Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0003116

Physical Location & Seq

Genomic Coordinates Reverse (-)

41433476 .. 41436674

Gene Structure 3199 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G500500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1104 bp

ATGGGAGACCAAAGTCCAACAGGATCGAAGTTGAGTCCAGTTCTCATCAAGATCAAGCCTTACCTGGCTATGGTCTCCCTTCAATTTGGATATGCAGGCATGTATATCATCAGTATGGTCTCGTTTAAACACGGCATGAGCAACTTTGTTCTCTCAGTCTACCGTCATGTTGTTGCCTTTTGTGTTATTGCCCCCTTCGCCTTTGTTCTTGAAAGGAAAATAAGGCCAAGAATGACTCTCCCGATATTCCTGAGAATAGTTCTGCTTGGTTTTCTTGAGCCAGTTCTTGATCAAAACTTATACTTTCTGGGAATGAAGTACACCTCAGCAACATTTGCATCTGCTGTTGTCAACGTCCTTCCTGCCATCACCTTCATAATGGCAGTTTTTTTCAGGTTAGAGAGTGTGAACGTTAAGAAGCTACATAGCCTGGCAAAGGTGGTGGGAACTGTAATCACTGTTGGAGGAGCCATGGTGATGACACTGTACAAAGGCCCCATTGTGGATATCATACGAGGCCACGCACACAGCCACGGCACTAGCACCACCGACTCCACCAACCAGCATTGGGTGGCTGGCCCCTTGATGCTCTTAGCTAGTTGCGGTGGTTGGGCCAGTTTCTTCATCGTTCAATCATTTACTTTAAAGAAGTACCCAGCAGAGCTTTCTCTCACAGCTTGGATATGCATTATGGGAGTGTTGGAAGGTGGGGTAATAACATTTGCGGTGGAACGCAAAATGAGTGTTTGGGTTATAGGCTGGGATTCGAGGCTCCTTGCTTCAGTTTACTCTGGAATTGTTTGTTCTGGACTTGCATATTATGTGCAAGGTGTTGTGAGTAGGGAACGAGGCCCCGTTTTTGTAACAGCTTTCAGCCCTCTATGCATGATCATCACCGCCGCCCTAGGAGCCATCGTTTTAGCTGAAAAAGTCCACCTTGGAAGTATAATTGGAGCCATTTTCATAGTCTTCGGTCTCTACACTGTGGTATGGGGCAAAAGCAAAGACCCACTAGCCTCAAGCGCACCATTGAAAGATGAGAAAAGCAATAACCTTGAGTTGCCAGTGACGGCTGATCCCAATGGCATCAGTGGACGCACCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003333 GO:0003674 GO:0005215 GO:0005342 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0005887 GO:0005938 GO:0006810 GO:0006811 GO:0006820 GO:0006865 GO:0007154 GO:0007165 GO:0008150 GO:0008509 GO:0008514 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009755 GO:0009987 GO:0010033 GO:0015075 GO:0015171 GO:0015179 GO:0015318 GO:0015562 GO:0015711 GO:0015807 GO:0015849 GO:0016020 GO:0016021 GO:0022857 GO:0023052 GO:0031224 GO:0031226 GO:0032870 GO:0032973 GO:0034220 GO:0034639 GO:0042221 GO:0042592 GO:0043090 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0046942 GO:0046943 GO:0048878 GO:0050789 GO:0050794 GO:0050801 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0055081 GO:0055085 GO:0065007 GO:0065008 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0071702 GO:0071705 GO:0071944 GO:0080144 GO:0098656 GO:0099568 GO:0140115 GO:1902475 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EamA

Protein Analysis

368

Amino Acids

39.8

Weight (kDa)

9.5

Isoelectric Point (pI)

