Rh4DG079600
TCP Family

Transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
OG0007792
Physical Location & Seq
Reverse (-)
11800140 .. 11802104
1965 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4DG079600.1

Sequence Viewer

Length: 840 bp
ATGTCTAATTCCGAGGCCCCGAATAACGAGCTCTCCAATGGAGCAGCAGCTATGATGATGGAAAGACAGCAGCAGCAGCAGCAGCAACAGCAGCAGACCCAACAGACGGCGGCATCTAACGGCGTCTTGGCCGTCAAGAAGCCGCCGTCAAAGGACCGACACAGCAAGGTCGACGGCCGGGGCCGACGCATCCGCATGCCCATCATCTGCGCGGCACGTGTCTTCCAGCTCACACGTGAGCTCGGCCACAAGTCCGACGGCCAGACCATCGAGTGGCTCCTCCGCCAGGCCGAGCCCTCCATCATCGCCGCAACCGGCACCGGCACCACTCCCGCTAGCTTCTCCACCGTCTCCGTCTCCCTCCGCGGCGGAGCCTCCTCCAGCGCCGCCTCCCTCTCCAACTCCTCCACTACTTCCTCCAACGACCACAAGCCCCTCCTCGGCGGCCCCACCCCCTTCATCCTCGGCAAGCGCATGCGCACCGACGACGACGCCAAGGACGCCGACGCCCACCACGGCGCCACCGACGGAGCAGGACCGGGAGCAGTCTCGGTCGTCGGTCACCACTCCATGAGCTCCATGCTGGGCTCCGCCGCCCAGGGAGGGTTCTGGGCGCCGCACTACGGACAAGTCTGGAGCTTCGCCGCCACGCCGCCGCCGGAGATGATGACTCAGCAGCAGTCGGTCTCCCAACAGCATTCTTTGTTCTTGCCGCAGCAGCCGATGGGGGAAGCCTCGGCGGCCAGAGTGGGAAATTACCTTCCGGGACATCTCAATTTGTTGGCTTCTTTGTCGGGCGGGCACGGCAATTCGGGTCGGAGAGAAGACGACCCGCGTTAA

Protein Analysis

279

Amino Acids

29.44

Weight (kDa)

9.2

Isoelectric Point (pI)

