Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0003116

Physical Location & Seq

Genomic Coordinates Reverse (-)

16913994 .. 16917053

Gene Structure 3060 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G44800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1113 bp

ATGAAAGGTGGAAGCATGGAGAAAATTAAGCCGATATTGGCGATAATTTCACTGCAATTTGGGTATGCAGGCATGTACATCATCACCATGGTCTCGTTCAAACATGGCATGGACCATTGGGTTCTTGCTACATACCGTCATGTCGTAGCCACGGTTGTCATGGCTCCCTTTGCTCTCATGTTCGAGAGGAAAATTAGGCCCAAGATGACACTAGCAATATTCTGGAGGCTTCTTGCTCTTGGAATATTAGAGCCCCTCATGGACCAGAATTTGTACTACATAGGATTGAAAAACACATCAGCATCGTACACTTCTGCCTTTACCAATGCACTTCCCGCCGTCACCTTCATTCTCGCCCTCATTTTCAGGCTTGAGACGGTGAACTTTAGAAAGGTCCACAGTGTTGCAAAAGTGGTAGGAACGGTAATAACGGTTGGAGGAGCAATGATCATGACTTTGTACAAAGGTCCGGCCATTGAGATTGTGAAGGCCGCACATAATTCTTTCCACGGTGGTTCGAGCAGCACACCCACCGGCCAACATTGGGTCCTTGGAACCATAGCCATTATGGGCAGTATCTCTACATGGGCTGCTTTCTTCATTTTACAGTCATACACATTAAAAGTCTATCCAGCTGAGCTATCACTAGTAACGTTGATATGTGGGATAGGGACGATCCTAAACGCTATTGCTTCGCTAATAATGGTTCGTGACCCGAGTGCATGGAAAATCGGCATGGATTCAGGGACACTCGCCGCGGTTTACTCTGGAGTGGTTTGTTCGGGAATAGCTTATTACATACAAAGCATTGTGATTAAGCAACGTGGACCGGTTTTTACGACGTCGTTTAGTCCTATGTGTATGATCATCACTGCCTTCCTCGGTGCATTGGTTTTGGCTGAGAAAATCCATCTCGGAAGCATAATCGGGGCGGTTTTCATAGTGCTTGGACTATACAGTGTGGTATGGGGTAAAAGTAAAGACGAAGTGAATCCTTTGGATGAGAAAATCGTAGCCAAGTCCCAAGAGCTTCCGATTACTAACGTAGTCAAACAAACGAACGGTCACGATGTCTCGGGAGCACCGACTAACGGTGTGGTTACCAGTACCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003333 GO:0003674 GO:0005215 GO:0005342 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0005887 GO:0005938 GO:0006810 GO:0006811 GO:0006820 GO:0006865 GO:0007154 GO:0007165 GO:0008150 GO:0008509 GO:0008514 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009755 GO:0009987 GO:0010033 GO:0015075 GO:0015171 GO:0015179 GO:0015318 GO:0015562 GO:0015711 GO:0015807 GO:0015849 GO:0016020 GO:0016021 GO:0022857 GO:0023052 GO:0031224 GO:0031226 GO:0032870 GO:0032973 GO:0034220 GO:0034639 GO:0042221 GO:0042592 GO:0043090 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0046942 GO:0046943 GO:0048878 GO:0050789 GO:0050794 GO:0050801 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0055081 GO:0055085 GO:0065007 GO:0065008 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0071702 GO:0071705 GO:0071944 GO:0080144 GO:0098656 GO:0099568 GO:0140115 GO:1902475 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EamA

Protein Analysis

370

Amino Acids

39.95

Weight (kDa)

9.48

Isoelectric Point (pI)

