Rh4BG084800
TCP Family

Transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
OG0007792
Physical Location & Seq
Reverse (-)
14631948 .. 14634099
2152 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4BG084800.1

Sequence Viewer

Length: 840 bp
ATGTCTAATTCCGAGGCCCCGAATAACGAGCTCTCCAATGGAGCAGCAGCTATCATGATGGAAAGACAGCAGCAGCAACAACAGCAGCAACAGACCCAACAGACGGCTGCATCTAACGGCGTCTTGGCCGTCAAGAAGCCGCCGTCAAAGGACCGACACAGCAAGGTCGACGGCCGGGGCCGACGCATCCGCATGCCCATCATCTGCGCCGCACGTGTCTTCCAGCTCACACGTGAGCTCGGCCACAAGTCCGACGGCCAGACCATCGAGTGGCTCCTCCGCCAGGCCGAGCCCTCCATCATCGCCGCCACCGGCACCGGCACTACTCCCGCTAGCTTCTCCACCGTCTCCGTCTCCCTCCGCGGCGGAGCCTCCTCCGGCGCCGCCTCCCTCTCCAACTCCTCCACTACTTCCTCCAACGACCACAAGCCCCTCCTCGGCGGCCCCACCCCCTTCATCCTCGGCAAGCGCATGCGCACCGACGACGACGCCAAGGACGCCGACGCCCACCACGGCGCCACCGACGGAGCAGGACCAGGAGCAGTCTCGGTCGTCGGTCACCACTCCATGAGCTCCATGCTGGGCTCCGCCGCCGCCCAGGGAGGGTTCTGGGCGCCGCACTACGGACAAGTCTGGAGCTTCGCCGCCACGCCGCCGCCGGAAATGATGACTCAGCAGCAGTCGGTCTCCCAACAGCATTCTTTGTTCTTGCCGCAGCAGCCGATGGGGGAAGCCTCGGCGGCCAGAGTGGGAAATTACCTTCCGGGACATCTCAATTTGTTGGCTTCTTTGTCGGGCGGGCACGGCAATTCGGGTCGGAGAGAAGACGACCCGCGTTAA

Protein Analysis

279

Amino Acids

29.34

Weight (kDa)

9.2

Isoelectric Point (pI)