45.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TCP PF03634 50 - 136 1.6e-29 TCP family transcription factor
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 479
AccB1I GGYRCC 4 cut(s) 317, 323, 518, 613
AccB7I CCANNNNNTGG 1 cut(s) 273
AccI GTMKAC 1 cut(s) 171
AccII CGCG 3 cut(s) 212, 366, 835
AcoI YGGCCR 5 cut(s) 129, 175, 244, 259, 741
AcvI CACGTG 2 cut(s) 218, 236
AcyI GRCGYC 6 cut(s) 123, 492, 501, 507, 519, 614
AfiI CCNNNNNNNGG 6 cut(s) 106, 273, 286, 440, 603, 623
AflIII ACRYGT 2 cut(s) 217, 233
AjnI CCWGG 2 cut(s) 285, 597
AluBI AGCT 7 cut(s) 31, 50, 229, 241, 339, 576, 639
AluI AGCT 7 cut(s) 31, 50, 229, 241, 339, 576, 639
Alw21I GWGCWC 3 cut(s) 33, 243, 578
Alw26I GTCTC 4 cut(s) 355, 361, 553, 691
AoxI GGCC 9 cut(s) 15, 129, 175, 181, 244, 259, 288, 445, 741
AspLEI GCGC 6 cut(s) 212, 386, 474, 480, 521, 616
AspS9I GGNCC 5 cut(s) 16, 154, 181, 446, 536
AsuC2I CCSGG 3 cut(s) 179, 540, 765
AsuHPI GGTGA 1 cut(s) 554
AsuNHI GCTAGC 1 cut(s) 335
AvaII GGWCC 2 cut(s) 154, 536
BaeGI GKGCMC 1 cut(s) 804
BanI GGYRCC 4 cut(s) 317, 323, 518, 613
BanII GRGCYC 5 cut(s) 33, 243, 297, 578, 590
BbrPI CACGTG 2 cut(s) 218, 236
BbsI GAAGAC 2 cut(s) 214, 831
Bbv12I GWGCWC 3 cut(s) 33, 243, 578
BccI CCATC 5 cut(s) 52, 209, 275, 308, 718
BceAI ACGGC 8 cut(s) 116, 123, 130, 136, 190, 274, 532, 820
BciT130I CCWGG 2 cut(s) 287, 599
BcnI CCSGG 3 cut(s) 179, 540, 765
BcoDI GTCTC 4 cut(s) 355, 361, 553, 691
BfaI CTAG 1 cut(s) 336
BfoI RGCGCY 3 cut(s) 387, 522, 617
BglI GCCNNNNNGGC 1 cut(s) 740
Bme1390I CCNGG 5 cut(s) 179, 287, 540, 599, 765
Bme18I GGWCC 2 cut(s) 154, 536
BmgT120I GGNCC 5 cut(s) 16, 154, 181, 446, 536
BmrFI CCNGG 5 cut(s) 179, 287, 540, 599, 765
BmsI GCATC 2 cut(s) 122, 198
BmtI GCTAGC 1 cut(s) 339
BpiI GAAGAC 2 cut(s) 214, 831
BpmI CTGGAG 2 cut(s) 364, 655
BpuMI CCSGG 3 cut(s) 179, 540, 765
BsaAI YACGTR 2 cut(s) 218, 236
BsaHI GRCGYC 6 cut(s) 123, 492, 501, 507, 519, 614
BsaI GGTCTC 1 cut(s) 691
BsaXI ACNNNNNCTCC 2 cut(s) 17, 47
Bsc4I CCNNNNNNNGG 6 cut(s) 106, 273, 286, 440, 603, 623
Bse118I RCCGGY 2 cut(s) 314, 320
BseBI CCWGG 2 cut(s) 287, 599
BseGI GGATG 2 cut(s) 189, 459
BseLI CCNNNNNNNGG 6 cut(s) 106, 273, 286, 440, 603, 623
BseMII CTCAG 1 cut(s) 686
BseRI GAGGAG 4 cut(s) 269, 367, 394, 428
BseSI GKGCMC 1 cut(s) 804
BseX3I CGGCCG 1 cut(s) 175
BseYI CCCAGC 1 cut(s) 583
Bsh1236I CGCG 3 cut(s) 212, 366, 835
Bsh1285I CGRYCG 2 cut(s) 178, 555
BshFI GGCC 9 cut(s) 17, 131, 177, 183, 246, 261, 290, 447, 743
