RchiOBHm_Chr4g0398661
TCP Family

Transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0007792
Physical Location & Seq
Reverse (-)
15222336 .. 15224302
1967 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ37082

Sequence Viewer

Length: 831 bp
ATGTCTAATTCCGAGGCCCCGAATAACGAGCTCTCCAATGGAGCAGCAGCTATGATGATGGAAAGACAGCAGCAGCAGCAACCGACCCAGCAACAGACGGCGGCATCTAACGGCGTCTTGGCCGTCAAGAAGCCGCCGTCAAAGGACCGACACAGCAAGGTCGACGGCCGGGGCCGACGCATCCGCATGCCCATCATCTGCGCCGCACGTGTCTTCCAGCTCACACGTGAGCTCGGCCACAAGTCCGATGGCCAGACCATCGAGTGGCTCCTCCGCCAGGCCGAGCCCTCCATCATCGCCGCCACCGGCACCGGCACCACTCCCGCTAGCTTCTCCACCGTCTCCGTCTCCCTCCGCGGCGGAGCCTCCTCCGGCGCCGCCTCCCTCTCCAACTCCTCCACTACTTCCTCCAACGACCACAAGCCCCTCCTCGGCGGCCCCACCCCCTTCATCCTCGGCAAGCGCATGCGCGCCGACGACGACGCCAAGGACGCCGACGCCCACCACGGCGCCACCGACGGAGCAGGACCAGGAGCAGTCTCGGTCGTCGGTCACCACTCCATGAGCTCCATGCTGGGCTCCGCCGCCCAGGGAGGGTTCTGGGCGCCTCACTACGGACAAGTCTGGAGCTTCGCCACCACGCCTCCGCCGGAAATGATGACTCAGCAGCAGTCGGTCTCCCAACAGCATTCTTTGTTCTTGCCGCAGCAGCCGATGGGGGAAGCCTCGGCGGCAAGAGTGGGAAATTACCTTCCGGGACATCTCAATTTGTTGGCTTCTTTGTCGGGCGGGCACGGCAATTCGGGTCGGAGAGAAGACGACCAGCGTTAA

Protein Analysis

276

Amino Acids

29.03

Weight (kDa)

9.2

Isoelectric Point (pI)

