RLG00000009336
TCP Family

Transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0007792
Physical Location & Seq
Forward (+)
51220491 .. 51222488
1998 bp
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UTR
Exon/CDS
Intron
RLM00000009336

Sequence Viewer

Length: 855 bp
ATGTCTAATTCCGAGGCCCCGAATAACGAGCTCTCCAATGGAGCAGCAGCTATGTTGATGGAAAGACAGCAGCAGCAGCAACAGCAACAGCAACAGACCCAGCAACAGACGGCGGCGGCATCTAACGGCGTCTTGGCCGTCAAGAAGCCGCCGTCGAAGGACCGACACAGCAAGGTCGACGGCCGGGGCCGACGCATCCGCATGCCCATCATCTGCGCCGCACGTGTCTTCCAGCTCACACGTGAGCTCGGCCACAAGTCCGACGGCCAGACCATCGAGTGGCTCCTCCGCCAGGCCGAGCCCTCCATCATCGCCGCCACCGGCACCGGCACCACTCCCGCTAGCTTCTCCACCGTCTCCGTCTCCCTCCGCGGCGGAGCCTCCTCCGGCGCAGCCTCCCTCTCCAACTCCTCCACTACTTCCTCCAACGACCACAAGCCCCTCCTCGGCGGCCCCACCCCCTTCATCCTCGGCAAGCGCATGCGCACCGACGACGACGCCAAGGACGCCGACGGCCACCACGGCGCCGCCGACGGAGCAGGACCAGGAGCAGTCTCGGTCGTCGGTCACCACTCCATGAGCTCCATGCTTGGCTCCGCCGCCGCCGCCGCCCAGGGAGGGTTCTGGGCGCCGCACTACGGACAAGTCTGGAGCTTCGCTGCCACGCCGCCGCCGGAAATGATGACTCAGCAGCAGTCGGTCTCCCAACAGCATTCTTTGTTCTTGCCGCAGCAGCCGATGGGGGAAGCTTCGGCGGCCAGAGTGGGAAATTACCTTCCGGGCCATCTCAATTTGTTGGCCTCTTTGTCCGGCGGGCACGGCAATTCGGGTCGGAGAGAAGACGACCCGCGTTAA

Protein Analysis

285

Amino Acids

29.76

Weight (kDa)

9.2

Isoelectric Point (pI)