19.92

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EamA	PF00892	12 - 147	2e-13	EamA-like transporter family
EamA	PF00892	184 - 322	7.3e-11	EamA-like transporter family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003116)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G21890 AT1G21890 AT1G44800 AT4G08300
fragaria_vesca	FvH4_2g26691 FvH4_2g26691 FvH4_2g26691 FvH4_2g26700
malus_domestica	MD00G1157200.v1.1 MD15G1351700.v1.1 MD15G1351800.v1.1
prunus_persica	Prupe.1G500400_v2.0.a1 Prupe.1G500400_v2.0.a1 Prupe.1G500500_v2.0.a1
pyrus_communis	pycom08g14190 pycom15g31510
rosa_chinensis	RchiOBHm_Chr6g0295541 RchiOBHm_Chr6g0295571
rosa_laevigata	RLG00000011789 RLG00000011792
rosa_multiflora	Rmu_sc0005000.1_g000009 Rmu_sc0005000.1_g000012
rosa_roxburghii	Rroxscaffold_7G00172360 Rroxscaffold_7G00172380
rosa_rugosa	Rorug06G0251800 Rorug06G0251900 Rorug06G0252000 Rorug06G0252100
rosa_samantha	Rh6AG365000 Rh6AG365200 Rh6BG373400 Rh6CG379600 Rh6CG379800 Rh6DG366100 Rh6DG366400
rosa_wichuraiana	Rw6G031880 Rw6G031890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	845
AccII	CGCG	1 cut(s)	758
AciI	CCGC	5 cut(s)	336, 492, 756, 758, 932
AclI	AACGTT	1 cut(s)	653
AclWI	GGATC	1 cut(s)	670
AcoI	YGGCCR	2 cut(s)	471, 535
AcsI	RAATTY	1 cut(s)	268
AcyI	GRCGYC	1 cut(s)	842
AfaI	GTAC	5 cut(s)	77, 275, 308, 461, 1108
AfiI	CCNNNNNNNGG	2 cut(s)	544, 1091
AgeI	ACCGGT	1 cut(s)	829
AgsI	TTSAA	2 cut(s)	100, 289
AhlI	ACTAGT	1 cut(s)	646
AluBI	AGCT	4 cut(s)	635, 640, 791, 1030
AluI	AGCT	4 cut(s)	635, 640, 791, 1030
Alw21I	GWGCWC	1 cut(s)	1084
Alw26I	GTCTC	3 cut(s)	97, 368, 1078
AlwI	GGATC	1 cut(s)	670
AlwNI	CAGNNNCTG	1 cut(s)	1110
Ama87I	CYCGRG	2 cut(s)	715, 1075
AoxI	GGCC	4 cut(s)	197, 471, 489, 535
ApeKI	GCWGC	2 cut(s)	522, 590
ApoI	RAATTY	1 cut(s)	268
ArsI	GACNNNNNNTTYG	2 cut(s)	1048, 1080
AsiGI	ACCGGT	1 cut(s)	829
AspS9I	GGNCC	7 cut(s)	112, 198, 262, 394, 467, 547, 827
AsuHPI	GGTGA	3 cut(s)	76, 334, 391
AvaI	CYCGRG	2 cut(s)	715, 1075
AvaII	GGWCC	6 cut(s)	112, 262, 394, 467, 547, 827
BanII	GRGCYC	1 cut(s)	255
Bbv12I	GWGCWC	1 cut(s)	1084
BbvI	GCAGC	2 cut(s)	534, 577
BccI	CCATC	1 cut(s)	918
BceAI	ACGGC	1 cut(s)	323
BclI	TGATCA	2 cut(s)	447, 864
BcoDI	GTCTC	3 cut(s)	97, 368, 1078
BcuI	ACTAGT	1 cut(s)	646
BfaI	CTAG	2 cut(s)	212, 647
BisI	GCNGC	4 cut(s)	492, 523, 591, 756
BlpI	GCTNAGC	1 cut(s)	636
BlsI	GCNGC	4 cut(s)	493, 524, 592, 757
Bme18I	GGWCC	6 cut(s)	112, 262, 394, 467, 547, 827