42.72

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TCP PF03634 47 - 131 3.2e-29 TCP family transcription factor
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 5 cut(s) 308, 314, 374, 509, 604
AccB7I CCANNNNNTGG 1 cut(s) 264
AccI GTMKAC 1 cut(s) 162
AccII CGCG 2 cut(s) 357, 471
AcoI YGGCCR 4 cut(s) 120, 166, 235, 250
AcvI CACGTG 2 cut(s) 209, 227
AcyI GRCGYC 7 cut(s) 114, 375, 483, 492, 498, 510, 605
AfiI CCNNNNNNNGG 5 cut(s) 264, 277, 431, 594, 614
AflIII ACRYGT 2 cut(s) 208, 224
AjnI CCWGG 3 cut(s) 276, 529, 588
AluBI AGCT 7 cut(s) 31, 50, 220, 232, 330, 567, 630
AluI AGCT 7 cut(s) 31, 50, 220, 232, 330, 567, 630
Alw21I GWGCWC 3 cut(s) 33, 234, 569
Alw26I GTCTC 4 cut(s) 346, 352, 544, 682
AoxI GGCC 8 cut(s) 15, 120, 166, 172, 235, 250, 279, 436
ApeKI GCWGC 8 cut(s) 44, 47, 70, 73, 76, 667, 706, 709
AspLEI GCGC 7 cut(s) 203, 377, 465, 471, 473, 512, 607
AspS9I GGNCC 5 cut(s) 16, 145, 172, 437, 527
AsuC2I CCSGG 2 cut(s) 170, 756
AsuHPI GGTGA 1 cut(s) 545
AsuNHI GCTAGC 1 cut(s) 326
AvaII GGWCC 2 cut(s) 145, 527
BaeGI GKGCMC 1 cut(s) 795
BalI TGGCCA 1 cut(s) 252
BanI GGYRCC 5 cut(s) 308, 314, 374, 509, 604
BanII GRGCYC 5 cut(s) 33, 234, 288, 569, 581
BbrPI CACGTG 2 cut(s) 209, 227
BbsI GAAGAC 2 cut(s) 205, 822
Bbv12I GWGCWC 3 cut(s) 33, 234, 569
BbvI GCAGC 8 cut(s) 56, 59, 82, 85, 88, 679, 718, 721
BccI CCATC 6 cut(s) 52, 200, 242, 266, 299, 709
BceAI ACGGC 7 cut(s) 107, 114, 121, 127, 181, 523, 811
BciT130I CCWGG 3 cut(s) 278, 531, 590
BcnI CCSGG 2 cut(s) 170, 756
BcoDI GTCTC 4 cut(s) 346, 352, 544, 682
BfaI CTAG 1 cut(s) 327
BfoI RGCGCY 3 cut(s) 378, 513, 608
BglI GCCNNNNNGGC 1 cut(s) 731
Bme1390I CCNGG 5 cut(s) 170, 278, 531, 590, 756
Bme18I GGWCC 2 cut(s) 145, 527
BmgT120I GGNCC 5 cut(s) 16, 145, 172, 437, 527
BmrFI CCNGG 5 cut(s) 170, 278, 531, 590, 756
BmsI GCATC 2 cut(s) 113, 189
BmtI GCTAGC 1 cut(s) 330
BpiI GAAGAC 2 cut(s) 205, 822
BpmI CTGGAG 1 cut(s) 646
BpuMI CCSGG 2 cut(s) 170, 756
BsaAI YACGTR 2 cut(s) 209, 227
BsaHI GRCGYC 7 cut(s) 114, 375, 483, 492, 498, 510, 605
BsaI GGTCTC 1 cut(s) 682
BsaXI ACNNNNNCTCC 4 cut(s) 17, 47, 628, 658
Bsc4I CCNNNNNNNGG 5 cut(s) 264, 277, 431, 594, 614
Bse118I RCCGGY 2 cut(s) 305, 311
BseBI CCWGG 3 cut(s) 278, 531, 590
BseGI GGATG 2 cut(s) 180, 450
BseLI CCNNNNNNNGG 5 cut(s) 264, 277, 431, 594, 614
BseMII CTCAG 1 cut(s) 677
BsePI GCGCGC 1 cut(s) 469
BseRI GAGGAG 4 cut(s) 260, 358, 385, 419
BseSI GKGCMC 1 cut(s) 795
BseX3I CGGCCG 1 cut(s) 166
BseXI GCAGC 8 cut(s) 56, 59, 82, 85, 88, 679, 718, 721
BseYI CCCAGC 2 cut(s) 87, 574
Bsh1236I CGCG 2 cut(s) 357, 471
Bsh1285I CGRYCG 2 cut(s) 169, 546