23.9

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003116)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G21890 AT1G21890 AT1G44800 AT4G08300
fragaria_vesca	FvH4_2g26691 FvH4_2g26691 FvH4_2g26691 FvH4_2g26700
malus_domestica	MD00G1157200.v1.1 MD15G1351700.v1.1 MD15G1351800.v1.1
prunus_persica	Prupe.1G500400_v2.0.a1 Prupe.1G500400_v2.0.a1 Prupe.1G500500_v2.0.a1
pyrus_communis	pycom08g14190 pycom15g31510
rosa_chinensis	RchiOBHm_Chr6g0295541 RchiOBHm_Chr6g0295571
rosa_laevigata	RLG00000011789 RLG00000011792
rosa_multiflora	Rmu_sc0005000.1_g000009 Rmu_sc0005000.1_g000012
rosa_roxburghii	Rroxscaffold_7G00172360 Rroxscaffold_7G00172380
rosa_rugosa	Rorug06G0251800 Rorug06G0251900 Rorug06G0252000 Rorug06G0252100
rosa_samantha	Rh6AG365000 Rh6AG365200 Rh6BG373400 Rh6CG379600 Rh6CG379800 Rh6DG366100 Rh6DG366400
rosa_wichuraiana	Rw6G031880 Rw6G031890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	159
AciI	CCGC	4 cut(s)	603, 725, 897, 900
AclI	AACGTT	1 cut(s)	411
AclWI	GGATC	2 cut(s)	31, 1070
AcuI	CTGAAG	1 cut(s)	765
AfaI	GTAC	3 cut(s)	320, 488, 653
AfiI	CCNNNNNNNGG	4 cut(s)	70, 436, 502, 568
AgsI	TTSAA	4 cut(s)	83, 212, 632, 1033
AjnI	CCWGG	2 cut(s)	63, 429
AluBI	AGCT	6 cut(s)	421, 596, 664, 677, 869, 923
AluI	AGCT	6 cut(s)	421, 596, 664, 677, 869, 923
Alw26I	GTCTC	3 cut(s)	79, 124, 980
AlwI	GGATC	2 cut(s)	31, 1070
AoxI	GGCC	6 cut(s)	224, 493, 517, 577, 612, 850
AspA2I	CCTAGG	1 cut(s)	904
AspLEI	GCGC	1 cut(s)	1025
AspS9I	GGNCC	4 cut(s)	494, 578, 612, 851
AsuHPI	GGTGA	3 cut(s)	361, 487, 886
AvrII	CCTAGG	1 cut(s)	904
BbsI	GAAGAC	1 cut(s)	961
BbvCI	CCTCAGC	1 cut(s)	325
BccI	CCATC	2 cut(s)	374, 920
BceAI	ACGGC	3 cut(s)	148, 550, 1086
BciT130I	CCWGG	2 cut(s)	65, 431
BclI	TGATCA	2 cut(s)	289, 888
BcoDI	GTCTC	3 cut(s)	79, 124, 980
BfaI	CTAG	4 cut(s)	540, 597, 905, 1013
BisI	GCNGC	1 cut(s)	900
BlnI	CCTAGG	1 cut(s)	904
BlsI	GCNGC	1 cut(s)	901
Bme1390I	CCNGG	2 cut(s)	65, 431
BmgT120I	GGNCC	4 cut(s)	494, 578, 612, 851
BmiI	GGNNCC	7 cut(s)	469, 496, 580, 773, 853, 910, 955
BmrFI	CCNGG	2 cut(s)	65, 431
BmsI	GCATC	3 cut(s)	347, 576, 1095