43.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TCP PF03634 49 - 133 3.1e-29 TCP family transcription factor
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 476
AccB1I GGYRCC 4 cut(s) 314, 380, 515, 613
AccB7I CCANNNNNTGG 1 cut(s) 270
AccI GTMKAC 1 cut(s) 168
AccII CGCG 2 cut(s) 363, 835
AcoI YGGCCR 5 cut(s) 126, 172, 241, 256, 741
AcvI CACGTG 2 cut(s) 215, 233
AcyI GRCGYC 7 cut(s) 120, 381, 489, 498, 504, 516, 614
AfiI CCNNNNNNNGG 6 cut(s) 103, 270, 283, 437, 603, 623
AflIII ACRYGT 2 cut(s) 214, 230
AjnI CCWGG 3 cut(s) 282, 535, 597
AluBI AGCT 7 cut(s) 31, 50, 226, 238, 336, 573, 639
AluI AGCT 7 cut(s) 31, 50, 226, 238, 336, 573, 639
Alw21I GWGCWC 3 cut(s) 33, 240, 575
Alw26I GTCTC 4 cut(s) 352, 358, 550, 691
AoxI GGCC 9 cut(s) 15, 126, 172, 178, 241, 256, 285, 442, 741
ApeKI GCWGC 9 cut(s) 44, 47, 70, 73, 85, 107, 676, 715, 718
AspLEI GCGC 6 cut(s) 209, 383, 471, 477, 518, 616
AspS9I GGNCC 5 cut(s) 16, 151, 178, 443, 533
AsuC2I CCSGG 2 cut(s) 176, 765
AsuHPI GGTGA 1 cut(s) 551
AsuNHI GCTAGC 1 cut(s) 332
AvaII GGWCC 2 cut(s) 151, 533
BaeGI GKGCMC 1 cut(s) 804
BanI GGYRCC 4 cut(s) 314, 380, 515, 613
BanII GRGCYC 5 cut(s) 33, 240, 294, 575, 587
BbrPI CACGTG 2 cut(s) 215, 233
BbsI GAAGAC 2 cut(s) 211, 831
Bbv12I GWGCWC 3 cut(s) 33, 240, 575
BbvI GCAGC 9 cut(s) 56, 59, 82, 85, 94, 97, 688, 727, 730
BccI CCATC 5 cut(s) 52, 206, 272, 305, 718
BceAI ACGGC 8 cut(s) 113, 120, 127, 133, 187, 271, 529, 820
BciT130I CCWGG 3 cut(s) 284, 537, 599
BcnI CCSGG 2 cut(s) 176, 765
BcoDI GTCTC 4 cut(s) 352, 358, 550, 691
BfaI CTAG 1 cut(s) 333
BfoI RGCGCY 3 cut(s) 384, 519, 617
BglI GCCNNNNNGGC 1 cut(s) 740
Bme1390I CCNGG 5 cut(s) 176, 284, 537, 599, 765
Bme18I GGWCC 2 cut(s) 151, 533
BmgT120I GGNCC 5 cut(s) 16, 151, 178, 443, 533
BmrFI CCNGG 5 cut(s) 176, 284, 537, 599, 765
BmsI GCATC 2 cut(s) 119, 195
BmtI GCTAGC 1 cut(s) 336
BpiI GAAGAC 2 cut(s) 211, 831
BpmI CTGGAG 1 cut(s) 655
BpuMI CCSGG 2 cut(s) 176, 765
BsaAI YACGTR 2 cut(s) 215, 233
BsaHI GRCGYC 7 cut(s) 120, 381, 489, 498, 504, 516, 614
BsaI GGTCTC 1 cut(s) 691
BsaXI ACNNNNNCTCC 2 cut(s) 17, 47
Bsc4I CCNNNNNNNGG 6 cut(s) 103, 270, 283, 437, 603, 623
Bse118I RCCGGY 2 cut(s) 311, 317
BseBI CCWGG 3 cut(s) 284, 537, 599
BseGI GGATG 2 cut(s) 186, 456
BseLI CCNNNNNNNGG 6 cut(s) 103, 270, 283, 437, 603, 623
BseMII CTCAG 1 cut(s) 686
BseRI GAGGAG 4 cut(s) 266, 364, 391, 425
BseSI GKGCMC 1 cut(s) 804
BseX3I CGGCCG 1 cut(s) 172
BseXI GCAGC 9 cut(s) 56, 59, 82, 85, 94, 97, 688, 727, 730
BseYI CCCAGC 1 cut(s) 580
Bsh1236I CGCG 2 cut(s) 363, 835
Bsh1285I CGRYCG 2 cut(s) 175, 552
