Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0007792

Physical Location & Seq

Genomic Coordinates Forward (+)

2680401 .. 2681993

Gene Structure 1593 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G08330.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 720 bp

ATGGCCGACAACGACGGAGCAGTGAGTAACGGCATCATAGTCGAGCAGACGTCAAACAAAGGACCTCTTAACGCCGTTAAGAAACCACCGTCTAAAGATCGACACAGCAAAGTTGACGGAAGAGGAAGAAGGATTCGTATGCCAATCATTTGCGCAGCTCGAGTTTTTCAATTGACCAGAGAGTTAGGTCACAAGTCCGATGGTCAAACCATAGAGTGGCTTCTCCGTCAAGCTGAGCCTTCTATCATAGCCGCCACTGGAACTGGCACTACTCCGGCGAGTTTCTCCACTGCTTCTCTCTCCACTTCTTCTCCGTTTACTCTCGGGAAACGTGTCGTCAGAGCGGAGGAAGGAGAATCCGGCGGCGGAGGAGGAGGAGGGTTAACAGTGGGACACACAATGGGGACTTCGTTAATGGGTGGTGGTGGTTCTGGTGGGTTTTGGGCTGTTCCGGCGAGGCCGGATTTCGGACAAGTCTGGAGCTTTGCAACCGGAGCTCCACCGGAAATGGTTTTTGCGCAGCAGCAGCAACCAGCTACACTCTTCGTCCGCCACCAGCAGCAACAGCAAGCTTCCGCCGCCGCAGCAGCTGCAATGGGTGAGGCTTCAGCAGCTAGAGTTGGGAATTATCTTCCGGGTCATCATCTCAATTTGCTTGCTTCTTTGTCTGGTGGAGCTAACGGGTCGGGTCGGAGGGAAGACGACCACGAACCACGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0042752 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043433 GO:0044092 GO:0044424 GO:0044464 GO:0048519 GO:0050789 GO:0050794 GO:0051090 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0065009 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04712 map04712

Pfam Domains

Protein Families

TCP

Protein Analysis

239

Amino Acids

24.75

Weight (kDa)

9.57

Isoelectric Point (pI)

43.74

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TCP	PF03634	31 - 106	1.9e-28	TCP family transcription factor

