Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr16

Orthogroup ID

OG0007792

Physical Location & Seq

Genomic Coordinates Reverse (-)

26388679 .. 26389521

Gene Structure 843 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD16G1243300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 843 bp

ATGTCAAATTCCGAGGACCCTAATAACGAGCTCACTAACGGCGGCGGCGGCGGAGGAGCTATGGTCGAGCAGACCTCGCAAAGGCCGTCAAGTAACGGCGTCTTAGCCCTCAAGAAGCCCCCTTCTAAGGACCGACACAGCAAGGTCGATGGACGAGGCCGCCGCATCCGCATGCCAATCATCTGCGCCGCGCGTGTCTTCCAGCTCACACGGGAGCTCGGCCACAAGTCCGACGGCCAGACCATCGAGTGGCTCCTCCGCCAGGCCGAGCCCTCCATCATCGCCGCCACCGGCACCGGAACCACTCCCGCCTCCTTCTCTACTGTATCCGTCTCCCTCCGCGGCGGCCACACCTCCTCCTCCGCCCCCTCCTCCGACCACAAGCCCCAACTCCTAGGTCCCACCCCCTTCATCCTCGGCAAGCGCGTCCGTGGTCCCCTCGACGACCACGACAACAACCACAACCACGACGCCTCCGCCACCAAGAACCCCTCCGACCACCACGCCAACAACGACGGAGCCGTGTCGGTGGTCGGGCACTCCATGGCCTCCATGCTGGGCCCCACCGCAGGGGGACCCGGCGGGTTCTGGGCCCCGCACTTCGGGCAGGTATGGAGCTTCGCCGCGACGCCGCCCCCGGAGCTGATGGACCAGTCAGCGGTGTCCCACCAGCAGCAGCAACAGCACCATCAGCAGCAGCATTCGCTGTTCTTGCAGCAGCAGACGATGGGCGAGGCGTCGGCGGCCAGAGTAGGAAATTACCTTCCAGGACATCTCAACTTGTTGGCTTCATTGTCGGGTGGGCACGGCAATTCGGGTCAGAGAGAAGACGACCGGCGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0042752 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043433 GO:0044092 GO:0044424 GO:0044464 GO:0048519 GO:0050789 GO:0050794 GO:0051090 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0065009 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04712 map04712

Pfam Domains

Protein Families

TCP

Protein Analysis

281

Amino Acids

29.71

Weight (kDa)

8.08

Isoelectric Point (pI)

46.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TCP	PF03634	42 - 162	1.7e-30	TCP family transcription factor