BshFI GGCC 9 cut(s) 17, 128, 174, 180, 243, 258, 287, 444, 743
BshNI GGYRCC 4 cut(s) 314, 380, 515, 613
BsiEI CGRYCG 2 cut(s) 175, 552
BsiHKAI GWGCWC 3 cut(s) 33, 240, 575
BsiSI CCGG 6 cut(s) 175, 312, 318, 378, 659, 764
BslFI GGGAC 1 cut(s) 780
BslI CCNNNNNNNGG 6 cut(s) 103, 270, 283, 437, 603, 623
BsmAI GTCTC 4 cut(s) 352, 358, 550, 691
BsmBI CGTCTC 2 cut(s) 352, 358
BsmFI GGGAC 1 cut(s) 780
BsmI GAATGC 1 cut(s) 697
BsnI GGCC 9 cut(s) 17, 128, 174, 180, 243, 258, 287, 444, 743
Bso31I GGTCTC 1 cut(s) 691
Bsp1286I GDGCHC 6 cut(s) 33, 240, 294, 575, 587, 804
BspANI GGCC 9 cut(s) 17, 128, 174, 180, 243, 258, 287, 444, 743
BspCNI CTCAG 1 cut(s) 685
BspFNI CGCG 2 cut(s) 363, 835
BspHI TCATGA 1 cut(s) 54
BspOI GCTAGC 1 cut(s) 336
BspT107I GGYRCC 4 cut(s) 314, 380, 515, 613
BspTNI GGTCTC 1 cut(s) 691
BsrFI RCCGGY 2 cut(s) 311, 317
BssAI RCCGGY 2 cut(s) 311, 317
BssNI GRCGYC 7 cut(s) 120, 381, 489, 498, 504, 516, 614
BssT1I CCWWGG 1 cut(s) 492
Bst2UI CCWGG 3 cut(s) 284, 537, 599
Bst4CI ACNGT 1 cut(s) 346
BstACI GRCGYC 7 cut(s) 120, 381, 489, 498, 504, 516, 614
BstBAI YACGTR 2 cut(s) 215, 233
BstC8I GCNNGC 5 cut(s) 194, 334, 467, 473, 800
BstDEI CTNAG 1 cut(s) 672
BstDSI CCRYGG 2 cut(s) 361, 511
BstEII GGTNACC 1 cut(s) 557
BstENI CCTNNNNNAGG 1 cut(s) 281
BstF5I GGATG 2 cut(s) 186, 456
BstFNI CGCG 2 cut(s) 363, 835
BstH2I RGCGCY 3 cut(s) 384, 519, 617
BstHHI GCGC 6 cut(s) 209, 383, 471, 477, 518, 616
BstMAI GTCTC 4 cut(s) 352, 358, 550, 691
BstMCI CGRYCG 2 cut(s) 175, 552
BstMWI GCNNNNNNNGC 5 cut(s) 82, 497, 718, 740, 804
BstNI CCWGG 3 cut(s) 284, 537, 599
BstNSI RCATGY 2 cut(s) 196, 475
BstPI GGTNACC 1 cut(s) 557
BstSCI CCNGG 5 cut(s) 174, 282, 535, 597, 763
BstSLI GKGCMC 1 cut(s) 804
BstUI CGCG 2 cut(s) 363, 835
BstV1I GCAGC 9 cut(s) 56, 59, 82, 85, 94, 97, 688, 727, 730
BstV2I GAAGAC 2 cut(s) 211, 831
BstZI CGGCCG 1 cut(s) 172
BsuRI GGCC 9 cut(s) 17, 128, 174, 180, 243, 258, 287, 444, 743
BtgI CCRYGG 2 cut(s) 361, 511
BtgZI GCGATG 1 cut(s) 286
BtsCI GGATG 2 cut(s) 186, 456
Cac8I GCNNGC 5 cut(s) 194, 334, 467, 473, 800
CciI TCATGA 1 cut(s) 54
CfoI GCGC 6 cut(s) 209, 383, 471, 477, 518, 616
Cfr10I RCCGGY 2 cut(s) 311, 317
Cfr13I GGNCC 5 cut(s) 16, 151, 178, 443, 533
Cfr42I CCGCGG 1 cut(s) 364
CseI GACGC 5 cut(s) 109, 192, 497, 506, 512
CviAII CATG 5 cut(s) 55, 193, 472, 568, 577
DdeI CTNAG 1 cut(s) 672
DinI GGCGCC 3 cut(s) 382, 517, 615
EaeI YGGCCR 5 cut(s) 126, 172, 241, 256, 741
EagI CGGCCG 1 cut(s) 172
EciI GGCGGA 3 cut(s) 269, 381, 577
Ecl136II GAGCTC 3 cut(s) 31, 238, 573
EclXI CGGCCG 1 cut(s) 172
Eco130I CCWWGG 1 cut(s) 492
Eco24I GRGCYC 5 cut(s) 33, 240, 294, 575, 587