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

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Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0007792)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G35560 AT1G72010 AT3G45150 AT3G47620 AT5G08330 AT5G23280 AT5G41030
fragaria_vesca	FvH4_4g06720
malus_domestica	MD13G1238400.v1.1 MD16G1243300.v1.1
prunus_persica	Prupe.1G070500_v2.0.a1 Prupe.1G070500_v2.0.a1 Prupe.1G070500_v2.0.a1
pyrus_communis	pycom13g21080 pycom16g20410
rosa_chinensis	RchiOBHm_Chr4g0398661
rosa_laevigata	RLG00000009336
rosa_multiflora	Rmu_co8332803.1_g000001
rosa_rugosa	Rorug04G0010200
rosa_samantha	Rh4AG088200 Rh4BG084800 Rh4CG096400 Rh4DG079600
rosa_wichuraiana	Rw4G007310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	53
Acc16I	TGCGCA	2 cut(s)	154, 519
AccB7I	CCANNNNNTGG	1 cut(s)	216
AccBSI	CCGCTC	1 cut(s)	344
AciI	CCGC	8 cut(s)	252, 344, 363, 366, 550, 576, 579, 582
AcoI	YGGCCR	1 cut(s)	3
AcuI	CTGAAG	1 cut(s)	591
AcyI	GRCGYC	1 cut(s)	50
AfiI	CCNNNNNNNGG	2 cut(s)	216, 467
AflIII	ACRYGT	1 cut(s)	331
AgsI	TTSAA	1 cut(s)	170
AluBI	AGCT	9 cut(s)	158, 233, 483, 497, 536, 572, 590, 614, 677
AluI	AGCT	9 cut(s)	158, 233, 483, 497, 536, 572, 590, 614, 677
Alw21I	GWGCWC	1 cut(s)	499
AlwNI	CAGNNNCTG	1 cut(s)	590
Ama87I	CYCGRG	2 cut(s)	159, 323
AoxI	GGCC	2 cut(s)	3, 458
ApeKI	GCWGC	9 cut(s)	155, 520, 523, 526, 559, 584, 587, 590, 611
AspLEI	GCGC	2 cut(s)	155, 520
AspS9I	GGNCC	1 cut(s)	62
AsuC2I	CCSGG	1 cut(s)	636
AsuHPI	GGTGA	1 cut(s)	611
AvaI	CYCGRG	2 cut(s)	159, 323
AvaII	GGWCC	1 cut(s)	62
BanII	GRGCYC	1 cut(s)	499
BbsI	GAAGAC	1 cut(s)	705
Bbv12I	GWGCWC	1 cut(s)	499
BbvI	GCAGC	9 cut(s)	167, 532, 535, 538, 571, 577, 596, 599, 623
BccI	CCATC	1 cut(s)	194
BceAI	ACGGC	2 cut(s)	46, 59
BcgI	CGANNNNNNTGC	2 cut(s)	22, 56
BcnI	CCSGG	1 cut(s)	636
BfaI	CTAG	1 cut(s)	615
BlpI	GCTNAGC	1 cut(s)	234
Bme1390I	CCNGG	1 cut(s)	636
Bme18I	GGWCC	1 cut(s)	62
BmeT110I	CYCGRG	2 cut(s)	159, 323
BmgT120I	GGNCC	1 cut(s)	62
BmrFI	CCNGG	1 cut(s)	636
BmsI	GCATC	1 cut(s)	42
BpiI	GAAGAC	1 cut(s)	705
BpmI	CTGGAG	1 cut(s)	499
Bpu1102I	GCTNAGC	1 cut(s)	234
BpuMI	CCSGG	1 cut(s)	636
BsaHI	GRCGYC	1 cut(s)	50
BsaWI	WCCGGW	2 cut(s)	491, 502
BsaXI	ACNNNNNCTCC	4 cut(s)	295, 325, 481, 511
Bsc4I	CCNNNNNNNGG	2 cut(s)	216, 467
Bse1I	ACTGG	2 cut(s)	262, 268
Bse3DI	GCAATG	1 cut(s)	600
BseLI	CCNNNNNNNGG	2 cut(s)	216, 467
BseMI	GCAATG	1 cut(s)	600
BseMII	CTCAG	1 cut(s)	225
BseNI	ACTGG	2 cut(s)	262, 268
BseRI	GAGGAG	3 cut(s)	384, 387, 390
BseXI	GCAGC	9 cut(s)	167, 532, 535, 538, 571, 577, 596, 599, 623
BshFI	GGCC	2 cut(s)	5, 460
BsiHKAI	GWGCWC	1 cut(s)	499