BmeT110I	CYCGRG	2 cut(s)	715, 1075
BmgT120I	GGNCC	7 cut(s)	112, 198, 262, 394, 467, 547, 827
BmiI	GGNNCC	3 cut(s)	165, 548, 556
BmsI	GCATC	1 cut(s)	311
BpmI	CTGGAG	2 cut(s)	244, 789
Bpu1102I	GCTNAGC	1 cut(s)	636
BpuEI	CTTGAG	1 cut(s)	392
BsaHI	GRCGYC	1 cut(s)	842
BsaI	GGTCTC	1 cut(s)	97
BsaJI	CCNNGG	6 cut(s)	87, 150, 508, 550, 756, 880
BsaWI	WCCGGW	1 cut(s)	829
Bsc4I	CCNNNNNNNGG	2 cut(s)	544, 1091
Bse118I	RCCGGY	2 cut(s)	533, 829
Bse1I	ACTGG	1 cut(s)	1104
Bse3DI	GCAATG	1 cut(s)	450
BseDI	CCNNGG	6 cut(s)	87, 150, 508, 550, 756, 880
BseGI	GGATG	1 cut(s)	1006
BseLI	CCNNNNNNNGG	2 cut(s)	544, 1091
BseMI	GCAATG	1 cut(s)	450
BseMII	CTCAG	2 cut(s)	627, 891
BseNI	ACTGG	1 cut(s)	1104
BseRI	GAGGAG	1 cut(s)	453
BseXI	GCAGC	2 cut(s)	534, 577
Bsh1236I	CGCG	1 cut(s)	758
BshFI	GGCC	4 cut(s)	199, 473, 491, 537
BshTI	ACCGGT	1 cut(s)	829
BsiHKAI	GWGCWC	1 cut(s)	1084
BsiHKCI	CYCGRG	2 cut(s)	715, 1075
BsiSI	CCGG	3 cut(s)	470, 534, 830
BslFI	GGGAC	3 cut(s)	685, 760, 1006
BslI	CCNNNNNNNGG	2 cut(s)	544, 1091
BsmAI	GTCTC	3 cut(s)	97, 368, 1078
BsmBI	CGTCTC	1 cut(s)	368
BsmFI	GGGAC	3 cut(s)	685, 760, 1006
BsnI	GGCC	4 cut(s)	199, 473, 491, 537
Bso31I	GGTCTC	1 cut(s)	97
BsoBI	CYCGRG	2 cut(s)	715, 1075
Bsp1286I	GDGCHC	2 cut(s)	255, 1084
Bsp1407I	TGTACA	2 cut(s)	75, 459
Bsp143I	GATC	3 cut(s)	447, 675, 864
Bsp1720I	GCTNAGC	1 cut(s)	636
Bsp19I	CCATGG	1 cut(s)	87
BspACI	CCGC	5 cut(s)	336, 492, 756, 758, 932
BspANI	GGCC	4 cut(s)	199, 473, 491, 537
BspCNI	CTCAG	2 cut(s)	628, 892
BspFNI	CGCG	1 cut(s)	758
BspHI	TCATGA	1 cut(s)	450
BspLI	GGNNCC	3 cut(s)	165, 548, 556
BspPI	GGATC	1 cut(s)	670
BspTNI	GGTCTC	1 cut(s)	97
BsrDI	GCAATG	1 cut(s)	450
BsrFI	RCCGGY	2 cut(s)	533, 829
BsrGI	TGTACA	2 cut(s)	75, 459
BsrI	ACTGG	1 cut(s)	1104
BssAI	RCCGGY	2 cut(s)	533, 829
BssECI	CCNNGG	6 cut(s)	87, 150, 508, 550, 756, 880
BssMI	GATC	3 cut(s)	447, 675, 864
BssNI	GRCGYC	1 cut(s)	842
BssT1I	CCWWGG	2 cut(s)	87, 550
BstACI	GRCGYC	1 cut(s)	842
BstAUI	TGTACA	2 cut(s)	75, 459
BstC8I	GCNNGC	1 cut(s)	70
BstDEI	CTNAG	2 cut(s)	636, 900
BstDSI	CCRYGG	4 cut(s)	87, 150, 508, 756
BstEII	GGTNACC	1 cut(s)	1099
BstF5I	GGATG	1 cut(s)	1006
BstFNI	CGCG	1 cut(s)	758
BstKTI	GATC	3 cut(s)	450, 678, 867
BstMAI	GTCTC	3 cut(s)	97, 368, 1078
BstMBI	GATC	3 cut(s)	447, 675, 864
BstMWI	GCNNNNNNNGC	2 cut(s)	170, 335
BstNSI	RCATGY	1 cut(s)	76
BstPI	GGTNACC	1 cut(s)	1099
BstUI	CGCG	1 cut(s)	758
BstV1I	GCAGC	2 cut(s)	534, 577