44.75

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TCP PF03634 52 - 135 3.6e-29 TCP family transcription factor
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 485
AccB1I GGYRCC 4 cut(s) 323, 329, 524, 628
AccB7I CCANNNNNTGG 1 cut(s) 279
AccI GTMKAC 1 cut(s) 177
AccII CGCG 2 cut(s) 372, 850
AcoI YGGCCR 6 cut(s) 135, 181, 250, 265, 514, 756
AcvI CACGTG 2 cut(s) 224, 242
AcyI GRCGYC 5 cut(s) 129, 498, 507, 525, 629
AfiI CCNNNNNNNGG 5 cut(s) 279, 292, 446, 618, 638
AflIII ACRYGT 2 cut(s) 223, 239
AjnI CCWGG 3 cut(s) 291, 544, 612
AluBI AGCT 8 cut(s) 31, 50, 235, 247, 345, 582, 654, 749
AluI AGCT 8 cut(s) 31, 50, 235, 247, 345, 582, 654, 749
Alw21I GWGCWC 3 cut(s) 33, 249, 584
Alw26I GTCTC 4 cut(s) 361, 367, 559, 706
AspLEI GCGC 6 cut(s) 218, 392, 480, 486, 527, 631
AspS9I GGNCC 6 cut(s) 16, 160, 187, 452, 542, 781
AsuC2I CCSGG 2 cut(s) 185, 780
AsuHPI GGTGA 1 cut(s) 560
AsuNHI GCTAGC 1 cut(s) 341
AvaII GGWCC 2 cut(s) 160, 542
BaeGI GKGCMC 1 cut(s) 819
BanI GGYRCC 4 cut(s) 323, 329, 524, 628
BanII GRGCYC 4 cut(s) 33, 249, 303, 584
BbrPI CACGTG 2 cut(s) 224, 242
BbsI GAAGAC 2 cut(s) 220, 846
Bbv12I GWGCWC 3 cut(s) 33, 249, 584
BccI CCATC 6 cut(s) 52, 215, 281, 314, 733, 792
BceAI ACGGC 9 cut(s) 122, 126, 136, 142, 196, 280, 529, 538, 835
BciT130I CCWGG 3 cut(s) 293, 546, 614
BcnI CCSGG 2 cut(s) 185, 780
BcoDI GTCTC 4 cut(s) 361, 367, 559, 706
BfaI CTAG 1 cut(s) 342
BfoI RGCGCY 2 cut(s) 528, 632
BglI GCCNNNNNGGC 1 cut(s) 522
Bme1390I CCNGG 5 cut(s) 185, 293, 546, 614, 780
Bme18I GGWCC 2 cut(s) 160, 542
BmgT120I GGNCC 6 cut(s) 16, 160, 187, 452, 542, 781
BmrFI CCNGG 5 cut(s) 185, 293, 546, 614, 780
BmsI GCATC 2 cut(s) 128, 204
BmtI GCTAGC 1 cut(s) 345
BpiI GAAGAC 2 cut(s) 220, 846
BpmI CTGGAG 1 cut(s) 670
BpuMI CCSGG 2 cut(s) 185, 780
BsaAI YACGTR 2 cut(s) 224, 242
BsaHI GRCGYC 5 cut(s) 129, 498, 507, 525, 629
BsaI GGTCTC 1 cut(s) 706
BsaJI CCNNGG 9 cut(s) 12, 184, 370, 445, 469, 501, 520, 612, 613
BsaXI ACNNNNNCTCC 2 cut(s) 17, 47
Bsc4I CCNNNNNNNGG 5 cut(s) 279, 292, 446, 618, 638
Bse118I RCCGGY 2 cut(s) 320, 326
BseBI CCWGG 3 cut(s) 293, 546, 614
BseDI CCNNGG 9 cut(s) 12, 184, 370, 445, 469, 501, 520, 612, 613
BseGI GGATG 2 cut(s) 195, 465
BseLI CCNNNNNNNGG 5 cut(s) 279, 292, 446, 618, 638
BseMII CTCAG 1 cut(s) 701
BseRI GAGGAG 4 cut(s) 275, 373, 400, 434
BseSI GKGCMC 1 cut(s) 819