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007792)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G35560 AT1G72010 AT3G45150 AT3G47620 AT5G08330 AT5G23280 AT5G41030
fragaria_vesca	FvH4_4g06720
malus_domestica	MD13G1238400.v1.1 MD16G1243300.v1.1
prunus_persica	Prupe.1G070500_v2.0.a1 Prupe.1G070500_v2.0.a1 Prupe.1G070500_v2.0.a1
pyrus_communis	pycom13g21080 pycom16g20410
rosa_chinensis	RchiOBHm_Chr4g0398661
rosa_laevigata	RLG00000009336
rosa_multiflora	Rmu_co8332803.1_g000001
rosa_rugosa	Rorug04G0010200
rosa_samantha	Rh4AG088200 Rh4BG084800 Rh4CG096400 Rh4DG079600
rosa_wichuraiana	Rw4G007310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	598
AccB1I	GGYRCC	1 cut(s)	293
AccB7I	CCANNNNNTGG	1 cut(s)	249
AccII	CGCG	5 cut(s)	191, 193, 342, 426, 626
AcoI	YGGCCR	4 cut(s)	220, 235, 346, 744
AcsI	RAATTY	1 cut(s)	7
AcyI	GRCGYC	4 cut(s)	99, 471, 629, 737
AfiI	CCNNNNNNNGG	8 cut(s)	81, 127, 249, 262, 569, 570, 602, 658
AjnI	CCWGG	2 cut(s)	261, 766
AluBI	AGCT	6 cut(s)	31, 59, 205, 217, 618, 643
AluI	AGCT	6 cut(s)	31, 59, 205, 217, 618, 643
Alw21I	GWGCWC	2 cut(s)	33, 219
Alw26I	GTCTC	1 cut(s)	337
ApaI	GGGCCC	2 cut(s)	563, 595
ApeKI	GCWGC	6 cut(s)	673, 676, 694, 697, 715, 718
ApoI	RAATTY	1 cut(s)	7
AspA2I	CCTAGG	1 cut(s)	394
AspLEI	GCGC	4 cut(s)	188, 193, 426, 840
AsuC2I	CCSGG	2 cut(s)	579, 638
AvaII	GGWCC	6 cut(s)	16, 130, 398, 434, 575, 649
AvrII	CCTAGG	1 cut(s)	394
BaeGI	GKGCMC	4 cut(s)	540, 563, 595, 807
BanI	GGYRCC	1 cut(s)	293
BanII	GRGCYC	5 cut(s)	33, 219, 273, 563, 595
BbsI	GAAGAC	2 cut(s)	190, 834
Bbv12I	GWGCWC	2 cut(s)	33, 219
BbvI	GCAGC	6 cut(s)	685, 688, 706, 709, 727, 730
BccI	CCATC	6 cut(s)	143, 251, 284, 640, 696, 721
BceAI	ACGGC	6 cut(s)	55, 70, 112, 250, 506, 823
BciT130I	CCWGG	2 cut(s)	263, 768
BciVI	GTATCC	1 cut(s)	337
BcnI	CCSGG	2 cut(s)	579, 638
BcoDI	GTCTC	1 cut(s)	337
BfaI	CTAG	1 cut(s)	395
BfoI	RGCGCY	1 cut(s)	841
BfuAI	ACCTGC	1 cut(s)	598
BfuI	GTATCC	1 cut(s)	337
BlnI	CCTAGG	1 cut(s)	394
Bme1390I	CCNGG	4 cut(s)	263, 579, 638, 768
Bme18I	GGWCC	6 cut(s)	16, 130, 398, 434, 575, 649
BmrFI	CCNGG	4 cut(s)	263, 579, 638, 768
BmsI	GCATC	1 cut(s)	174
BpiI	GAAGAC	2 cut(s)	190, 834
BplI	GAGNNNNNCTC	2 cut(s)	59, 91
BpuEI	CTTGAG	1 cut(s)	95