BsuRI	GGCC	4 cut(s)	199, 473, 491, 537
BtgI	CCRYGG	4 cut(s)	87, 150, 508, 756
BtsCI	GGATG	1 cut(s)	1006
BtsI	GCAGTG	2 cut(s)	50, 870
BtsIMutI	CAGTG	4 cut(s)	50, 406, 870, 964
Cac8I	GCNNGC	1 cut(s)	70
CaiI	CAGNNNCTG	1 cut(s)	1110
CciI	TCATGA	1 cut(s)	450
Cfr10I	RCCGGY	2 cut(s)	533, 829
Cfr13I	GGNCC	7 cut(s)	112, 198, 262, 394, 467, 547, 827
Cfr42I	CCGCGG	1 cut(s)	759
Csp6I	GTAC	5 cut(s)	76, 274, 307, 460, 1107
CspAI	ACCGGT	1 cut(s)	829
CviQI	GTAC	5 cut(s)	76, 274, 307, 460, 1107
DdeI	CTNAG	2 cut(s)	636, 900
DpnI	GATC	3 cut(s)	449, 677, 866
DpnII	GATC	3 cut(s)	447, 675, 864
EaeI	YGGCCR	2 cut(s)	471, 535
Eco130I	CCWWGG	2 cut(s)	87, 550
Eco24I	GRGCYC	1 cut(s)	255
Eco31I	GGTCTC	1 cut(s)	97
Eco47I	GGWCC	6 cut(s)	112, 262, 394, 467, 547, 827
Eco88I	CYCGRG	2 cut(s)	715, 1075
Eco91I	GGTNACC	1 cut(s)	1099
EcoO109I	RGGNCCY	1 cut(s)	547
EcoO65I	GGTNACC	1 cut(s)	1099
EcoT14I	CCWWGG	2 cut(s)	87, 550
EcoT38I	GRGCYC	1 cut(s)	255
ErhI	CCWWGG	2 cut(s)	87, 550
Esp3I	CGTCTC	1 cut(s)	368
FaqI	GGGAC	3 cut(s)	685, 760, 1006
FauI	CCCGC	1 cut(s)	343
FbaI	TGATCA	2 cut(s)	447, 864
Fnu4HI	GCNGC	4 cut(s)	492, 523, 591, 756
FokI	GGATG	1 cut(s)	1013
FriOI	GRGCYC	1 cut(s)	255
Fsp4HI	GCNGC	4 cut(s)	492, 523, 591, 756
FspBI	CTAG	2 cut(s)	212, 647
GluI	GCNGC	4 cut(s)	492, 523, 591, 756
GsuI	CTGGAG	2 cut(s)	244, 789
HaeIII	GGCC	4 cut(s)	199, 473, 491, 537
HapII	CCGG	3 cut(s)	470, 534, 830
Hin1I	GRCGYC	1 cut(s)	842
HinfI	GANTC	2 cut(s)	740, 991
HpaII	CCGG	3 cut(s)	470, 534, 830
HphI	GGTGA	3 cut(s)	76, 334, 391
Hpy166II	GTNNAC	5 cut(s)	309, 382, 397, 763, 827
Hpy188I	TCNGA	2 cut(s)	917, 1035
Hpy188III	TCNNGA	8 cut(s)	184, 223, 451, 710, 768, 783, 1067, 1077
Hpy8I	GTNNAC	5 cut(s)	309, 382, 397, 763, 827
Hpy99I	CGWCG	2 cut(s)	844, 847
HpyAV	CCTTC	3 cut(s)	355, 481, 886
HpyCH4IV	ACGT	4 cut(s)	653, 823, 842, 1044
HpyCH4V	TGCA	6 cut(s)	55, 68, 329, 407, 722, 887
HpyF10VI	GCNNNNNNNGC	2 cut(s)	170, 335
HpyF3I	CTNAG	2 cut(s)	636, 900
HpySE526I	ACGT	4 cut(s)	653, 823, 842, 1044
Hsp92I	GRCGYC	1 cut(s)	842
Ksp22I	TGATCA	2 cut(s)	447, 864
KspI	CCGCGG	1 cut(s)	759
Kzo9I	GATC	3 cut(s)	447, 675, 864
LmnI	GCTCC	3 cut(s)	169, 440, 1079
Lsp1109I	GCAGC	2 cut(s)	534, 577
LweI	GCATC	1 cut(s)	311
MaeI	CTAG	2 cut(s)	212, 647
MaeII	ACGT	4 cut(s)	653, 823, 842, 1044
MaeIII	GTNAC	5 cut(s)	340, 649, 710, 1064, 1099
MalI	GATC	3 cut(s)	449, 677, 866
MboI	GATC	3 cut(s)	447, 675, 864
MboII	GAAGA	1 cut(s)	589