BseX3I CGGCCG 1 cut(s) 181
BseYI CCCAGC 1 cut(s) 99
Bsh1236I CGCG 2 cut(s) 372, 850
Bsh1285I CGRYCG 2 cut(s) 184, 561
BshNI GGYRCC 4 cut(s) 323, 329, 524, 628
BsiEI CGRYCG 2 cut(s) 184, 561
BsiHKAI GWGCWC 3 cut(s) 33, 249, 584
BsiSI CCGG 7 cut(s) 184, 321, 327, 387, 674, 779, 810
BslI CCNNNNNNNGG 5 cut(s) 279, 292, 446, 618, 638
BsmAI GTCTC 4 cut(s) 361, 367, 559, 706
BsmBI CGTCTC 2 cut(s) 361, 367
BsmI GAATGC 1 cut(s) 712
Bso31I GGTCTC 1 cut(s) 706
Bsp1286I GDGCHC 5 cut(s) 33, 249, 303, 584, 819
BspCNI CTCAG 1 cut(s) 700
BspFNI CGCG 2 cut(s) 372, 850
BspOI GCTAGC 1 cut(s) 345
BspT107I GGYRCC 4 cut(s) 323, 329, 524, 628
BspTNI GGTCTC 1 cut(s) 706
BsrFI RCCGGY 2 cut(s) 320, 326
BssAI RCCGGY 2 cut(s) 320, 326
BssECI CCNNGG 9 cut(s) 12, 184, 370, 445, 469, 501, 520, 612, 613
BssNI GRCGYC 5 cut(s) 129, 498, 507, 525, 629
BssT1I CCWWGG 1 cut(s) 501
Bst2UI CCWGG 3 cut(s) 293, 546, 614
Bst4CI ACNGT 1 cut(s) 355
BstACI GRCGYC 5 cut(s) 129, 498, 507, 525, 629
BstBAI YACGTR 2 cut(s) 224, 242
BstC8I GCNNGC 5 cut(s) 203, 343, 476, 482, 815
BstDEI CTNAG 1 cut(s) 687
BstDSI CCRYGG 2 cut(s) 370, 520
BstEII GGTNACC 1 cut(s) 566
BstENI CCTNNNNNAGG 1 cut(s) 290
BstF5I GGATG 2 cut(s) 195, 465
BstFNI CGCG 2 cut(s) 372, 850
BstH2I RGCGCY 2 cut(s) 528, 632
BstHHI GCGC 6 cut(s) 218, 392, 480, 486, 527, 631
BstMAI GTCTC 4 cut(s) 361, 367, 559, 706
BstMCI CGRYCG 2 cut(s) 184, 561
BstNI CCWGG 3 cut(s) 293, 546, 614
BstNSI RCATGY 2 cut(s) 205, 484
BstPI GGTNACC 1 cut(s) 566
BstSCI CCNGG 5 cut(s) 183, 291, 544, 612, 778
BstSLI GKGCMC 1 cut(s) 819
BstUI CGCG 2 cut(s) 372, 850
BstV2I GAAGAC 2 cut(s) 220, 846
BstZI CGGCCG 1 cut(s) 181
BtgI CCRYGG 2 cut(s) 370, 520
BtgZI GCGATG 1 cut(s) 295
BtsCI GGATG 2 cut(s) 195, 465
Cac8I GCNNGC 5 cut(s) 203, 343, 476, 482, 815
CfoI GCGC 6 cut(s) 218, 392, 480, 486, 527, 631
Cfr10I RCCGGY 2 cut(s) 320, 326
Cfr13I GGNCC 6 cut(s) 16, 160, 187, 452, 542, 781
Cfr42I CCGCGG 1 cut(s) 373
CseI GACGC 4 cut(s) 118, 201, 506, 515
CviAII CATG 4 cut(s) 202, 481, 577, 586
DdeI CTNAG 1 cut(s) 687
DinI GGCGCC 2 cut(s) 526, 630
EaeI YGGCCR 6 cut(s) 135, 181, 250, 265, 514, 756
EagI CGGCCG 1 cut(s) 181
EciI GGCGGA 3 cut(s) 278, 390, 586
Ecl136II GAGCTC 3 cut(s) 31, 247, 582
EclXI CGGCCG 1 cut(s) 181
Eco130I CCWWGG 1 cut(s) 501
Eco24I GRGCYC 4 cut(s) 33, 249, 303, 584
Eco31I GGTCTC 1 cut(s) 706