BshFI GGCC 8 cut(s) 17, 122, 168, 174, 237, 252, 281, 438
BshNI GGYRCC 5 cut(s) 308, 314, 374, 509, 604
BsiEI CGRYCG 2 cut(s) 169, 546
BsiHKAI GWGCWC 3 cut(s) 33, 234, 569
BsiSI CCGG 6 cut(s) 169, 306, 312, 372, 650, 755
BslFI GGGAC 1 cut(s) 771
BslI CCNNNNNNNGG 5 cut(s) 264, 277, 431, 594, 614
BsmAI GTCTC 4 cut(s) 346, 352, 544, 682
BsmBI CGTCTC 2 cut(s) 346, 352
BsmFI GGGAC 1 cut(s) 771
BsmI GAATGC 1 cut(s) 688
BsnI GGCC 8 cut(s) 17, 122, 168, 174, 237, 252, 281, 438
Bso31I GGTCTC 1 cut(s) 682
Bsp1286I GDGCHC 6 cut(s) 33, 234, 288, 569, 581, 795
BspANI GGCC 8 cut(s) 17, 122, 168, 174, 237, 252, 281, 438
BspCNI CTCAG 1 cut(s) 676
BspFNI CGCG 2 cut(s) 357, 471
BspOI GCTAGC 1 cut(s) 330
BspT107I GGYRCC 5 cut(s) 308, 314, 374, 509, 604
BspTNI GGTCTC 1 cut(s) 682
BsrFI RCCGGY 2 cut(s) 305, 311
BssAI RCCGGY 2 cut(s) 305, 311
BssHII GCGCGC 1 cut(s) 469
BssNI GRCGYC 7 cut(s) 114, 375, 483, 492, 498, 510, 605
BssT1I CCWWGG 1 cut(s) 486
Bst2UI CCWGG 3 cut(s) 278, 531, 590
Bst4CI ACNGT 1 cut(s) 340
BstACI GRCGYC 7 cut(s) 114, 375, 483, 492, 498, 510, 605
BstBAI YACGTR 2 cut(s) 209, 227
BstC8I GCNNGC 6 cut(s) 188, 328, 461, 467, 471, 791
BstDEI CTNAG 1 cut(s) 663
BstDSI CCRYGG 2 cut(s) 355, 505
BstEII GGTNACC 1 cut(s) 551
BstENI CCTNNNNNAGG 1 cut(s) 275
BstF5I GGATG 2 cut(s) 180, 450
BstFNI CGCG 2 cut(s) 357, 471
BstH2I RGCGCY 3 cut(s) 378, 513, 608
BstHHI GCGC 7 cut(s) 203, 377, 465, 471, 473, 512, 607
BstMAI GTCTC 4 cut(s) 346, 352, 544, 682
BstMCI CGRYCG 2 cut(s) 169, 546
BstMWI GCNNNNNNNGC 5 cut(s) 76, 491, 709, 731, 795
BstNI CCWGG 3 cut(s) 278, 531, 590
BstNSI RCATGY 2 cut(s) 190, 469
BstPI GGTNACC 1 cut(s) 551
BstSCI CCNGG 5 cut(s) 168, 276, 529, 588, 754
BstSLI GKGCMC 1 cut(s) 795
BstUI CGCG 2 cut(s) 357, 471
BstV1I GCAGC 8 cut(s) 56, 59, 82, 85, 88, 679, 718, 721
BstV2I GAAGAC 2 cut(s) 205, 822
BstZI CGGCCG 1 cut(s) 166
BsuRI GGCC 8 cut(s) 17, 122, 168, 174, 237, 252, 281, 438
BtgI CCRYGG 2 cut(s) 355, 505
BtgZI GCGATG 1 cut(s) 280
BtsCI GGATG 2 cut(s) 180, 450
Cac8I GCNNGC 6 cut(s) 188, 328, 461, 467, 471, 791
CfoI GCGC 7 cut(s) 203, 377, 465, 471, 473, 512, 607
Cfr10I RCCGGY 2 cut(s) 305, 311
Cfr13I GGNCC 5 cut(s) 16, 145, 172, 437, 527
Cfr42I CCGCGG 1 cut(s) 358
CseI GACGC 5 cut(s) 103, 186, 491, 500, 506
CviAII CATG 4 cut(s) 187, 466, 562, 571
DdeI CTNAG 1 cut(s) 663
DinI GGCGCC 3 cut(s) 376, 511, 606
EaeI YGGCCR 4 cut(s) 120, 166, 235, 250
EagI CGGCCG 1 cut(s) 166
EciI GGCGGA 4 cut(s) 263, 375, 571, 636
Ecl136II GAGCTC 3 cut(s) 31, 232, 567
EclXI CGGCCG 1 cut(s) 166
Eco130I CCWWGG 1 cut(s) 486
Eco24I GRGCYC 5 cut(s) 33, 234, 288, 569, 581
Eco31I GGTCTC 1 cut(s) 682