MhlI	GDGCHC	2 cut(s)	255, 1084
MluCI	AATT	6 cut(s)	24, 45, 56, 192, 268, 499
MmeI	TCCRAC	1 cut(s)	415
MnlI	CCTC	6 cut(s)	180, 219, 266, 368, 431, 890
MseI	TTAA	3 cut(s)	27, 620, 816
MslI	CAYNNNNRTG	1 cut(s)	86
MspA1I	CMGCKG	2 cut(s)	635, 758
MspI	CCGG	3 cut(s)	470, 534, 830
MvnI	CGCG	1 cut(s)	758
MwoI	GCNNNNNNNGC	2 cut(s)	170, 335
NcoI	CCATGG	1 cut(s)	87
NdeII	GATC	3 cut(s)	447, 675, 864
NlaIV	GGNNCC	3 cut(s)	165, 548, 556
NmuCI	GTSAC	3 cut(s)	340, 710, 1064
NspI	RCATGY	1 cut(s)	76
PagI	TCATGA	1 cut(s)	450
PcsI	WCGNNNNNNNCGW	1 cut(s)	1082
PfeI	GAWTC	2 cut(s)	740, 991
PinAI	ACCGGT	1 cut(s)	829
PkrI	GCNGC	4 cut(s)	493, 524, 592, 757
PpuMI	RGGWCCY	1 cut(s)	547
Psp1406I	AACGTT	1 cut(s)	653
Psp5II	RGGWCCY	1 cut(s)	547
PspEI	GGTNACC	1 cut(s)	1099
PspN4I	GGNNCC	3 cut(s)	165, 548, 556
PspPI	GGNCC	7 cut(s)	112, 198, 262, 394, 467, 547, 827
PspPPI	RGGWCCY	1 cut(s)	547
PstNI	CAGNNNCTG	1 cut(s)	1110
PvuII	CAGCTG	1 cut(s)	635
RsaI	GTAC	5 cut(s)	77, 275, 308, 461, 1108
RsaNI	GTAC	5 cut(s)	76, 274, 307, 460, 1107
RseI	CAYNNNNRTG	1 cut(s)	86
SacII	CCGCGG	1 cut(s)	759
SaqAI	TTAA	3 cut(s)	27, 620, 816
SatI	GCNGC	4 cut(s)	492, 523, 591, 756
Sau3AI	GATC	3 cut(s)	447, 675, 864
Sau96I	GGNCC	7 cut(s)	112, 198, 262, 394, 467, 547, 827
SduI	GDGCHC	2 cut(s)	255, 1084
SfaNI	GCATC	1 cut(s)	311
Sfr303I	CCGCGG	1 cut(s)	759
SgrBI	CCGCGG	1 cut(s)	759
SinI	GGWCC	6 cut(s)	112, 262, 394, 467, 547, 827
SmiMI	CAYNNNNRTG	1 cut(s)	86
SmlI	CTYRAG	1 cut(s)	371
SmoI	CTYRAG	1 cut(s)	371
SpeI	ACTAGT	1 cut(s)	646
Sse9I	AATT	6 cut(s)	24, 45, 56, 192, 268, 499
SsiI	CCGC	5 cut(s)	336, 492, 756, 758, 932
SspI	AATATT	2 cut(s)	219, 246
SspMI	CTAG	2 cut(s)	212, 647
StyI	CCWWGG	2 cut(s)	87, 550
TaiI	ACGT	4 cut(s)	656, 826, 845, 1047
TaqI	TCGA	2 cut(s)	183, 518
TasI	AATT	6 cut(s)	24, 45, 56, 192, 268, 499
TatI	WGTACW	3 cut(s)	75, 273, 459
TauI	GCSGC	2 cut(s)	494, 758
TfiI	GAWTC	2 cut(s)	740, 991
Tru1I	TTAA	3 cut(s)	27, 620, 816
Tru9I	TTAA	3 cut(s)	27, 620, 816
TscAI	CASTG	4 cut(s)	57, 406, 877, 964
TseFI	GTSAC	3 cut(s)	340, 710, 1064
TseI	GCWGC	2 cut(s)	522, 590
Tsp45I	GTSAC	3 cut(s)	340, 710, 1064
TspDTI	ATGAA	4 cut(s)	17, 337, 589, 928
TspRI	CASTG	4 cut(s)	57, 406, 877, 964
VpaK11BI	GGWCC	6 cut(s)	112, 262, 394, 467, 547, 827
XapI	RAATTY	1 cut(s)	268
XceI	RCATGY	1 cut(s)	76
XcmI	CCANNNNNNNNNTGG	2 cut(s)	157, 565
XspI	CTAG	2 cut(s)	212, 647
ZraI	GACGTC	1 cut(s)	843

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.