Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0007792

Physical Location & Seq

Genomic Coordinates Forward (+)

16428706 .. 16429679

Gene Structure 974 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G41030.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 732 bp

ATGGTCATGGAGCCCAAGAAGAACCAAAATCTACCAAGTTTCTTAAACCCATCACGACAGAATCAGGACAACGACAAGAAGAGGAAACAAACAGAGGTTAAAGGTTTCGACATTGTGGTCGGCGAAAAGAGGAAGAAGAAGGAGAATGAAGAGGAAGACCAAGAAATTCAGATTCTTTATGAGAAGGAGAAGAAGAAACCAAACAAAGATCGTCACCTTAAAGTTGAAGGAAGAGGTCGTAGAGTTAGGTTACCTCCACTCTGTGCAGCAAGGATTTATCAATTGACTAAAGAATTAGGTCACAAATCAGATGGTGAGACTCTTGAATGGTTGCTTCAACATGCTGAGCCATCGATACTCTCTGCTACTGTAAATGGTATCAAACCCACTGAGTCTGTTGTTTCTCAACCTCCTCTCACGGCTGATTTGATGATTTGTCATAGCGTTGAAGAAGCTTCAAGGACTCAAATGGAGGCAAATGGGTTGTGGAGAAATGAAACAGGACAGACCATTGGAGGGTTTGATCTGAATTACGGAATTGGGTTTGATTTCAATGGTGTTCCAGAGATTGGTTTTGGAGATAATCAAACGCCTGGACTTGAATTAAGGCTGTCTCAAGTTGGGGTTTTGAATCCACAGGTTTTTCAACAAATGGGTAAAGAACAGTTCAGGGTTCTTCATCATCATTCACATGAAGATCAGCAGCAGAGTGCAGAGGAAAATGGTTCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000976 GO:0000987 GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009653 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TCP

Protein Analysis

243

Amino Acids

27.62

Weight (kDa)

6.1

Isoelectric Point (pI)

46.43

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TCP	PF03634	68 - 130	1e-21	TCP family transcription factor

