Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8332803.1

Orthogroup ID

OG0007792

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 234

Gene Structure 234 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8332803.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 234 bp

ttctgggcgccgcactacggacaagtctggagcttcgccaccacgccgccgccggaaatgatgagtcagcagcagtcggtctcccaacagcattctttgttcttgccgcagcagccgatgggggaagcctcggcggcaagagtgggaaattaccttccgggacatctcaatttgttggcttctttgtcgggcgggcacggcaattcgggtcggagagaagacgacccgcgttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0042752 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043433 GO:0044092 GO:0044424 GO:0044464 GO:0048519 GO:0050789 GO:0050794 GO:0051090 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0065009 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04712 map04712

Pfam Domains

Protein Families

TCP

Protein Analysis

77

Amino Acids

8.45

Weight (kDa)

6.43

Isoelectric Point (pI)

61.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007792)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G35560 AT1G72010 AT3G45150 AT3G47620 AT5G08330 AT5G23280 AT5G41030
fragaria_vesca	FvH4_4g06720
malus_domestica	MD13G1238400.v1.1 MD16G1243300.v1.1
prunus_persica	Prupe.1G070500_v2.0.a1 Prupe.1G070500_v2.0.a1 Prupe.1G070500_v2.0.a1
pyrus_communis	pycom13g21080 pycom16g20410
rosa_chinensis	RchiOBHm_Chr4g0398661
rosa_laevigata	RLG00000009336
rosa_multiflora	Rmu_co8332803.1_g000001
rosa_rugosa	Rorug04G0010200
rosa_samantha	Rh4AG088200 Rh4BG084800 Rh4CG096400 Rh4DG079600
rosa_wichuraiana	Rw4G007310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	7
AccII	CGCG	1 cut(s)	229
AciI	CCGC	7 cut(s)	11, 47, 50, 107, 134, 192, 227
AcyI	GRCGYC	1 cut(s)	8
AfiI	CCNNNNNNNGG	1 cut(s)	17
AluBI	AGCT	1 cut(s)	33
AluI	AGCT	1 cut(s)	33
Alw26I	GTCTC	1 cut(s)	85
ApeKI	GCWGC	3 cut(s)	70, 109, 112
AspLEI	GCGC	1 cut(s)	10
AsuC2I	CCSGG	1 cut(s)	159
BaeGI	GKGCMC	1 cut(s)	198
BanI	GGYRCC	1 cut(s)	7
BbsI	GAAGAC	1 cut(s)	225
BbvI	GCAGC	3 cut(s)	82, 121, 124
BccI	CCATC	1 cut(s)	112
BceAI	ACGGC	1 cut(s)	214
BcnI	CCSGG	1 cut(s)	159
BcoDI	GTCTC	1 cut(s)	85
BfoI	RGCGCY	1 cut(s)	11
BglI	GCCNNNNNGGC	1 cut(s)	134
BisI	GCNGC	8 cut(s)	11, 47, 50, 71, 107, 110, 113, 135
BlsI	GCNGC	8 cut(s)	12, 48, 51, 72, 108, 111, 114, 136
Bme1390I	CCNGG	1 cut(s)	159
BmiI	GGNNCC	1 cut(s)	9
BmrFI	CCNGG	1 cut(s)	159
BpiI	GAAGAC	1 cut(s)	225
BpmI	CTGGAG	1 cut(s)	49
BpuMI	CCSGG	1 cut(s)	159
BsaHI	GRCGYC	1 cut(s)	8
BsaI	GGTCTC	1 cut(s)	85
BsaJI	CCNNGG	1 cut(s)	129
Bsc4I	CCNNNNNNNGG	1 cut(s)	17
BseDI	CCNNGG	1 cut(s)	129
BseLI	CCNNNNNNNGG	1 cut(s)	17
BseSI	GKGCMC	1 cut(s)	198
BseXI	GCAGC	3 cut(s)	82, 121, 124
Bsh1236I	CGCG	1 cut(s)	229
BshNI	GGYRCC	1 cut(s)	7
BsiSI	CCGG	2 cut(s)	53, 158
BslFI	GGGAC	1 cut(s)	174
BslI	CCNNNNNNNGG	1 cut(s)	17
BsmAI	GTCTC	1 cut(s)	85
BsmFI	GGGAC	1 cut(s)	174