BoxI	GACNNNNGTC	1 cut(s)	12
BpiI	GAAGAC	1 cut(s)	961
Bpu10I	CCTNAGC	1 cut(s)	325
BpuEI	CTTGAG	3 cut(s)	296, 1003, 1076
BsaI	GGTCTC	3 cut(s)	79, 124, 980
BsaJI	CCNNGG	4 cut(s)	471, 532, 904, 937
BsaXI	ACNNNNNCTCC	4 cut(s)	459, 489, 900, 930
Bsc4I	CCNNNNNNNGG	4 cut(s)	70, 436, 502, 568
Bse1I	ACTGG	4 cut(s)	38, 281, 615, 1064
BseBI	CCWGG	2 cut(s)	65, 431
BseDI	CCNNGG	4 cut(s)	471, 532, 904, 937
BseLI	CCNNNNNNNGG	4 cut(s)	70, 436, 502, 568
BseMII	CTCAG	3 cut(s)	168, 242, 339
BseNI	ACTGG	4 cut(s)	38, 281, 615, 1064
BseRI	GAGGAG	1 cut(s)	480
BseYI	CCCAGC	2 cut(s)	655, 759
BshFI	GGCC	6 cut(s)	226, 495, 519, 579, 614, 852
BslI	CCNNNNNNNGG	4 cut(s)	70, 436, 502, 568
BsmAI	GTCTC	3 cut(s)	79, 124, 980
BsnI	GGCC	6 cut(s)	226, 495, 519, 579, 614, 852
Bso31I	GGTCTC	3 cut(s)	79, 124, 980
Bsp1407I	TGTACA	1 cut(s)	486
Bsp143I	GATC	5 cut(s)	23, 51, 289, 888, 1075
Bsp19I	CCATGG	1 cut(s)	471
BspACI	CCGC	4 cut(s)	603, 725, 897, 900
BspANI	GGCC	6 cut(s)	226, 495, 519, 579, 614, 852
BspCNI	CTCAG	3 cut(s)	167, 243, 338
BspLI	GGNNCC	7 cut(s)	469, 496, 580, 773, 853, 910, 955
BspPI	GGATC	2 cut(s)	31, 1070
BspTNI	GGTCTC	3 cut(s)	79, 124, 980
BsrGI	TGTACA	1 cut(s)	486
BsrI	ACTGG	4 cut(s)	38, 281, 615, 1064
BssECI	CCNNGG	4 cut(s)	471, 532, 904, 937
BssMI	GATC	5 cut(s)	23, 51, 289, 888, 1075
BssT1I	CCWWGG	3 cut(s)	471, 904, 937
Bst2UI	CCWGG	2 cut(s)	65, 431
Bst4CI	ACNGT	5 cut(s)	164, 451, 460, 486, 985
BstAPI	GCANNNNNTGC	1 cut(s)	335
BstAUI	TGTACA	1 cut(s)	486
BstC8I	GCNNGC	2 cut(s)	97, 577
BstDEI	CTNAG	4 cut(s)	154, 251, 325, 592
BstDSI	CCRYGG	2 cut(s)	471, 532
BstENI	CCTNNNNNAGG	1 cut(s)	434
BstHHI	GCGC	1 cut(s)	1025
BstKTI	GATC	5 cut(s)	26, 54, 292, 891, 1078
BstMAI	GTCTC	3 cut(s)	79, 124, 980
BstMBI	GATC	5 cut(s)	23, 51, 289, 888, 1075
BstMWI	GCNNNNNNNGC	5 cut(s)	197, 335, 882, 908, 1022
BstNI	CCWGG	2 cut(s)	65, 431
BstNSI	RCATGY	1 cut(s)	103
BstPAI	GACNNNNGTC	1 cut(s)	12
BstSCI	CCNGG	2 cut(s)	63, 429
BstV2I	GAAGAC	1 cut(s)	961
BsuRI	GGCC	6 cut(s)	226, 495, 519, 579, 614, 852
BtgI	CCRYGG	2 cut(s)	471, 532
BtsIMutI	CAGTG	5 cut(s)	456, 482, 981, 1071, 1096