BshNI GGYRCC 4 cut(s) 317, 323, 518, 613
BsiEI CGRYCG 2 cut(s) 178, 555
BsiHKAI GWGCWC 3 cut(s) 33, 243, 578
BsiSI CCGG 6 cut(s) 178, 315, 321, 539, 659, 764
BslFI GGGAC 1 cut(s) 780
BslI CCNNNNNNNGG 6 cut(s) 106, 273, 286, 440, 603, 623
BsmAI GTCTC 4 cut(s) 355, 361, 553, 691
BsmBI CGTCTC 2 cut(s) 355, 361
BsmFI GGGAC 1 cut(s) 780
BsmI GAATGC 1 cut(s) 697
BsnI GGCC 9 cut(s) 17, 131, 177, 183, 246, 261, 290, 447, 743
Bso31I GGTCTC 1 cut(s) 691
Bsp1286I GDGCHC 6 cut(s) 33, 243, 297, 578, 590, 804
BspANI GGCC 9 cut(s) 17, 131, 177, 183, 246, 261, 290, 447, 743
BspCNI CTCAG 1 cut(s) 685
BspFNI CGCG 3 cut(s) 212, 366, 835
BspOI GCTAGC 1 cut(s) 339
BspT107I GGYRCC 4 cut(s) 317, 323, 518, 613
BspTNI GGTCTC 1 cut(s) 691
BsrFI RCCGGY 2 cut(s) 314, 320
BssAI RCCGGY 2 cut(s) 314, 320
BssNI GRCGYC 6 cut(s) 123, 492, 501, 507, 519, 614
BssT1I CCWWGG 1 cut(s) 495
Bst2UI CCWGG 2 cut(s) 287, 599
Bst4CI ACNGT 1 cut(s) 349
BstACI GRCGYC 6 cut(s) 123, 492, 501, 507, 519, 614
BstBAI YACGTR 2 cut(s) 218, 236
BstC8I GCNNGC 5 cut(s) 197, 337, 470, 476, 800
BstDEI CTNAG 1 cut(s) 672
BstDSI CCRYGG 2 cut(s) 364, 514
BstEII GGTNACC 1 cut(s) 560
BstENI CCTNNNNNAGG 1 cut(s) 284
BstF5I GGATG 2 cut(s) 189, 459
BstFNI CGCG 3 cut(s) 212, 366, 835
BstH2I RGCGCY 3 cut(s) 387, 522, 617
BstHHI GCGC 6 cut(s) 212, 386, 474, 480, 521, 616
BstMAI GTCTC 4 cut(s) 355, 361, 553, 691
BstMCI CGRYCG 2 cut(s) 178, 555
BstMWI GCNNNNNNNGC 9 cut(s) 76, 79, 82, 88, 91, 500, 718, 740, 804
BstNI CCWGG 2 cut(s) 287, 599
BstNSI RCATGY 2 cut(s) 199, 478
BstPI GGTNACC 1 cut(s) 560
BstSCI CCNGG 5 cut(s) 177, 285, 538, 597, 763
BstSLI GKGCMC 1 cut(s) 804
BstUI CGCG 3 cut(s) 212, 366, 835
BstV2I GAAGAC 2 cut(s) 214, 831
BstZI CGGCCG 1 cut(s) 175
BsuRI GGCC 9 cut(s) 17, 131, 177, 183, 246, 261, 290, 447, 743
BtgI CCRYGG 2 cut(s) 364, 514
BtgZI GCGATG 1 cut(s) 289
BtsCI GGATG 2 cut(s) 189, 459
Cac8I GCNNGC 5 cut(s) 197, 337, 470, 476, 800
CfoI GCGC 6 cut(s) 212, 386, 474, 480, 521, 616
Cfr10I RCCGGY 2 cut(s) 314, 320
Cfr13I GGNCC 5 cut(s) 16, 154, 181, 446, 536
Cfr42I CCGCGG 1 cut(s) 367
CseI GACGC 5 cut(s) 112, 195, 500, 509, 515
CviAII CATG 4 cut(s) 196, 475, 571, 580
DdeI CTNAG 1 cut(s) 672
DinI GGCGCC 2 cut(s) 520, 615
EaeI YGGCCR 5 cut(s) 129, 175, 244, 259, 741
EagI CGGCCG 1 cut(s) 175
EciI GGCGGA 3 cut(s) 272, 384, 580
Ecl136II GAGCTC 3 cut(s) 31, 241, 576
EclXI CGGCCG 1 cut(s) 175
Eco130I CCWWGG 1 cut(s) 495
Eco24I GRGCYC 5 cut(s) 33, 243, 297, 578, 590
Eco31I GGTCTC 1 cut(s) 691
