 323, 329
BssHII GCGCGC 1 cut(s) 487
BssNI GRCGYC 6 cut(s) 132, 393, 501, 510, 528, 623
BssT1I CCWWGG 1 cut(s) 504
Bst2UI CCWGG 3 cut(s) 296, 549, 608
Bst4CI ACNGT 1 cut(s) 358
BstACI GRCGYC 6 cut(s) 132, 393, 501, 510, 528, 623
BstBAI YACGTR 1 cut(s) 245
BstC8I GCNNGC 7 cut(s) 206, 226, 346, 479, 485, 489, 809
BstDSI CCRYGG 2 cut(s) 373, 523
BstEII GGTNACC 1 cut(s) 569
BstENI CCTNNNNNAGG 1 cut(s) 293
BstF5I GGATG 2 cut(s) 198, 468
BstFNI CGCG 4 cut(s) 228, 375, 489, 518
BstH2I RGCGCY 3 cut(s) 396, 531, 626
BstHHI GCGC 8 cut(s) 221, 395, 483, 489, 491, 520, 530, 625
BstMAI GTCTC 4 cut(s) 364, 370, 562, 700
BstMCI CGRYCG 2 cut(s) 187, 564
BstNI CCWGG 3 cut(s) 296, 549, 608
BstNSI RCATGY 2 cut(s) 208, 487
BstPI GGTNACC 1 cut(s) 569
BstSCI CCNGG 5 cut(s) 186, 294, 547, 606, 772
BstSLI GKGCMC 1 cut(s) 813
BstUI CGCG 4 cut(s) 228, 375, 489, 518
BstV2I GAAGAC 2 cut(s) 223, 840
BstZI CGGCCG 1 cut(s) 184
BsuRI GGCC 8 cut(s) 17, 140, 186, 192, 255, 270, 299, 456
BtgI CCRYGG 2 cut(s) 373, 523
BtgZI GCGATG 1 cut(s) 298
BtsCI GGATG 2 cut(s) 198, 468
Cac8I GCNNGC 7 cut(s) 206, 226, 346, 479, 485, 489, 809
CfoI GCGC 8 cut(s) 221, 395, 483, 489, 491, 520, 530, 625
Cfr10I RCCGGY 2 cut(s) 323, 329
Cfr13I GGNCC 5 cut(s) 16, 163, 190, 455, 545
Cfr42I CCGCGG 1 cut(s) 376
CseI GACGC 6 cut(s) 121, 204, 217, 509, 518, 524
CviAII CATG 4 cut(s) 205, 484, 580, 589
DinI GGCGCC 3 cut(s) 394, 529, 624
EaeI YGGCCR 4 cut(s) 138, 184, 253, 268
EagI CGGCCG 1 cut(s) 184
EciI GGCGGA 3 cut(s) 281, 393, 589
Ecl136II GAGCTC 3 cut(s) 31, 250, 585
EclXI CGGCCG 1 cut(s) 184
Eco130I CCWWGG 1 cut(s) 504
Eco24I GRGCYC 5 cut(s) 33, 252, 306, 587, 599
Eco31I GGTCTC 1 cut(s) 700
Eco47I GGWCC 2 cut(s) 163, 545
Eco52I CGGCCG 1 cut(s) 184
Eco53kI GAGCTC 3 cut(s) 31, 250, 585
Eco72I CACGTG 1 cut(s) 245
Eco91I GGTNACC 1 cut(s) 569
EcoICRI GAGCTC 3 cut(s) 31, 250, 585
EcoNI CCTNNNNNAGG 1 cut(s) 293
EcoO109I RGGNCCY 1 cut(s) 16
EcoO65I GGTNACC 1 cut(s) 569
EcoRII CCWGG 3 cut(s) 294, 547, 606
EcoT14I CCWWGG 1 cut(s) 504
EcoT38I GRGCYC 5 cut(s) 33, 252, 306, 587, 599
EgeI GGCGCC 3 cut(s) 394, 529, 624
EheI GGCGCC 3 cut(s) 394, 529, 624