Cac8I	GCNNGC	2 cut(s)	97, 577
CfoI	GCGC	1 cut(s)	1025
Cfr13I	GGNCC	4 cut(s)	494, 578, 612, 851
Csp6I	GTAC	3 cut(s)	319, 487, 652
CspCI	CAANNNNNGTGG	2 cut(s)	423, 458
CviAII	CATG	5 cut(s)	100, 136, 167, 472, 886
CviQI	GTAC	3 cut(s)	319, 487, 652
DdeI	CTNAG	4 cut(s)	154, 251, 325, 592
DpnI	GATC	5 cut(s)	25, 53, 291, 890, 1077
DpnII	GATC	5 cut(s)	23, 51, 289, 888, 1075
DraI	TTTAAA	2 cut(s)	127, 645
Eco130I	CCWWGG	3 cut(s)	471, 904, 937
Eco31I	GGTCTC	3 cut(s)	79, 124, 980
Eco32I	GATATC	1 cut(s)	508
Eco57I	CTGAAG	1 cut(s)	765
EcoNI	CCTNNNNNAGG	1 cut(s)	434
EcoO109I	RGGNCCY	2 cut(s)	494, 851
EcoRII	CCWGG	2 cut(s)	63, 429
EcoRV	GATATC	1 cut(s)	508
EcoT14I	CCWWGG	3 cut(s)	471, 904, 937
EcoT22I	ATGCAT	2 cut(s)	689, 887
ErhI	CCWWGG	3 cut(s)	471, 904, 937
FaeI	CATG	5 cut(s)	103, 139, 170, 475, 889
FalI	AAGNNNNNCTT	2 cut(s)	921, 953
FatI	CATG	5 cut(s)	99, 135, 166, 471, 885
FbaI	TGATCA	2 cut(s)	289, 888
FblI	GTMKAC	1 cut(s)	159
Fnu4HI	GCNGC	1 cut(s)	900
Fsp4HI	GCNGC	1 cut(s)	900
FspBI	CTAG	4 cut(s)	540, 597, 905, 1013
GlaI	GCGC	1 cut(s)	1024
GluI	GCNGC	1 cut(s)	900
GsaI	CCCAGC	2 cut(s)	659, 763
HaeIII	GGCC	6 cut(s)	226, 495, 519, 579, 614, 852
HhaI	GCGC	1 cut(s)	1025
Hin1II	CATG	5 cut(s)	103, 139, 170, 475, 889
Hin6I	GCGC	1 cut(s)	1023
HinP1I	GCGC	1 cut(s)	1023
HincII	GTYRAC	1 cut(s)	352
HindII	GTYRAC	1 cut(s)	352
HinfI	GANTC	4 cut(s)	34, 235, 551, 764
HphI	GGTGA	3 cut(s)	361, 487, 886
Hpy166II	GTNNAC	7 cut(s)	160, 321, 352, 409, 787, 934, 1094
Hpy188III	TCNNGA	8 cut(s)	49, 209, 241, 250, 275, 287, 792, 807
Hpy8I	GTNNAC	7 cut(s)	160, 321, 352, 409, 787, 934, 1094
HpyAV	CCTTC	5 cut(s)	89, 205, 368, 382, 698
HpyCH4III	ACNGT	5 cut(s)	164, 451, 460, 486, 985
HpyCH4IV	ACGT	2 cut(s)	354, 411
HpyCH4V	TGCA	6 cut(s)	95, 338, 687, 815, 826, 885
HpyF10VI	GCNNNNNNNGC	5 cut(s)	197, 335, 882, 908, 1022
HpyF3I	CTNAG	4 cut(s)	154, 251, 325, 592
HpySE526I	ACGT	2 cut(s)	354, 411
Hsp92II	CATG	5 cut(s)	103, 139, 170, 475, 889
HspAI	GCGC	1 cut(s)	1023
Ksp22I	TGATCA	2 cut(s)	289, 888
Kzo9I	GATC	5 cut(s)	23, 51, 289, 888, 1075
LmnI	GCTCC	4 cut(s)	467, 777, 908, 953