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007792)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G35560 AT1G72010 AT3G45150 AT3G47620 AT5G08330 AT5G23280 AT5G41030
fragaria_vesca	FvH4_4g06720
malus_domestica	MD13G1238400.v1.1 MD16G1243300.v1.1
prunus_persica	Prupe.1G070500_v2.0.a1 Prupe.1G070500_v2.0.a1 Prupe.1G070500_v2.0.a1
pyrus_communis	pycom13g21080 pycom16g20410
rosa_chinensis	RchiOBHm_Chr4g0398661
rosa_laevigata	RLG00000009336
rosa_multiflora	Rmu_co8332803.1_g000001
rosa_rugosa	Rorug04G0010200
rosa_samantha	Rh4AG088200 Rh4BG084800 Rh4CG096400 Rh4DG079600
rosa_wichuraiana	Rw4G007310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	116
AccB7I	CCANNNNNTGG	1 cut(s)	569
AcsI	RAATTY	1 cut(s)	165
AdeI	CACNNNGTG	1 cut(s)	263
AfiI	CCNNNNNNNGG	2 cut(s)	516, 569
AgsI	TTSAA	9 cut(s)	227, 326, 338, 449, 459, 553, 602, 631, 647
AjnI	CCWGG	1 cut(s)	592
AluBI	AGCT	1 cut(s)	455
AluI	AGCT	1 cut(s)	455
Alw26I	GTCTC	2 cut(s)	311, 618
ApeKI	GCWGC	2 cut(s)	266, 703
ApoI	RAATTY	1 cut(s)	165
AsuHPI	GGTGA	2 cut(s)	206, 326
BanII	GRGCYC	1 cut(s)	15
BbsI	GAAGAC	1 cut(s)	162
BbvI	GCAGC	2 cut(s)	278, 715
BccI	CCATC	3 cut(s)	58, 305, 358
BceAI	ACGGC	1 cut(s)	435
BciT130I	CCWGG	1 cut(s)	594
BcoDI	GTCTC	2 cut(s)	311, 618
BisI	GCNGC	2 cut(s)	267, 704
BlpI	GCTNAGC	1 cut(s)	345
BlsI	GCNGC	2 cut(s)	268, 705
Bme1390I	CCNGG	1 cut(s)	594
BmiI	GGNNCC	1 cut(s)	12
BmrFI	CCNGG	1 cut(s)	594
BpiI	GAAGAC	1 cut(s)	162
Bpu1102I	GCTNAGC	1 cut(s)	345
BpuEI	CTTGAG	1 cut(s)	600
Bsa29I	ATCGAT	1 cut(s)	353
Bsc4I	CCNNNNNNNGG	2 cut(s)	516, 569
BseBI	CCWGG	1 cut(s)	594
BseCI	ATCGAT	1 cut(s)	353
BseLI	CCNNNNNNNGG	2 cut(s)	516, 569
BseMII	CTCAG	2 cut(s)	336, 381
BseRI	GAGGAG	1 cut(s)	402
BseXI	GCAGC	2 cut(s)	278, 715
BsgI	GTGCAG	2 cut(s)	285, 732
BshVI	ATCGAT	1 cut(s)	353
BslI	CCNNNNNNNGG	2 cut(s)	516, 569
BsmAI	GTCTC	2 cut(s)	311, 618
Bsp1286I	GDGCHC	1 cut(s)	15
Bsp143I	GATC	3 cut(s)	208, 523, 697
Bsp1720I	GCTNAGC	1 cut(s)	345
BspCNI	CTCAG	2 cut(s)	337, 382
BspDI	ATCGAT	1 cut(s)	353
BspLI	GGNNCC	1 cut(s)	12
BssMI	GATC	3 cut(s)	208, 523, 697
Bst2UI	CCWGG	1 cut(s)	594
Bst4CI	ACNGT	2 cut(s)	370, 666
Bst6I	CTCTTC	3 cut(s)	74, 144, 226
BstDEI	CTNAG	2 cut(s)	345, 390
BstEII	GGTNACC	1 cut(s)	249
BstKTI	GATC	3 cut(s)	211, 526, 700
BstMAI	GTCTC	2 cut(s)	311, 618
BstMBI	GATC	3 cut(s)	208, 523, 697
BstNI	CCWGG	1 cut(s)	594
BstNSI	RCATGY	1 cut(s)	344
BstPI	GGTNACC	1 cut(s)	249
BstSCI	CCNGG	1 cut(s)	592
BstV1I	GCAGC	2 cut(s)	278, 715
BstV2I	GAAGAC	1 cut(s)	162
Bsu15I	ATCGAT	1 cut(s)	353
BsuTUI	ATCGAT	1 cut(s)	353
BtsIMutI	CAGTG	1 cut(s)	387
ClaI	ATCGAT	1 cut(s)	353
CviAII	CATG	3 cut(s)	7, 341, 692
CviJI	RGCY	5 cut(s)	13, 349, 422, 455, 610
CviKI_1	RGCY	5 cut(s)	13, 349, 422, 455, 610
DdeI	CTNAG	2 cut(s)	345, 390
DpnI	GATC	3 cut(s)	210, 525, 699
DpnII	GATC	3 cut(s)	208, 523, 697