Eco47I GGWCC 2 cut(s) 145, 527
Eco52I CGGCCG 1 cut(s) 166
Eco53kI GAGCTC 3 cut(s) 31, 232, 567
Eco72I CACGTG 2 cut(s) 209, 227
Eco91I GGTNACC 1 cut(s) 551
EcoICRI GAGCTC 3 cut(s) 31, 232, 567
EcoNI CCTNNNNNAGG 1 cut(s) 275
EcoO109I RGGNCCY 1 cut(s) 16
EcoO65I GGTNACC 1 cut(s) 551
EcoRII CCWGG 3 cut(s) 276, 529, 588
EcoT14I CCWWGG 1 cut(s) 486
EcoT38I GRGCYC 5 cut(s) 33, 234, 288, 569, 581
EgeI GGCGCC 3 cut(s) 376, 511, 606
EheI GGCGCC 3 cut(s) 376, 511, 606
ErhI CCWWGG 1 cut(s) 486
Esp3I CGTCTC 2 cut(s) 346, 352
FaeI CATG 4 cut(s) 190, 469, 565, 574
FaiI YATR 5 cut(s) 53, 188, 467, 563, 572
FaqI GGGAC 1 cut(s) 771
FatI CATG 4 cut(s) 186, 465, 561, 570
FauI CCCGC 2 cut(s) 331, 782
FblI GTMKAC 1 cut(s) 162
FokI GGATG 2 cut(s) 167, 437
FriOI GRGCYC 5 cut(s) 33, 234, 288, 569, 581
FspBI CTAG 1 cut(s) 327
GlaI GCGC 7 cut(s) 202, 376, 464, 470, 472, 511, 606
GsaI CCCAGC 2 cut(s) 91, 578
GsuI CTGGAG 1 cut(s) 646
HaeII RGCGCY 3 cut(s) 378, 513, 608
HaeIII GGCC 8 cut(s) 17, 122, 168, 174, 237, 252, 281, 438
HapII CCGG 6 cut(s) 169, 306, 312, 372, 650, 755
HgaI GACGC 5 cut(s) 103, 186, 491, 500, 506
HhaI GCGC 7 cut(s) 203, 377, 465, 471, 473, 512, 607
Hin1I GRCGYC 7 cut(s) 114, 375, 483, 492, 498, 510, 605
Hin1II CATG 4 cut(s) 190, 469, 565, 574
Hin6I GCGC 7 cut(s) 201, 375, 463, 469, 471, 510, 605
HinP1I GCGC 7 cut(s) 201, 375, 463, 469, 471, 510, 605
HincII GTYRAC 1 cut(s) 163
HindII GTYRAC 1 cut(s) 163
HinfI GANTC 1 cut(s) 661
HpaII CCGG 6 cut(s) 169, 306, 312, 372, 650, 755
HphI GGTGA 1 cut(s) 545
Hpy166II GTNNAC 1 cut(s) 163
Hpy188I TCNGA 3 cut(s) 13, 247, 810
Hpy188III TCNNGA 2 cut(s) 127, 625
Hpy8I GTNNAC 1 cut(s) 163
Hpy99I CGWCG 8 cut(s) 167, 180, 479, 482, 485, 500, 521, 551
HpyAV CCTTC 2 cut(s) 457, 761
HpyCH4III ACNGT 1 cut(s) 340
HpyCH4IV ACGT 2 cut(s) 208, 226
HpyF10VI GCNNNNNNNGC 5 cut(s) 76, 491, 709, 731, 795
HpyF3I CTNAG 1 cut(s) 663
HpySE526I ACGT 2 cut(s) 208, 226
Hsp92I GRCGYC 7 cut(s) 114, 375, 483, 492, 498, 510, 605
Hsp92II CATG 4 cut(s) 190, 469, 565, 574
HspAI GCGC 7 cut(s) 201, 375, 463, 469, 471, 510, 605
KasI GGCGCC 3 cut(s) 374, 509, 604
KspI CCGCGG 1 cut(s) 358
LmnI GCTCC 8 cut(s) 41, 273, 362, 521, 533, 572, 584, 627
Lsp1109I GCAGC 8 cut(s) 56, 59, 82, 85, 88, 679, 718, 721
LweI GCATC 2 cut(s) 113, 189
MaeI CTAG 1 cut(s) 327
MaeII ACGT 2 cut(s) 208, 226
MaeIII GTNAC 1 cut(s) 551
MboII GAAGA 2 cut(s) 205, 827
MhlI GDGCHC 6 cut(s) 33, 234, 288, 569, 581, 795
MlsI TGGCCA 1 cut(s) 252
MluCI AATT 4 cut(s) 7, 745, 766, 799
MluNI TGGCCA 1 cut(s) 252
Mly113I GGCGCC 3 cut(s) 375, 510, 605
MlyI GAGTC 1 cut(s) 655
MmeI TCCRAC 3 cut(s) 414, 435, 788