BpuMI	CCSGG	2 cut(s)	579, 638
BsaHI	GRCGYC	4 cut(s)	99, 471, 629, 737
BsaJI	CCNNGG	7 cut(s)	12, 340, 394, 415, 430, 543, 636
BsaWI	WCCGGW	1 cut(s)	296
BsaXI	ACNNNNNCTCC	6 cut(s)	48, 78, 341, 371, 458, 488
Bsc4I	CCNNNNNNNGG	8 cut(s)	81, 127, 249, 262, 569, 570, 602, 658
Bse118I	RCCGGY	2 cut(s)	290, 834
Bse1I	ACTGG	1 cut(s)	652
BseBI	CCWGG	2 cut(s)	263, 768
BseDI	CCNNGG	7 cut(s)	12, 340, 394, 415, 430, 543, 636
BseGI	GGATG	2 cut(s)	165, 411
BseLI	CCNNNNNNNGG	8 cut(s)	81, 127, 249, 262, 569, 570, 602, 658
BseNI	ACTGG	1 cut(s)	652
BseRI	GAGGAG	5 cut(s)	69, 245, 346, 349, 361
BseSI	GKGCMC	4 cut(s)	540, 563, 595, 807
BseXI	GCAGC	6 cut(s)	685, 688, 706, 709, 727, 730
BseYI	CCCAGC	1 cut(s)	556
Bsh1236I	CGCG	5 cut(s)	191, 193, 342, 426, 626
Bsh1285I	CGRYCG	1 cut(s)	835
BshNI	GGYRCC	1 cut(s)	293
BsiEI	CGRYCG	1 cut(s)	835
BsiHKAI	GWGCWC	2 cut(s)	33, 219
BsiSI	CCGG	5 cut(s)	291, 297, 579, 638, 835
BslFI	GGGAC	4 cut(s)	384, 420, 588, 649
BslI	CCNNNNNNNGG	8 cut(s)	81, 127, 249, 262, 569, 570, 602, 658
BsmAI	GTCTC	1 cut(s)	337
BsmBI	CGTCTC	1 cut(s)	337
BsmFI	GGGAC	4 cut(s)	384, 420, 588, 649
BsmI	GAATGC	1 cut(s)	700
Bsp120I	GGGCCC	2 cut(s)	559, 591
Bsp1286I	GDGCHC	7 cut(s)	33, 219, 273, 540, 563, 595, 807
Bsp19I	CCATGG	1 cut(s)	543
BspFNI	CGCG	5 cut(s)	191, 193, 342, 426, 626
BspMI	ACCTGC	1 cut(s)	598
BspT107I	GGYRCC	1 cut(s)	293
BsrFI	RCCGGY	2 cut(s)	290, 834
BsrI	ACTGG	1 cut(s)	652
BssAI	RCCGGY	2 cut(s)	290, 834
BssECI	CCNNGG	7 cut(s)	12, 340, 394, 415, 430, 543, 636
BssNI	GRCGYC	4 cut(s)	99, 471, 629, 737
BssT1I	CCWWGG	2 cut(s)	394, 543
Bst2UI	CCWGG	2 cut(s)	263, 768
Bst4CI	ACNGT	1 cut(s)	325
BstACI	GRCGYC	4 cut(s)	99, 471, 629, 737
BstC8I	GCNNGC	2 cut(s)	173, 422
BstDEI	CTNAG	2 cut(s)	103, 126
BstDSI	CCRYGG	3 cut(s)	340, 430, 543
BstENI	CCTNNNNNAGG	2 cut(s)	79, 260
BstF5I	GGATG	2 cut(s)	165, 411
BstFNI	CGCG	5 cut(s)	191, 193, 342, 426, 626
BstH2I	RGCGCY	1 cut(s)	841
BstHHI	GCGC	4 cut(s)	188, 193, 426, 840
BstMAI	GTCTC	1 cut(s)	337
BstMCI	CGRYCG	1 cut(s)	835
BstNI	CCWGG	2 cut(s)	263, 768
BstNSI	RCATGY	1 cut(s)	175
BstSCI	CCNGG	4 cut(s)	261, 577, 636, 766
BstSLI	GKGCMC	4 cut(s)	540, 563, 595, 807
BstUI	CGCG	5 cut(s)	191, 193, 342, 426, 626