Eco31I GGTCTC 1 cut(s) 691
Eco47I GGWCC 2 cut(s) 151, 533
Eco52I CGGCCG 1 cut(s) 172
Eco53kI GAGCTC 3 cut(s) 31, 238, 573
Eco72I CACGTG 2 cut(s) 215, 233
Eco91I GGTNACC 1 cut(s) 557
EcoICRI GAGCTC 3 cut(s) 31, 238, 573
EcoNI CCTNNNNNAGG 1 cut(s) 281
EcoO109I RGGNCCY 1 cut(s) 16
EcoO65I GGTNACC 1 cut(s) 557
EcoRII CCWGG 3 cut(s) 282, 535, 597
EcoT14I CCWWGG 1 cut(s) 492
EcoT38I GRGCYC 5 cut(s) 33, 240, 294, 575, 587
EgeI GGCGCC 3 cut(s) 382, 517, 615
EheI GGCGCC 3 cut(s) 382, 517, 615
ErhI CCWWGG 1 cut(s) 492
Esp3I CGTCTC 2 cut(s) 352, 358
FaeI CATG 5 cut(s) 58, 196, 475, 571, 580
FaiI YATR 5 cut(s) 56, 194, 473, 569, 578
FaqI GGGAC 1 cut(s) 780
FatI CATG 5 cut(s) 54, 192, 471, 567, 576
FauI CCCGC 2 cut(s) 337, 791
FblI GTMKAC 1 cut(s) 168
FokI GGATG 2 cut(s) 173, 443
FriOI GRGCYC 5 cut(s) 33, 240, 294, 575, 587
FspAI RTGCGCAY 1 cut(s) 476
FspBI CTAG 1 cut(s) 333
FspI TGCGCA 1 cut(s) 476
GlaI GCGC 6 cut(s) 208, 382, 470, 476, 517, 615
GsaI CCCAGC 1 cut(s) 584
GsuI CTGGAG 1 cut(s) 655
HaeII RGCGCY 3 cut(s) 384, 519, 617
HaeIII GGCC 9 cut(s) 17, 128, 174, 180, 243, 258, 287, 444, 743
HapII CCGG 6 cut(s) 175, 312, 318, 378, 659, 764
HgaI GACGC 5 cut(s) 109, 192, 497, 506, 512
HhaI GCGC 6 cut(s) 209, 383, 471, 477, 518, 616
Hin1I GRCGYC 7 cut(s) 120, 381, 489, 498, 504, 516, 614
Hin1II CATG 5 cut(s) 58, 196, 475, 571, 580
Hin6I GCGC 6 cut(s) 207, 381, 469, 475, 516, 614
HinP1I GCGC 6 cut(s) 207, 381, 469, 475, 516, 614
HincII GTYRAC 1 cut(s) 169
HindII GTYRAC 1 cut(s) 169
HinfI GANTC 1 cut(s) 670
HpaII CCGG 6 cut(s) 175, 312, 318, 378, 659, 764
HphI GGTGA 1 cut(s) 551
Hpy166II GTNNAC 1 cut(s) 169
Hpy188I TCNGA 3 cut(s) 13, 253, 819
Hpy188III TCNNGA 3 cut(s) 55, 133, 634
Hpy8I GTNNAC 1 cut(s) 169
Hpy99I CGWCG 9 cut(s) 173, 186, 257, 485, 488, 491, 506, 527, 557
HpyAV CCTTC 2 cut(s) 463, 770
HpyCH4III ACNGT 1 cut(s) 346
HpyCH4IV ACGT 2 cut(s) 214, 232
HpyCH4V TGCA 1 cut(s) 110
HpyF10VI GCNNNNNNNGC 5 cut(s) 82, 497, 718, 740, 804
HpyF3I CTNAG 1 cut(s) 672
HpySE526I ACGT 2 cut(s) 214, 232
Hsp92I GRCGYC 7 cut(s) 120, 381, 489, 498, 504, 516, 614
Hsp92II CATG 5 cut(s) 58, 196, 475, 571, 580
HspAI GCGC 6 cut(s) 207, 381, 469, 475, 516, 614
KasI GGCGCC 3 cut(s) 380, 515, 613
KspI CCGCGG 1 cut(s) 364
LmnI GCTCC 8 cut(s) 41, 279, 368, 527, 539, 578, 590, 636
Lsp1109I GCAGC 9 cut(s) 56, 59, 82, 85, 94, 97, 688, 727, 730
LweI GCATC 2 cut(s) 119, 195
MaeI CTAG 1 cut(s) 333
MaeII ACGT 2 cut(s) 214, 232
MaeIII GTNAC 1 cut(s) 557
MboII GAAGA 2 cut(s) 211, 836
MhlI GDGCHC 6 cut(s) 33, 240, 294, 575, 587, 804
MluCI AATT 4 cut(s) 7, 754, 775, 808