BsmI	GAATGC	1 cut(s)	91
Bso31I	GGTCTC	1 cut(s)	85
Bsp1286I	GDGCHC	1 cut(s)	198
BspACI	CCGC	7 cut(s)	11, 47, 50, 107, 134, 192, 227
BspFNI	CGCG	1 cut(s)	229
BspLI	GGNNCC	1 cut(s)	9
BspT107I	GGYRCC	1 cut(s)	7
BspTNI	GGTCTC	1 cut(s)	85
BssECI	CCNNGG	1 cut(s)	129
BssNI	GRCGYC	1 cut(s)	8
BstACI	GRCGYC	1 cut(s)	8
BstC8I	GCNNGC	1 cut(s)	194
BstFNI	CGCG	1 cut(s)	229
BstH2I	RGCGCY	1 cut(s)	11
BstHHI	GCGC	1 cut(s)	10
BstMAI	GTCTC	1 cut(s)	85
BstMWI	GCNNNNNNNGC	3 cut(s)	112, 134, 198
BstSCI	CCNGG	1 cut(s)	157
BstSLI	GKGCMC	1 cut(s)	198
BstUI	CGCG	1 cut(s)	229
BstV1I	GCAGC	3 cut(s)	82, 121, 124
BstV2I	GAAGAC	1 cut(s)	225
Cac8I	GCNNGC	1 cut(s)	194
CfoI	GCGC	1 cut(s)	10
CviJI	RGCY	4 cut(s)	33, 115, 128, 179
CviKI_1	RGCY	4 cut(s)	33, 115, 128, 179
DinI	GGCGCC	1 cut(s)	9
Eco31I	GGTCTC	1 cut(s)	85
EgeI	GGCGCC	1 cut(s)	9
EheI	GGCGCC	1 cut(s)	9
FaqI	GGGAC	1 cut(s)	174
FauI	CCCGC	1 cut(s)	185
Fnu4HI	GCNGC	8 cut(s)	11, 47, 50, 71, 107, 110, 113, 135
Fsp4HI	GCNGC	8 cut(s)	11, 47, 50, 71, 107, 110, 113, 135
GlaI	GCGC	1 cut(s)	9
GluI	GCNGC	8 cut(s)	11, 47, 50, 71, 107, 110, 113, 135
GsuI	CTGGAG	1 cut(s)	49
HaeII	RGCGCY	1 cut(s)	11
HapII	CCGG	2 cut(s)	53, 158
HhaI	GCGC	1 cut(s)	10
Hin1I	GRCGYC	1 cut(s)	8
Hin6I	GCGC	1 cut(s)	8
HinP1I	GCGC	1 cut(s)	8
HinfI	GANTC	1 cut(s)	64
HpaII	CCGG	2 cut(s)	53, 158
Hpy188I	TCNGA	1 cut(s)	213
Hpy188III	TCNNGA	1 cut(s)	28
HpyAV	CCTTC	1 cut(s)	164
HpyF10VI	GCNNNNNNNGC	3 cut(s)	112, 134, 198
Hsp92I	GRCGYC	1 cut(s)	8
HspAI	GCGC	1 cut(s)	8
KasI	GGCGCC	1 cut(s)	7
LmnI	GCTCC	1 cut(s)	30
LpnPI	CCDG	3 cut(s)	13, 66, 171
Lsp1109I	GCAGC	3 cut(s)	82, 121, 124
MboII	GAAGA	1 cut(s)	230
MhlI	GDGCHC	1 cut(s)	198
MluCI	AATT	3 cut(s)	148, 169, 202
Mly113I	GGCGCC	1 cut(s)	8
MlyI	GAGTC	1 cut(s)	73
MmeI	TCCRAC	1 cut(s)	191
MnlI	CCTC	1 cut(s)	139
MseI	TTAA	1 cut(s)	232
MspI	CCGG	2 cut(s)	53, 158
MspR9I	CCNGG	1 cut(s)	159
Mva1269I	GAATGC	1 cut(s)	91
MvnI	CGCG	1 cut(s)	229
MwoI	GCNNNNNNNGC	3 cut(s)	112, 134, 198
NarI	GGCGCC	1 cut(s)	8
NciI	CCSGG	1 cut(s)	159
NlaIV	GGNNCC	1 cut(s)	9
NmeAIII	GCCGAG	1 cut(s)	110
PctI	GAATGC	1 cut(s)	91
PfoI	TCCNGGA	1 cut(s)	157
PkrI	GCNGC	8 cut(s)	12, 48, 51, 72, 108, 111, 114, 136
PleI	GAGTC	1 cut(s)	72
PluTI	GGCGCC	1 cut(s)	11
PpsI	GAGTC	1 cut(s)	72
PspN4I	GGNNCC	1 cut(s)	9
SaqAI	TTAA	1 cut(s)	232
SatI	GCNGC	8 cut(s)	11, 47, 50, 71, 107, 110, 113, 135
SchI	GAGTC	1 cut(s)	73
ScrFI	CCNGG	1 cut(s)	159
SduI	GDGCHC	1 cut(s)	198
SetI	ASST	2 cut(s)	35, 156
SfoI	GGCGCC	1 cut(s)	9
Sse9I	AATT	3 cut(s)	148, 169, 202
SsiI	CCGC	7 cut(s)	11, 47, 50, 107, 134, 192, 227
SspDI	GGCGCC	1 cut(s)	7
StyD4I	CCNGG	1 cut(s)	157
TaqII	GACCGA	1 cut(s)	67
TasI	AATT	3 cut(s)	148, 169, 202
TauI	GCSGC	5 cut(s)	13, 49, 52, 109, 137
Tru1I	TTAA	1 cut(s)	232
Tru9I	TTAA	1 cut(s)	232
TseI	GCWGC	3 cut(s)	70, 109, 112
TspGWI	ACGGA	1 cut(s)	33

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.