Eco47I GGWCC 2 cut(s) 160, 542
Eco52I CGGCCG 1 cut(s) 181
Eco53kI GAGCTC 3 cut(s) 31, 247, 582
Eco72I CACGTG 2 cut(s) 224, 242
Eco91I GGTNACC 1 cut(s) 566
EcoICRI GAGCTC 3 cut(s) 31, 247, 582
EcoNI CCTNNNNNAGG 1 cut(s) 290
EcoO109I RGGNCCY 1 cut(s) 16
EcoO65I GGTNACC 1 cut(s) 566
EcoRII CCWGG 3 cut(s) 291, 544, 612
EcoT14I CCWWGG 1 cut(s) 501
EcoT38I GRGCYC 4 cut(s) 33, 249, 303, 584
EgeI GGCGCC 2 cut(s) 526, 630
EheI GGCGCC 2 cut(s) 526, 630
ErhI CCWWGG 1 cut(s) 501
Esp3I CGTCTC 2 cut(s) 361, 367
FaeI CATG 4 cut(s) 205, 484, 580, 589
FaiI YATR 5 cut(s) 53, 203, 482, 578, 587
FatI CATG 4 cut(s) 201, 480, 576, 585
FauI CCCGC 2 cut(s) 346, 806
FblI GTMKAC 1 cut(s) 177
FokI GGATG 2 cut(s) 182, 452
FriOI GRGCYC 4 cut(s) 33, 249, 303, 584
FspAI RTGCGCAY 1 cut(s) 485
FspBI CTAG 1 cut(s) 342
FspI TGCGCA 1 cut(s) 485
GlaI GCGC 6 cut(s) 217, 391, 479, 485, 526, 630
GsaI CCCAGC 1 cut(s) 103
GsuI CTGGAG 1 cut(s) 670
HaeII RGCGCY 2 cut(s) 528, 632
HapII CCGG 7 cut(s) 184, 321, 327, 387, 674, 779, 810
HgaI GACGC 4 cut(s) 118, 201, 506, 515
HhaI GCGC 6 cut(s) 218, 392, 480, 486, 527, 631
Hin1I GRCGYC 5 cut(s) 129, 498, 507, 525, 629
Hin1II CATG 4 cut(s) 205, 484, 580, 589
Hin6I GCGC 6 cut(s) 216, 390, 478, 484, 525, 629
HinP1I GCGC 6 cut(s) 216, 390, 478, 484, 525, 629
HincII GTYRAC 1 cut(s) 178
HindII GTYRAC 1 cut(s) 178
HindIII AAGCTT 1 cut(s) 747
HinfI GANTC 1 cut(s) 685
HpaII CCGG 7 cut(s) 184, 321, 327, 387, 674, 779, 810
HphI GGTGA 1 cut(s) 560
Hpy166II GTNNAC 1 cut(s) 178
Hpy188I TCNGA 3 cut(s) 13, 262, 834
Hpy188III TCNNGA 2 cut(s) 142, 649
Hpy8I GTNNAC 1 cut(s) 178
HpyAV CCTTC 3 cut(s) 151, 472, 785
HpyCH4III ACNGT 1 cut(s) 355
HpyCH4IV ACGT 2 cut(s) 223, 241
HpyF3I CTNAG 1 cut(s) 687
HpySE526I ACGT 2 cut(s) 223, 241
Hsp92I GRCGYC 5 cut(s) 129, 498, 507, 525, 629
Hsp92II CATG 4 cut(s) 205, 484, 580, 589
HspAI GCGC 6 cut(s) 216, 390, 478, 484, 525, 629
KasI GGCGCC 2 cut(s) 524, 628
KspI CCGCGG 1 cut(s) 373
LmnI GCTCC 8 cut(s) 41, 288, 377, 536, 548, 587, 599, 651
LweI GCATC 2 cut(s) 128, 204
MaeI CTAG 1 cut(s) 342
MaeII ACGT 2 cut(s) 223, 241
MaeIII GTNAC 1 cut(s) 566
MboII GAAGA 2 cut(s) 220, 851
MhlI GDGCHC 5 cut(s) 33, 249, 303, 584, 819
MluCI AATT 4 cut(s) 7, 769, 790, 823
Mly113I GGCGCC 2 cut(s) 525, 629
MlyI GAGTC 1 cut(s) 679
MmeI TCCRAC 4 cut(s) 285, 429, 450, 812