ErhI CCWWGG 1 cut(s) 504
Esp3I CGTCTC 2 cut(s) 364, 370
FaeI CATG 4 cut(s) 208, 487, 583, 592
FaiI YATR 5 cut(s) 53, 206, 485, 581, 590
FaqI GGGAC 1 cut(s) 789
FatI CATG 4 cut(s) 204, 483, 579, 588
FauI CCCGC 2 cut(s) 349, 800
FblI GTMKAC 1 cut(s) 180
FokI GGATG 2 cut(s) 185, 455
FriOI GRGCYC 5 cut(s) 33, 252, 306, 587, 599
GlaI GCGC 8 cut(s) 220, 394, 482, 488, 490, 519, 529, 624
GsaI CCCAGC 2 cut(s) 109, 596
GsuI CTGGAG 1 cut(s) 664
HaeII RGCGCY 3 cut(s) 396, 531, 626
HaeIII GGCC 8 cut(s) 17, 140, 186, 192, 255, 270, 299, 456
HapII CCGG 6 cut(s) 187, 324, 330, 390, 668, 773
HgaI GACGC 6 cut(s) 121, 204, 217, 509, 518, 524
HhaI GCGC 8 cut(s) 221, 395, 483, 489, 491, 520, 530, 625
Hin1I GRCGYC 6 cut(s) 132, 393, 501, 510, 528, 623
Hin1II CATG 4 cut(s) 208, 487, 583, 592
Hin6I GCGC 8 cut(s) 219, 393, 481, 487, 489, 518, 528, 623
HinP1I GCGC 8 cut(s) 219, 393, 481, 487, 489, 518, 528, 623
HincII GTYRAC 1 cut(s) 181
HindII GTYRAC 1 cut(s) 181
HinfI GANTC 1 cut(s) 679
HpaII CCGG 6 cut(s) 187, 324, 330, 390, 668, 773
HphI GGTGA 1 cut(s) 563
Hpy166II GTNNAC 1 cut(s) 181
Hpy188I TCNGA 3 cut(s) 13, 265, 828
Hpy188III TCNNGA 2 cut(s) 145, 643
Hpy8I GTNNAC 1 cut(s) 181
Hpy99I CGWCG 9 cut(s) 185, 198, 269, 497, 500, 503, 518, 539, 569
HpyAV CCTTC 2 cut(s) 475, 779
HpyCH4III ACNGT 1 cut(s) 358
HpyCH4IV ACGT 1 cut(s) 244
HpySE526I ACGT 1 cut(s) 244
Hsp92I GRCGYC 6 cut(s) 132, 393, 501, 510, 528, 623
Hsp92II CATG 4 cut(s) 208, 487, 583, 592
HspAI GCGC 8 cut(s) 219, 393, 481, 487, 489, 518, 528, 623
KasI GGCGCC 3 cut(s) 392, 527, 622
KspI CCGCGG 1 cut(s) 376
LmnI GCTCC 8 cut(s) 41, 291, 380, 539, 551, 590, 602, 645
LweI GCATC 2 cut(s) 131, 207
MaeII ACGT 1 cut(s) 244
MaeIII GTNAC 1 cut(s) 569
MboII GAAGA 2 cut(s) 223, 845
MhlI GDGCHC 6 cut(s) 33, 252, 306, 587, 599, 813
MluCI AATT 4 cut(s) 7, 763, 784, 817
MluI ACGCGT 1 cut(s) 226
Mly113I GGCGCC 3 cut(s) 393, 528, 623
MlyI GAGTC 1 cut(s) 688
MmeI TCCRAC 4 cut(s) 288, 432, 453, 806
MseI TTAA 1 cut(s) 847
MslI CAYNNNNRTG 1 cut(s) 203
MspA1I CMGCKG 1 cut(s) 375
MspI CCGG 6 cut(s) 187, 324, 330, 390, 668, 773
MspR9I CCNGG 5 cut(s) 188, 296, 549, 608, 774