Eco47I GGWCC 2 cut(s) 154, 536
Eco52I CGGCCG 1 cut(s) 175
Eco53kI GAGCTC 3 cut(s) 31, 241, 576
Eco72I CACGTG 2 cut(s) 218, 236
Eco91I GGTNACC 1 cut(s) 560
EcoICRI GAGCTC 3 cut(s) 31, 241, 576
EcoNI CCTNNNNNAGG 1 cut(s) 284
EcoO109I RGGNCCY 1 cut(s) 16
EcoO65I GGTNACC 1 cut(s) 560
EcoRII CCWGG 2 cut(s) 285, 597
EcoT14I CCWWGG 1 cut(s) 495
EcoT38I GRGCYC 5 cut(s) 33, 243, 297, 578, 590
EgeI GGCGCC 2 cut(s) 520, 615
EheI GGCGCC 2 cut(s) 520, 615
ErhI CCWWGG 1 cut(s) 495
Esp3I CGTCTC 2 cut(s) 355, 361
FaeI CATG 4 cut(s) 199, 478, 574, 583
FaiI YATR 5 cut(s) 53, 197, 476, 572, 581
FaqI GGGAC 1 cut(s) 780
FatI CATG 4 cut(s) 195, 474, 570, 579
FauI CCCGC 2 cut(s) 340, 791
FblI GTMKAC 1 cut(s) 171
FokI GGATG 2 cut(s) 176, 446
FriOI GRGCYC 5 cut(s) 33, 243, 297, 578, 590
FspAI RTGCGCAY 1 cut(s) 479
FspBI CTAG 1 cut(s) 336
FspI TGCGCA 1 cut(s) 479
GlaI GCGC 6 cut(s) 211, 385, 473, 479, 520, 615
GsaI CCCAGC 1 cut(s) 587
GsuI CTGGAG 2 cut(s) 364, 655
HaeII RGCGCY 3 cut(s) 387, 522, 617
HaeIII GGCC 9 cut(s) 17, 131, 177, 183, 246, 261, 290, 447, 743
HapII CCGG 6 cut(s) 178, 315, 321, 539, 659, 764
HgaI GACGC 5 cut(s) 112, 195, 500, 509, 515
HhaI GCGC 6 cut(s) 212, 386, 474, 480, 521, 616
Hin1I GRCGYC 6 cut(s) 123, 492, 501, 507, 519, 614
Hin1II CATG 4 cut(s) 199, 478, 574, 583
Hin6I GCGC 6 cut(s) 210, 384, 472, 478, 519, 614
HinP1I GCGC 6 cut(s) 210, 384, 472, 478, 519, 614
HincII GTYRAC 1 cut(s) 172
HindII GTYRAC 1 cut(s) 172
HinfI GANTC 1 cut(s) 670
HpaII CCGG 6 cut(s) 178, 315, 321, 539, 659, 764
HphI GGTGA 1 cut(s) 554
Hpy166II GTNNAC 1 cut(s) 172
Hpy188I TCNGA 3 cut(s) 13, 256, 819
Hpy188III TCNNGA 2 cut(s) 136, 634
Hpy8I GTNNAC 1 cut(s) 172
Hpy99I CGWCG 9 cut(s) 176, 189, 260, 488, 491, 494, 509, 530, 560
HpyAV CCTTC 2 cut(s) 466, 770
HpyCH4III ACNGT 1 cut(s) 349
HpyCH4IV ACGT 2 cut(s) 217, 235
HpyF10VI GCNNNNNNNGC 9 cut(s) 76, 79, 82, 88, 91, 500, 718, 740, 804
HpyF3I CTNAG 1 cut(s) 672
HpySE526I ACGT 2 cut(s) 217, 235
Hsp92I GRCGYC 6 cut(s) 123, 492, 501, 507, 519, 614
Hsp92II CATG 4 cut(s) 199, 478, 574, 583
HspAI GCGC 6 cut(s) 210, 384, 472, 478, 519, 614
KasI GGCGCC 2 cut(s) 518, 613
KspI CCGCGG 1 cut(s) 367
LmnI GCTCC 8 cut(s) 41, 282, 371, 530, 542, 581, 593, 636
LweI GCATC 2 cut(s) 122, 198
MaeI CTAG 1 cut(s) 336
MaeII ACGT 2 cut(s) 217, 235
MaeIII GTNAC 1 cut(s) 560
MboII GAAGA 2 cut(s) 214, 836
MhlI GDGCHC 6 cut(s) 33, 243, 297, 578, 590, 804
MluCI AATT 4 cut(s) 7, 754, 775, 808
Mly113I GGCGCC 2 cut(s) 519, 614