DraIII	CACNNNGTG	1 cut(s)	263
DrdI	GACNNNNNNGTC	1 cut(s)	116
DseDI	GACNNNNNNGTC	1 cut(s)	116
Eam1104I	CTCTTC	3 cut(s)	74, 144, 226
EarI	CTCTTC	3 cut(s)	74, 144, 226
Eco24I	GRGCYC	1 cut(s)	15
Eco91I	GGTNACC	1 cut(s)	249
EcoO65I	GGTNACC	1 cut(s)	249
EcoRII	CCWGG	1 cut(s)	592
EcoT38I	GRGCYC	1 cut(s)	15
FaeI	CATG	3 cut(s)	10, 344, 695
FaiI	YATR	6 cut(s)	8, 180, 342, 441, 693, 730
FatI	CATG	3 cut(s)	6, 340, 691
Fnu4HI	GCNGC	2 cut(s)	267, 704
FriOI	GRGCYC	1 cut(s)	15
Fsp4HI	GCNGC	2 cut(s)	267, 704
GluI	GCNGC	2 cut(s)	267, 704
Hin1II	CATG	3 cut(s)	10, 344, 695
HindIII	AAGCTT	1 cut(s)	453
HinfI	GANTC	6 cut(s)	61, 172, 319, 392, 463, 631
HphI	GGTGA	2 cut(s)	206, 326
Hpy188I	TCNGA	3 cut(s)	171, 310, 528
Hpy188III	TCNNGA	4 cut(s)	54, 65, 323, 563
HpyAV	CCTTC	3 cut(s)	133, 178, 221
HpyCH4III	ACNGT	2 cut(s)	370, 666
HpyCH4V	TGCA	2 cut(s)	266, 713
HpyF3I	CTNAG	2 cut(s)	345, 390
Hsp92II	CATG	3 cut(s)	10, 344, 695
Kzo9I	GATC	3 cut(s)	208, 523, 697
LmnI	GCTCC	1 cut(s)	10
LpnPI	CCDG	7 cut(s)	50, 486, 576, 579, 606, 623, 655
Lsp1109I	GCAGC	2 cut(s)	278, 715
MaeIII	GTNAC	3 cut(s)	212, 249, 299
MalI	GATC	3 cut(s)	210, 525, 699
MboI	GATC	3 cut(s)	208, 523, 697
MfeI	CAATTG	1 cut(s)	281
MhlI	GDGCHC	1 cut(s)	15
MluCI	AATT	6 cut(s)	165, 281, 293, 529, 537, 602
MlyI	GAGTC	3 cut(s)	313, 401, 457
MseI	TTAA	4 cut(s)	44, 99, 219, 605
MslI	CAYNNNNRTG	1 cut(s)	690
MspR9I	CCNGG	1 cut(s)	594
MunI	CAATTG	1 cut(s)	281
MvaI	CCWGG	1 cut(s)	594
NdeII	GATC	3 cut(s)	208, 523, 697
NlaIII	CATG	3 cut(s)	10, 344, 695
NlaIV	GGNNCC	1 cut(s)	12
NmuCI	GTSAC	2 cut(s)	212, 299
NspI	RCATGY	1 cut(s)	344
PfeI	GAWTC	3 cut(s)	61, 172, 631
PflMI	CCANNNNNTGG	1 cut(s)	569
PkrI	GCNGC	2 cut(s)	268, 705
PleI	GAGTC	3 cut(s)	313, 400, 457
PpsI	GAGTC	3 cut(s)	313, 400, 457
Psp6I	CCWGG	1 cut(s)	592
PspEI	GGTNACC	1 cut(s)	249
PspGI	CCWGG	1 cut(s)	592
PspN4I	GGNNCC	1 cut(s)	12
RseI	CAYNNNNRTG	1 cut(s)	690
SaqAI	TTAA	4 cut(s)	44, 99, 219, 605
SatI	GCNGC	2 cut(s)	267, 704
Sau3AI	GATC	3 cut(s)	208, 523, 697
SchI	GAGTC	3 cut(s)	313, 401, 457
ScrFI	CCNGG	1 cut(s)	594
SduI	GDGCHC	1 cut(s)	15
SmiMI	CAYNNNNRTG	1 cut(s)	690
SmlI	CTYRAG	1 cut(s)	615
SmoI	CTYRAG	1 cut(s)	615
Sse9I	AATT	6 cut(s)	165, 281, 293, 529, 537, 602
StyD4I	CCNGG	1 cut(s)	592
TaaI	ACNGT	2 cut(s)	370, 666
TaqI	TCGA	2 cut(s)	108, 353
TasI	AATT	6 cut(s)	165, 281, 293, 529, 537, 602
TfiI	GAWTC	3 cut(s)	61, 172, 631
Tru1I	TTAA	4 cut(s)	44, 99, 219, 605
Tru9I	TTAA	4 cut(s)	44, 99, 219, 605
TscAI	CASTG	1 cut(s)	394
TseFI	GTSAC	2 cut(s)	212, 299
TseI	GCWGC	2 cut(s)	266, 703
Tsp45I	GTSAC	2 cut(s)	212, 299
TspDTI	ATGAA	5 cut(s)	162, 510, 668, 708, 717
TspGWI	ACGGA	1 cut(s)	549
TspRI	CASTG	1 cut(s)	394
Van91I	CCANNNNNTGG	1 cut(s)	569
XapI	RAATTY	1 cut(s)	165
XceI	RCATGY	1 cut(s)	344

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.