BsiHKCI	CYCGRG	2 cut(s)	159, 323
BsiSI	CCGG	7 cut(s)	275, 360, 452, 461, 492, 503, 635
BslFI	GGGAC	2 cut(s)	405, 418
BslI	CCNNNNNNNGG	2 cut(s)	216, 467
BsmFI	GGGAC	2 cut(s)	405, 418
BsnI	GGCC	2 cut(s)	5, 460
BsoBI	CYCGRG	2 cut(s)	159, 323
Bsp1286I	GDGCHC	1 cut(s)	499
Bsp143I	GATC	1 cut(s)	97
Bsp1720I	GCTNAGC	1 cut(s)	234
BspACI	CCGC	8 cut(s)	252, 344, 363, 366, 550, 576, 579, 582
BspANI	GGCC	2 cut(s)	5, 460
BspCNI	CTCAG	1 cut(s)	226
BsrBI	CCGCTC	1 cut(s)	344
BsrDI	GCAATG	1 cut(s)	600
BsrI	ACTGG	2 cut(s)	262, 268
BssMI	GATC	1 cut(s)	97
BssNI	GRCGYC	1 cut(s)	50
Bst4CI	ACNGT	2 cut(s)	90, 388
Bst6I	CTCTTC	2 cut(s)	115, 548
BstACI	GRCGYC	1 cut(s)	50
BstAPI	GCANNNNNTGC	1 cut(s)	590
BstC8I	GCNNGC	2 cut(s)	570, 657
BstDEI	CTNAG	1 cut(s)	234
BstHHI	GCGC	2 cut(s)	155, 520
BstKTI	GATC	1 cut(s)	100
BstMBI	GATC	1 cut(s)	97
BstMWI	GCNNNNNNNGC	9 cut(s)	452, 494, 526, 565, 578, 584, 587, 590, 611
BstSCI	CCNGG	1 cut(s)	634
BstV1I	GCAGC	9 cut(s)	167, 532, 535, 538, 571, 577, 596, 599, 623
BstV2I	GAAGAC	1 cut(s)	705
BsuRI	GGCC	2 cut(s)	5, 460
BtsI	GCAGTG	2 cut(s)	27, 288
BtsIMutI	CAGTG	4 cut(s)	27, 255, 288, 393
Cac8I	GCNNGC	2 cut(s)	570, 657
CaiI	CAGNNNCTG	1 cut(s)	590
CfoI	GCGC	2 cut(s)	155, 520
Cfr13I	GGNCC	1 cut(s)	62
DdeI	CTNAG	1 cut(s)	234
DpnI	GATC	1 cut(s)	99
DpnII	GATC	1 cut(s)	97
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	2 cut(s)	115, 548
EarI	CTCTTC	2 cut(s)	115, 548
EciI	GGCGGA	3 cut(s)	381, 539, 565
Ecl136II	GAGCTC	1 cut(s)	497
Eco24I	GRGCYC	1 cut(s)	499
Eco47I	GGWCC	1 cut(s)	62
Eco53kI	GAGCTC	1 cut(s)	497
Eco57I	CTGAAG	1 cut(s)	591
Eco88I	CYCGRG	2 cut(s)	159, 323
EcoICRI	GAGCTC	1 cut(s)	497
EcoO109I	RGGNCCY	1 cut(s)	62
EcoT38I	GRGCYC	1 cut(s)	499
FaiI	YATR	4 cut(s)	38, 140, 212, 248
FalI	AAGNNNNNCTT	2 cut(s)	51, 83
FaqI	GGGAC	2 cut(s)	405, 418
FriOI	GRGCYC	1 cut(s)	499
FspBI	CTAG	1 cut(s)	615
FspI	TGCGCA	2 cut(s)	154, 519
GlaI	GCGC	2 cut(s)	154, 519
GsuI	CTGGAG	1 cut(s)	499
HaeIII	GGCC	2 cut(s)	5, 460
HapII	CCGG	7 cut(s)	275, 360, 452, 461, 492, 503, 635
HhaI	GCGC	2 cut(s)	155, 520
Hin1I	GRCGYC	1 cut(s)	50
Hin6I	GCGC	2 cut(s)	153, 518
HinP1I	GCGC	2 cut(s)	153, 518
HincII	GTYRAC	2 cut(s)	115, 384
HindII	GTYRAC	2 cut(s)	115, 384
HindIII	AAGCTT	1 cut(s)	570
HinfI	GANTC	2 cut(s)	133, 356
HpaI	GTTAAC	1 cut(s)	384
HpaII	CCGG	7 cut(s)	275, 360, 452, 461, 492, 503, 635
HphI	GGTGA	1 cut(s)	611
Hpy166II	GTNNAC	3 cut(s)	115, 318, 384
Hpy188I	TCNGA	4 cut(s)	199, 341, 470, 693
Hpy188III	TCNNGA	2 cut(s)	325, 478
Hpy8I	GTNNAC	3 cut(s)	115, 318, 384
Hpy99I	CGWCG	1 cut(s)	17
HpyAV	CCTTC	3 cut(s)	123, 249, 344
HpyCH4III	ACNGT	2 cut(s)	90, 388