Mox20I TGGCCA 1 cut(s) 252
MscI TGGCCA 1 cut(s) 252
MseI TTAA 1 cut(s) 829
MslI CAYNNNNRTG 1 cut(s) 185
Msp20I TGGCCA 1 cut(s) 252
MspA1I CMGCKG 1 cut(s) 357
MspI CCGG 6 cut(s) 169, 306, 312, 372, 650, 755
MspR9I CCNGG 5 cut(s) 170, 278, 531, 590, 756
Mva1269I GAATGC 1 cut(s) 688
MvaI CCWGG 3 cut(s) 278, 531, 590
MvnI CGCG 2 cut(s) 357, 471
MwoI GCNNNNNNNGC 5 cut(s) 76, 491, 709, 731, 795
NarI GGCGCC 3 cut(s) 375, 510, 605
NciI CCSGG 2 cut(s) 170, 756
NheI GCTAGC 1 cut(s) 326
NlaIII CATG 4 cut(s) 190, 469, 565, 574
NmeAIII GCCGAG 5 cut(s) 213, 307, 411, 435, 707
NmuCI GTSAC 1 cut(s) 551
NspI RCATGY 2 cut(s) 190, 469
PaeI GCATGC 2 cut(s) 190, 469
PasI CCCWGGG 1 cut(s) 589
PauI GCGCGC 1 cut(s) 469
PcsI WCGNNNNNNNCGW 1 cut(s) 513
PctI GAATGC 1 cut(s) 688
PflMI CCANNNNNTGG 1 cut(s) 264
PfoI TCCNGGA 1 cut(s) 754
PleI GAGTC 1 cut(s) 655
PluTI GGCGCC 3 cut(s) 378, 513, 608
PmaCI CACGTG 2 cut(s) 209, 227
PmlI CACGTG 2 cut(s) 209, 227
PpsI GAGTC 1 cut(s) 655
Ppu21I YACGTR 2 cut(s) 209, 227
Psp124BI GAGCTC 3 cut(s) 33, 234, 569
Psp6I CCWGG 3 cut(s) 276, 529, 588
PspCI CACGTG 2 cut(s) 209, 227
PspEI GGTNACC 1 cut(s) 551
PspFI CCCAGC 2 cut(s) 87, 574
PspGI CCWGG 3 cut(s) 276, 529, 588
PspPI GGNCC 5 cut(s) 16, 145, 172, 437, 527
PteI GCGCGC 1 cut(s) 469
RseI CAYNNNNRTG 1 cut(s) 185
SacI GAGCTC 3 cut(s) 33, 234, 569
SacII CCGCGG 1 cut(s) 358
SalI GTCGAC 1 cut(s) 161
SaqAI TTAA 1 cut(s) 829
Sau96I GGNCC 5 cut(s) 16, 145, 172, 437, 527
SchI GAGTC 1 cut(s) 655
ScrFI CCNGG 5 cut(s) 170, 278, 531, 590, 756
SduI GDGCHC 6 cut(s) 33, 234, 288, 569, 581, 795
SfaNI GCATC 2 cut(s) 113, 189
SfoI GGCGCC 3 cut(s) 376, 511, 606
Sfr303I CCGCGG 1 cut(s) 358
SgrBI CCGCGG 1 cut(s) 358
SinI GGWCC 2 cut(s) 145, 527
SmiMI CAYNNNNRTG 1 cut(s) 185
SphI GCATGC 2 cut(s) 190, 469
Sse9I AATT 4 cut(s) 7, 745, 766, 799
SspDI GGCGCC 3 cut(s) 374, 509, 604
SspMI CTAG 1 cut(s) 327
SstI GAGCTC 3 cut(s) 33, 234, 569
StyD4I CCNGG 5 cut(s) 168, 276, 529, 588, 754
StyI CCWWGG 1 cut(s) 486
TaaI ACNGT 1 cut(s) 340
TaiI ACGT 2 cut(s) 211, 229
TaqI TCGA 2 cut(s) 162, 261
TaqII GACCGA 4 cut(s) 162, 532, 539, 664
TasI AATT 4 cut(s) 7, 745, 766, 799
Tru1I TTAA 1 cut(s) 829
Tru9I TTAA 1 cut(s) 829
TseFI GTSAC 1 cut(s) 551
TseI GCWGC 8 cut(s) 44, 47, 70, 73, 76, 667, 706, 709
Tsp45I GTSAC 1 cut(s) 551
TspDTI ATGAA 1 cut(s) 439
TspGWI ACGGA 3 cut(s) 334, 534, 630
Van91I CCANNNNNTGG 1 cut(s) 264
VpaK11BI GGWCC 2 cut(s) 145, 527
XagI CCTNNNNNAGG 1 cut(s) 275
XceI RCATGY 2 cut(s) 190, 469
XcmI CCANNNNNNNNNTGG 1 cut(s) 245
XmiI GTMKAC 1 cut(s) 162
XspI CTAG 1 cut(s) 327
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.