MlyI GAGTC 1 cut(s) 664
MmeI TCCRAC 4 cut(s) 279, 423, 444, 797
MseI TTAA 1 cut(s) 838
MslI CAYNNNNRTG 1 cut(s) 194
MspA1I CMGCKG 1 cut(s) 366
MspI CCGG 6 cut(s) 178, 315, 321, 539, 659, 764
MspR9I CCNGG 5 cut(s) 179, 287, 540, 599, 765
Mva1269I GAATGC 1 cut(s) 697
MvaI CCWGG 2 cut(s) 287, 599
MvnI CGCG 3 cut(s) 212, 366, 835
MwoI GCNNNNNNNGC 9 cut(s) 76, 79, 82, 88, 91, 500, 718, 740, 804
NarI GGCGCC 2 cut(s) 519, 614
NciI CCSGG 3 cut(s) 179, 540, 765
NheI GCTAGC 1 cut(s) 335
NlaIII CATG 4 cut(s) 199, 478, 574, 583
NmeAIII GCCGAG 5 cut(s) 222, 316, 420, 444, 716
NmuCI GTSAC 1 cut(s) 560
NsbI TGCGCA 1 cut(s) 479
NspI RCATGY 2 cut(s) 199, 478
PaeI GCATGC 2 cut(s) 199, 478
PasI CCCWGGG 1 cut(s) 598
PcsI WCGNNNNNNNCGW 1 cut(s) 522
PctI GAATGC 1 cut(s) 697
PflMI CCANNNNNTGG 1 cut(s) 273
PfoI TCCNGGA 1 cut(s) 763
PleI GAGTC 1 cut(s) 664
PluTI GGCGCC 2 cut(s) 522, 617
PmaCI CACGTG 2 cut(s) 218, 236
PmlI CACGTG 2 cut(s) 218, 236
PpsI GAGTC 1 cut(s) 664
Ppu21I YACGTR 2 cut(s) 218, 236
Psp124BI GAGCTC 3 cut(s) 33, 243, 578
Psp6I CCWGG 2 cut(s) 285, 597
PspCI CACGTG 2 cut(s) 218, 236
PspEI GGTNACC 1 cut(s) 560
PspFI CCCAGC 1 cut(s) 583
PspGI CCWGG 2 cut(s) 285, 597
PspPI GGNCC 5 cut(s) 16, 154, 181, 446, 536
RseI CAYNNNNRTG 1 cut(s) 194
SacI GAGCTC 3 cut(s) 33, 243, 578
SacII CCGCGG 1 cut(s) 367
SalI GTCGAC 1 cut(s) 170
SaqAI TTAA 1 cut(s) 838
Sau96I GGNCC 5 cut(s) 16, 154, 181, 446, 536
SchI GAGTC 1 cut(s) 664
ScrFI CCNGG 5 cut(s) 179, 287, 540, 599, 765
SduI GDGCHC 6 cut(s) 33, 243, 297, 578, 590, 804
SfaNI GCATC 2 cut(s) 122, 198
SfoI GGCGCC 2 cut(s) 520, 615
Sfr303I CCGCGG 1 cut(s) 367
SgrBI CCGCGG 1 cut(s) 367
SinI GGWCC 2 cut(s) 154, 536
SmiMI CAYNNNNRTG 1 cut(s) 194
SphI GCATGC 2 cut(s) 199, 478
Sse9I AATT 4 cut(s) 7, 754, 775, 808
SspDI GGCGCC 2 cut(s) 518, 613
SspMI CTAG 1 cut(s) 336
SstI GAGCTC 3 cut(s) 33, 243, 578
StyD4I CCNGG 5 cut(s) 177, 285, 538, 597, 763
StyI CCWWGG 1 cut(s) 495
TaaI ACNGT 1 cut(s) 349
TaiI ACGT 2 cut(s) 220, 238
TaqI TCGA 2 cut(s) 171, 270
TaqII GACCGA 4 cut(s) 171, 541, 548, 673
TasI AATT 4 cut(s) 7, 754, 775, 808
Tru1I TTAA 1 cut(s) 838
Tru9I TTAA 1 cut(s) 838
TseFI GTSAC 1 cut(s) 560
Tsp45I GTSAC 1 cut(s) 560
TspDTI ATGAA 1 cut(s) 448
TspGWI ACGGA 3 cut(s) 343, 543, 639
Van91I CCANNNNNTGG 1 cut(s) 273
VpaK11BI GGWCC 2 cut(s) 154, 536
XagI CCTNNNNNAGG 1 cut(s) 284
XceI RCATGY 2 cut(s) 199, 478
XmiI GTMKAC 1 cut(s) 171
XspI CTAG 1 cut(s) 336
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.