HpyCH4IV	ACGT	3 cut(s)	50, 331, 715
HpyCH4V	TGCA	2 cut(s)	488, 593
HpyF10VI	GCNNNNNNNGC	9 cut(s)	452, 494, 526, 565, 578, 584, 587, 590, 611
HpyF3I	CTNAG	1 cut(s)	234
HpySE526I	ACGT	3 cut(s)	50, 331, 715
Hsp92I	GRCGYC	1 cut(s)	50
HspAI	GCGC	2 cut(s)	153, 518
KspAI	GTTAAC	1 cut(s)	384
Kzo9I	GATC	1 cut(s)	97
LmnI	GCTCC	5 cut(s)	17, 480, 494, 502, 674
Lsp1109I	GCAGC	9 cut(s)	167, 532, 535, 538, 571, 577, 596, 599, 623
LweI	GCATC	1 cut(s)	42
MaeI	CTAG	1 cut(s)	615
MaeII	ACGT	3 cut(s)	50, 331, 715
MaeIII	GTNAC	2 cut(s)	26, 188
MalI	GATC	1 cut(s)	99
MbiI	CCGCTC	1 cut(s)	344
MboI	GATC	1 cut(s)	97
MboII	GAAGA	6 cut(s)	132, 138, 300, 535, 623, 710
MfeI	CAATTG	1 cut(s)	170
MhlI	GDGCHC	1 cut(s)	499
MluCI	AATT	3 cut(s)	170, 625, 649
MmeI	TCCRAC	1 cut(s)	671
MseI	TTAA	4 cut(s)	69, 78, 383, 413
MspA1I	CMGCKG	1 cut(s)	590
MspI	CCGG	7 cut(s)	275, 360, 452, 461, 492, 503, 635
MspR9I	CCNGG	1 cut(s)	636
MunI	CAATTG	1 cut(s)	170
MwoI	GCNNNNNNNGC	9 cut(s)	452, 494, 526, 565, 578, 584, 587, 590, 611
NciI	CCSGG	1 cut(s)	636
NdeII	GATC	1 cut(s)	97
NmuCI	GTSAC	1 cut(s)	188
NsbI	TGCGCA	2 cut(s)	154, 519
PaeR7I	CTCGAG	1 cut(s)	159
PfeI	GAWTC	2 cut(s)	133, 356
PflMI	CCANNNNNTGG	1 cut(s)	216
PpuMI	RGGWCCY	1 cut(s)	62
Psp124BI	GAGCTC	1 cut(s)	499
Psp5II	RGGWCCY	1 cut(s)	62
PspPI	GGNCC	1 cut(s)	62
PspPPI	RGGWCCY	1 cut(s)	62
PspXI	VCTCGAGB	1 cut(s)	159
PsrI	GAACNNNNNNTAC	2 cut(s)	253, 285
PstNI	CAGNNNCTG	1 cut(s)	590
PvuII	CAGCTG	1 cut(s)	590
SacI	GAGCTC	1 cut(s)	499
SaqAI	TTAA	4 cut(s)	69, 78, 383, 413
Sau3AI	GATC	1 cut(s)	97
Sau96I	GGNCC	1 cut(s)	62
ScrFI	CCNGG	1 cut(s)	636
SduI	GDGCHC	1 cut(s)	499
SfaNI	GCATC	1 cut(s)	42
Sfr274I	CTCGAG	1 cut(s)	159
SinI	GGWCC	1 cut(s)	62
SlaI	CTCGAG	1 cut(s)	159
SmlI	CTYRAG	1 cut(s)	159
SmoI	CTYRAG	1 cut(s)	159
Sse9I	AATT	3 cut(s)	170, 625, 649
SsiI	CCGC	8 cut(s)	252, 344, 363, 366, 550, 576, 579, 582
SspMI	CTAG	1 cut(s)	615
SstI	GAGCTC	1 cut(s)	499
StyD4I	CCNGG	1 cut(s)	634
TaaI	ACNGT	2 cut(s)	90, 388
TaiI	ACGT	3 cut(s)	53, 334, 718
TaqI	TCGA	3 cut(s)	42, 100, 160
TasI	AATT	3 cut(s)	170, 625, 649
TauI	GCSGC	4 cut(s)	254, 366, 581, 584
TfiI	GAWTC	2 cut(s)	133, 356
Tru1I	TTAA	4 cut(s)	69, 78, 383, 413
Tru9I	TTAA	4 cut(s)	69, 78, 383, 413
TscAI	CASTG	4 cut(s)	27, 262, 295, 393
TseFI	GTSAC	1 cut(s)	188
TseI	GCWGC	9 cut(s)	155, 520, 523, 526, 559, 584, 587, 590, 611
Tsp45I	GTSAC	1 cut(s)	188
TspGWI	ACGGA	4 cut(s)	30, 132, 215, 303
TspRI	CASTG	4 cut(s)	27, 262, 295, 393
Van91I	CCANNNNNTGG	1 cut(s)	216
VpaK11BI	GGWCC	1 cut(s)	62
XhoI	CTCGAG	1 cut(s)	159
XspI	CTAG	1 cut(s)	615
ZraI	GACGTC	1 cut(s)	51

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.