MseI TTAA 1 cut(s) 853
MslI CAYNNNNRTG 1 cut(s) 200
MspA1I CMGCKG 1 cut(s) 372
MspI CCGG 7 cut(s) 184, 321, 327, 387, 674, 779, 810
MspR9I CCNGG 5 cut(s) 185, 293, 546, 614, 780
Mva1269I GAATGC 1 cut(s) 712
MvaI CCWGG 3 cut(s) 293, 546, 614
MvnI CGCG 2 cut(s) 372, 850
NarI GGCGCC 2 cut(s) 525, 629
NciI CCSGG 2 cut(s) 185, 780
NheI GCTAGC 1 cut(s) 341
NlaIII CATG 4 cut(s) 205, 484, 580, 589
NmeAIII GCCGAG 4 cut(s) 228, 322, 426, 450
NmuCI GTSAC 1 cut(s) 566
NsbI TGCGCA 1 cut(s) 485
NspI RCATGY 2 cut(s) 205, 484
PaeI GCATGC 2 cut(s) 205, 484
PasI CCCWGGG 1 cut(s) 613
PcsI WCGNNNNNNNCGW 1 cut(s) 528
PctI GAATGC 1 cut(s) 712
PflMI CCANNNNNTGG 1 cut(s) 279
PleI GAGTC 1 cut(s) 679
PluTI GGCGCC 2 cut(s) 528, 632
PmaCI CACGTG 2 cut(s) 224, 242
PmlI CACGTG 2 cut(s) 224, 242
PpsI GAGTC 1 cut(s) 679
Ppu21I YACGTR 2 cut(s) 224, 242
Psp124BI GAGCTC 3 cut(s) 33, 249, 584
Psp6I CCWGG 3 cut(s) 291, 544, 612
PspCI CACGTG 2 cut(s) 224, 242
PspEI GGTNACC 1 cut(s) 566
PspFI CCCAGC 1 cut(s) 99
PspGI CCWGG 3 cut(s) 291, 544, 612
PspPI GGNCC 6 cut(s) 16, 160, 187, 452, 542, 781
RseI CAYNNNNRTG 1 cut(s) 200
SacI GAGCTC 3 cut(s) 33, 249, 584
SacII CCGCGG 1 cut(s) 373
SalI GTCGAC 1 cut(s) 176
SaqAI TTAA 1 cut(s) 853
Sau96I GGNCC 6 cut(s) 16, 160, 187, 452, 542, 781
SchI GAGTC 1 cut(s) 679
ScrFI CCNGG 5 cut(s) 185, 293, 546, 614, 780
SduI GDGCHC 5 cut(s) 33, 249, 303, 584, 819
SfaNI GCATC 2 cut(s) 128, 204
SfoI GGCGCC 2 cut(s) 526, 630
Sfr303I CCGCGG 1 cut(s) 373
SgrBI CCGCGG 1 cut(s) 373
SinI GGWCC 2 cut(s) 160, 542
SmiMI CAYNNNNRTG 1 cut(s) 200
SphI GCATGC 2 cut(s) 205, 484
Sse9I AATT 4 cut(s) 7, 769, 790, 823
SspDI GGCGCC 2 cut(s) 524, 628
SspMI CTAG 1 cut(s) 342
SstI GAGCTC 3 cut(s) 33, 249, 584
StyD4I CCNGG 5 cut(s) 183, 291, 544, 612, 778
StyI CCWWGG 1 cut(s) 501
TaaI ACNGT 1 cut(s) 355
TaiI ACGT 2 cut(s) 226, 244
TaqI TCGA 3 cut(s) 155, 177, 276
TaqII GACCGA 4 cut(s) 177, 547, 554, 688
TasI AATT 4 cut(s) 7, 769, 790, 823
Tru1I TTAA 1 cut(s) 853
Tru9I TTAA 1 cut(s) 853
TseFI GTSAC 1 cut(s) 566
Tsp45I GTSAC 1 cut(s) 566
TspDTI ATGAA 1 cut(s) 454
TspGWI ACGGA 3 cut(s) 349, 549, 654
Van91I CCANNNNNTGG 1 cut(s) 279
VpaK11BI GGWCC 2 cut(s) 160, 542
XagI CCTNNNNNAGG 1 cut(s) 290
XceI RCATGY 2 cut(s) 205, 484
XmiI GTMKAC 1 cut(s) 177
XspI CTAG 1 cut(s) 342
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.