Mva1269I GAATGC 1 cut(s) 706
MvaI CCWGG 3 cut(s) 296, 549, 608
MvnI CGCG 4 cut(s) 228, 375, 489, 518
NarI GGCGCC 3 cut(s) 393, 528, 623
NciI CCSGG 2 cut(s) 188, 774
NlaIII CATG 4 cut(s) 208, 487, 583, 592
NmeAIII GCCGAG 5 cut(s) 231, 325, 429, 453, 725
NmuCI GTSAC 1 cut(s) 569
NspI RCATGY 2 cut(s) 208, 487
PaeI GCATGC 2 cut(s) 208, 487
PasI CCCWGGG 1 cut(s) 607
PauI GCGCGC 1 cut(s) 487
PcsI WCGNNNNNNNCGW 1 cut(s) 531
PctI GAATGC 1 cut(s) 706
PflMI CCANNNNNTGG 1 cut(s) 282
PfoI TCCNGGA 1 cut(s) 772
PleI GAGTC 1 cut(s) 687
PluTI GGCGCC 3 cut(s) 396, 531, 626
PmaCI CACGTG 1 cut(s) 245
PmlI CACGTG 1 cut(s) 245
PpsI GAGTC 1 cut(s) 687
Ppu21I YACGTR 1 cut(s) 245
Psp124BI GAGCTC 3 cut(s) 33, 252, 587
Psp6I CCWGG 3 cut(s) 294, 547, 606
PspCI CACGTG 1 cut(s) 245
PspEI GGTNACC 1 cut(s) 569
PspFI CCCAGC 2 cut(s) 105, 592
PspGI CCWGG 3 cut(s) 294, 547, 606
PspPI GGNCC 5 cut(s) 16, 163, 190, 455, 545
PteI GCGCGC 1 cut(s) 487
RseI CAYNNNNRTG 1 cut(s) 203
SacI GAGCTC 3 cut(s) 33, 252, 587
SacII CCGCGG 1 cut(s) 376
SalI GTCGAC 1 cut(s) 179
SaqAI TTAA 1 cut(s) 847
Sau96I GGNCC 5 cut(s) 16, 163, 190, 455, 545
SchI GAGTC 1 cut(s) 688
ScrFI CCNGG 5 cut(s) 188, 296, 549, 608, 774
SduI GDGCHC 6 cut(s) 33, 252, 306, 587, 599, 813
SfaNI GCATC 2 cut(s) 131, 207
SfoI GGCGCC 3 cut(s) 394, 529, 624
Sfr303I CCGCGG 1 cut(s) 376
SgrBI CCGCGG 1 cut(s) 376
SinI GGWCC 2 cut(s) 163, 545
SmiMI CAYNNNNRTG 1 cut(s) 203
SphI GCATGC 2 cut(s) 208, 487
Sse9I AATT 4 cut(s) 7, 763, 784, 817
SspDI GGCGCC 3 cut(s) 392, 527, 622
SstI GAGCTC 3 cut(s) 33, 252, 587
StyD4I CCNGG 5 cut(s) 186, 294, 547, 606, 772
StyI CCWWGG 1 cut(s) 504
TaaI ACNGT 1 cut(s) 358
TaiI ACGT 1 cut(s) 247
TaqI TCGA 2 cut(s) 180, 279
TaqII GACCGA 4 cut(s) 180, 550, 557, 682
TasI AATT 4 cut(s) 7, 763, 784, 817
Tru1I TTAA 1 cut(s) 847
Tru9I TTAA 1 cut(s) 847
TseFI GTSAC 1 cut(s) 569
Tsp45I GTSAC 1 cut(s) 569
TspDTI ATGAA 1 cut(s) 457
TspGWI ACGGA 3 cut(s) 352, 552, 648
Van91I CCANNNNNTGG 1 cut(s) 282
VpaK11BI GGWCC 2 cut(s) 163, 545
XagI CCTNNNNNAGG 1 cut(s) 293
XceI RCATGY 2 cut(s) 208, 487
XmiI GTMKAC 1 cut(s) 180
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.