Mly113I GGCGCC 3 cut(s) 381, 516, 614
MlyI GAGTC 1 cut(s) 664
MmeI TCCRAC 4 cut(s) 276, 420, 441, 797
MseI TTAA 1 cut(s) 838
MslI CAYNNNNRTG 1 cut(s) 191
MspA1I CMGCKG 1 cut(s) 363
MspI CCGG 6 cut(s) 175, 312, 318, 378, 659, 764
MspR9I CCNGG 5 cut(s) 176, 284, 537, 599, 765
Mva1269I GAATGC 1 cut(s) 697
MvaI CCWGG 3 cut(s) 284, 537, 599
MvnI CGCG 2 cut(s) 363, 835
MwoI GCNNNNNNNGC 5 cut(s) 82, 497, 718, 740, 804
NarI GGCGCC 3 cut(s) 381, 516, 614
NciI CCSGG 2 cut(s) 176, 765
NheI GCTAGC 1 cut(s) 332
NlaIII CATG 5 cut(s) 58, 196, 475, 571, 580
NmeAIII GCCGAG 5 cut(s) 219, 313, 417, 441, 716
NmuCI GTSAC 1 cut(s) 557
NsbI TGCGCA 1 cut(s) 476
NspI RCATGY 2 cut(s) 196, 475
PaeI GCATGC 2 cut(s) 196, 475
PagI TCATGA 1 cut(s) 54
PasI CCCWGGG 1 cut(s) 598
PcsI WCGNNNNNNNCGW 1 cut(s) 519
PctI GAATGC 1 cut(s) 697
PflMI CCANNNNNTGG 1 cut(s) 270
PfoI TCCNGGA 1 cut(s) 763
PleI GAGTC 1 cut(s) 664
PluTI GGCGCC 3 cut(s) 384, 519, 617
PmaCI CACGTG 2 cut(s) 215, 233
PmlI CACGTG 2 cut(s) 215, 233
PpsI GAGTC 1 cut(s) 664
Ppu21I YACGTR 2 cut(s) 215, 233
Psp124BI GAGCTC 3 cut(s) 33, 240, 575
Psp6I CCWGG 3 cut(s) 282, 535, 597
PspCI CACGTG 2 cut(s) 215, 233
PspEI GGTNACC 1 cut(s) 557
PspFI CCCAGC 1 cut(s) 580
PspGI CCWGG 3 cut(s) 282, 535, 597
PspPI GGNCC 5 cut(s) 16, 151, 178, 443, 533
RseI CAYNNNNRTG 1 cut(s) 191
SacI GAGCTC 3 cut(s) 33, 240, 575
SacII CCGCGG 1 cut(s) 364
SalI GTCGAC 1 cut(s) 167
SaqAI TTAA 1 cut(s) 838
Sau96I GGNCC 5 cut(s) 16, 151, 178, 443, 533
SchI GAGTC 1 cut(s) 664
ScrFI CCNGG 5 cut(s) 176, 284, 537, 599, 765
SduI GDGCHC 6 cut(s) 33, 240, 294, 575, 587, 804
SfaNI GCATC 2 cut(s) 119, 195
SfoI GGCGCC 3 cut(s) 382, 517, 615
Sfr303I CCGCGG 1 cut(s) 364
SgrBI CCGCGG 1 cut(s) 364
SinI GGWCC 2 cut(s) 151, 533
SmiMI CAYNNNNRTG 1 cut(s) 191
SphI GCATGC 2 cut(s) 196, 475
Sse9I AATT 4 cut(s) 7, 754, 775, 808
SspDI GGCGCC 3 cut(s) 380, 515, 613
SspMI CTAG 1 cut(s) 333
SstI GAGCTC 3 cut(s) 33, 240, 575
StyD4I CCNGG 5 cut(s) 174, 282, 535, 597, 763
StyI CCWWGG 1 cut(s) 492
TaaI ACNGT 1 cut(s) 346
TaiI ACGT 2 cut(s) 217, 235
TaqI TCGA 2 cut(s) 168, 267
TaqII GACCGA 4 cut(s) 168, 538, 545, 673
TasI AATT 4 cut(s) 7, 754, 775, 808
Tru1I TTAA 1 cut(s) 838
Tru9I TTAA 1 cut(s) 838
TseFI GTSAC 1 cut(s) 557
TseI GCWGC 9 cut(s) 44, 47, 70, 73, 85, 107, 676, 715, 718
Tsp45I GTSAC 1 cut(s) 557
TspDTI ATGAA 1 cut(s) 445
TspGWI ACGGA 3 cut(s) 340, 540, 639
Van91I CCANNNNNTGG 1 cut(s) 270
VpaK11BI GGWCC 2 cut(s) 151, 533
XagI CCTNNNNNAGG 1 cut(s) 281
XceI RCATGY 2 cut(s) 196, 475
XmiI GTMKAC 1 cut(s) 168
XspI CTAG 1 cut(s) 333
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.