BstV1I	GCAGC	6 cut(s)	685, 688, 706, 709, 727, 730
BstV2I	GAAGAC	2 cut(s)	190, 834
BsuI	GTATCC	1 cut(s)	337
BtgI	CCRYGG	3 cut(s)	340, 430, 543
BtgZI	GCGATG	1 cut(s)	265
BtsCI	GGATG	2 cut(s)	165, 411
BveI	ACCTGC	1 cut(s)	598
Cac8I	GCNNGC	2 cut(s)	173, 422
CfoI	GCGC	4 cut(s)	188, 193, 426, 840
Cfr10I	RCCGGY	2 cut(s)	290, 834
Cfr42I	CCGCGG	1 cut(s)	343
CseI	GACGC	5 cut(s)	88, 415, 479, 637, 726
CviAII	CATG	3 cut(s)	172, 544, 553
DdeI	CTNAG	2 cut(s)	103, 126
EaeI	YGGCCR	4 cut(s)	220, 235, 346, 744
EciI	GGCGGA	4 cut(s)	66, 248, 352, 466
Ecl136II	GAGCTC	2 cut(s)	31, 217
Eco130I	CCWWGG	2 cut(s)	394, 543
Eco24I	GRGCYC	5 cut(s)	33, 219, 273, 563, 595
Eco47I	GGWCC	6 cut(s)	16, 130, 398, 434, 575, 649
Eco53kI	GAGCTC	2 cut(s)	31, 217
EcoICRI	GAGCTC	2 cut(s)	31, 217
EcoNI	CCTNNNNNAGG	2 cut(s)	79, 260
EcoO109I	RGGNCCY	5 cut(s)	16, 398, 560, 575, 592
EcoRII	CCWGG	2 cut(s)	261, 766
EcoT14I	CCWWGG	2 cut(s)	394, 543
EcoT38I	GRGCYC	5 cut(s)	33, 219, 273, 563, 595
ErhI	CCWWGG	2 cut(s)	394, 543
Esp3I	CGTCTC	1 cut(s)	337
FaeI	CATG	3 cut(s)	175, 547, 556
FaiI	YATR	5 cut(s)	62, 173, 545, 554, 613
FaqI	GGGAC	4 cut(s)	384, 420, 588, 649
FatI	CATG	3 cut(s)	171, 543, 552
FauI	CCCGC	3 cut(s)	316, 575, 603
FokI	GGATG	2 cut(s)	152, 398
FriOI	GRGCYC	5 cut(s)	33, 219, 273, 563, 595
FspBI	CTAG	1 cut(s)	395
GlaI	GCGC	4 cut(s)	187, 192, 425, 839
GsaI	CCCAGC	1 cut(s)	560
HaeII	RGCGCY	1 cut(s)	841
HapII	CCGG	5 cut(s)	291, 297, 579, 638, 835
HgaI	GACGC	5 cut(s)	88, 415, 479, 637, 726
HhaI	GCGC	4 cut(s)	188, 193, 426, 840
Hin1I	GRCGYC	4 cut(s)	99, 471, 629, 737
Hin1II	CATG	3 cut(s)	175, 547, 556
Hin6I	GCGC	4 cut(s)	186, 191, 424, 838
HinP1I	GCGC	4 cut(s)	186, 191, 424, 838
HpaII	CCGG	5 cut(s)	291, 297, 579, 638, 835
Hpy188I	TCNGA	5 cut(s)	13, 232, 376, 496, 822
Hpy188III	TCNNGA	1 cut(s)	112
Hpy99I	CGWCG	6 cut(s)	236, 446, 473, 518, 631, 742
HpyAV	CCTTC	4 cut(s)	132, 325, 418, 773
HpyCH4III	ACNGT	1 cut(s)	325
HpyCH4V	TGCA	1 cut(s)	715
HpyF3I	CTNAG	2 cut(s)	103, 126
Hsp92I	GRCGYC	4 cut(s)	99, 471, 629, 737
Hsp92II	CATG	3 cut(s)	175, 547, 556
HspAI	GCGC	4 cut(s)	186, 191, 424, 838
KflI	GGGWCCC	1 cut(s)	575
KspI	CCGCGG	1 cut(s)	343
LmnI	GCTCC	6 cut(s)	56, 214, 258, 518, 615, 640
Lsp1109I	GCAGC	6 cut(s)	685, 688, 706, 709, 727, 730
LweI	GCATC	1 cut(s)	174
MaeI	CTAG	1 cut(s)	395
MaeIII	GTNAC	1 cut(s)	92
MboII	GAAGA	2 cut(s)	190, 839
MhlI	GDGCHC	7 cut(s)	33, 219, 273, 540, 563, 595, 807
MluCI	AATT	3 cut(s)	7, 757, 811
MmeI	TCCRAC	3 cut(s)	255, 399, 519
MslI	CAYNNNNRTG	1 cut(s)	170
MspA1I	CMGCKG	2 cut(s)	342, 659
MspI	CCGG	5 cut(s)	291, 297, 579, 638, 835
MspR9I	CCNGG	4 cut(s)	263, 579, 638, 768
MteI	GCGCNGCGC	1 cut(s)	189
Mva1269I	GAATGC	1 cut(s)	700
MvaI	CCWGG	2 cut(s)	263, 768
MvnI	CGCG	5 cut(s)	191, 193, 342, 426, 626
NciI	CCSGG	2 cut(s)	579, 638
NcoI	CCATGG	1 cut(s)	543
NlaIII	CATG	3 cut(s)	175, 547, 556
NmeAIII	GCCGAG	3 cut(s)	198, 292, 396
NspI	RCATGY	1 cut(s)	175
PaeI	GCATGC	1 cut(s)	175
PcsI	WCGNNNNNNNCGW	5 cut(s)	83, 423, 447, 510, 519
PctI	GAATGC	1 cut(s)	700
PflMI	CCANNNNNTGG	1 cut(s)	249
PfoI	TCCNGGA	1 cut(s)	766
PpuMI	RGGWCCY	3 cut(s)	16, 398, 575
Psp124BI	GAGCTC	2 cut(s)	33, 219
Psp5II	RGGWCCY	3 cut(s)	16, 398, 575
Psp6I	CCWGG	2 cut(s)	261, 766
PspFI	CCCAGC	1 cut(s)	556
PspGI	CCWGG	2 cut(s)	261, 766
PspOMI	GGGCCC	2 cut(s)	559, 591
PspPPI	RGGWCCY	3 cut(s)	16, 398, 575
RseI	CAYNNNNRTG	1 cut(s)	170
SacI	GAGCTC	2 cut(s)	33, 219
SacII	CCGCGG	1 cut(s)	343
ScrFI	CCNGG	4 cut(s)	263, 579, 638, 768
SduI	GDGCHC	7 cut(s)	33, 219, 273, 540, 563, 595, 807
SfaNI	GCATC	1 cut(s)	174
Sfr303I	CCGCGG	1 cut(s)	343
SgrBI	CCGCGG	1 cut(s)	343
SinI	GGWCC	6 cut(s)	16, 130, 398, 434, 575, 649
SmiMI	CAYNNNNRTG	1 cut(s)	170
SmlI	CTYRAG	1 cut(s)	110
SmoI	CTYRAG	1 cut(s)	110
SphI	GCATGC	1 cut(s)	175
Sse9I	AATT	3 cut(s)	7, 757, 811
SspMI	CTAG	1 cut(s)	395
SstI	GAGCTC	2 cut(s)	33, 219
StyD4I	CCNGG	4 cut(s)	261, 577, 636, 766
StyI	CCWWGG	2 cut(s)	394, 543
TaaI	ACNGT	1 cut(s)	325
TaqI	TCGA	4 cut(s)	66, 147, 246, 441
TaqII	GACCGA	1 cut(s)	147
TasI	AATT	3 cut(s)	7, 757, 811
TseI	GCWGC	6 cut(s)	673, 676, 694, 697, 715, 718
TspDTI	ATGAA	2 cut(s)	400, 780
TspGWI	ACGGA	3 cut(s)	319, 419, 531
Van91I	CCANNNNNTGG	1 cut(s)	249
VpaK11BI	GGWCC	6 cut(s)	16, 130, 398, 434, 575, 649
XagI	CCTNNNNNAGG	2 cut(s)	79, 260
XapI	RAATTY	1 cut(s)	7
XceI	RCATGY	1 cut(s)	175
XmaJI	CCTAGG	1 cut(s)	394
XspI	CTAG	1 cut(s)	395

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.