LweI	GCATC	3 cut(s)	347, 576, 1095
MaeI	CTAG	4 cut(s)	540, 597, 905, 1013
MaeII	ACGT	2 cut(s)	354, 411
MaeIII	GTNAC	2 cut(s)	862, 1066
MalI	GATC	5 cut(s)	25, 53, 291, 890, 1077
MboI	GATC	5 cut(s)	23, 51, 289, 888, 1075
MboII	GAAGA	2 cut(s)	613, 961
MluCI	AATT	3 cut(s)	83, 795, 948
MlyI	GAGTC	3 cut(s)	43, 229, 545
MmeI	TCCRAC	3 cut(s)	41, 442, 681
MnlI	CCTC	7 cut(s)	334, 458, 509, 762, 842, 888, 1027
Mph1103I	ATGCAT	2 cut(s)	689, 887
MseI	TTAA	3 cut(s)	126, 414, 644
MslI	CAYNNNNRTG	2 cut(s)	113, 476
MspR9I	CCNGG	2 cut(s)	65, 431
MssI	GTTTAAAC	1 cut(s)	127
MvaI	CCWGG	2 cut(s)	65, 431
MwoI	GCNNNNNNNGC	5 cut(s)	197, 335, 882, 908, 1022
NcoI	CCATGG	1 cut(s)	471
NdeII	GATC	5 cut(s)	23, 51, 289, 888, 1075
NlaIII	CATG	5 cut(s)	103, 139, 170, 475, 889
NlaIV	GGNNCC	7 cut(s)	469, 496, 580, 773, 853, 910, 955
NmuCI	GTSAC	1 cut(s)	1066
NsiI	ATGCAT	2 cut(s)	689, 887
NspI	RCATGY	1 cut(s)	103
PfeI	GAWTC	1 cut(s)	764
PkrI	GCNGC	1 cut(s)	901
PleI	GAGTC	3 cut(s)	42, 229, 545
PmeI	GTTTAAAC	1 cut(s)	127
PpsI	GAGTC	3 cut(s)	42, 229, 545
PshAI	GACNNNNGTC	1 cut(s)	12
Psp1406I	AACGTT	1 cut(s)	411
Psp6I	CCWGG	2 cut(s)	63, 429
PspFI	CCCAGC	2 cut(s)	655, 759
PspGI	CCWGG	2 cut(s)	63, 429
PspN4I	GGNNCC	7 cut(s)	469, 496, 580, 773, 853, 910, 955
PspPI	GGNCC	4 cut(s)	494, 578, 612, 851
RsaI	GTAC	3 cut(s)	320, 488, 653
RsaNI	GTAC	3 cut(s)	319, 487, 652
RseI	CAYNNNNRTG	2 cut(s)	113, 476
SaqAI	TTAA	3 cut(s)	126, 414, 644
SatI	GCNGC	1 cut(s)	900
Sau3AI	GATC	5 cut(s)	23, 51, 289, 888, 1075
Sau96I	GGNCC	4 cut(s)	494, 578, 612, 851
SchI	GAGTC	3 cut(s)	43, 229, 545
ScrFI	CCNGG	2 cut(s)	65, 431
SfaNI	GCATC	3 cut(s)	347, 576, 1095
SmiMI	CAYNNNNRTG	2 cut(s)	113, 476
SmlI	CTYRAG	3 cut(s)	275, 1018, 1055
SmoI	CTYRAG	3 cut(s)	275, 1018, 1055
Sse9I	AATT	3 cut(s)	83, 795, 948
SsiI	CCGC	4 cut(s)	603, 725, 897, 900
SspMI	CTAG	4 cut(s)	540, 597, 905, 1013
StyD4I	CCNGG	2 cut(s)	63, 429
StyI	CCWWGG	3 cut(s)	471, 904, 937
TaaI	ACNGT	5 cut(s)	164, 451, 460, 486, 985
TaiI	ACGT	2 cut(s)	357, 414
TaqI	TCGA	2 cut(s)	26, 767
TaqII	GACCGA	1 cut(s)	962
TasI	AATT	3 cut(s)	83, 795, 948
TatI	WGTACW	2 cut(s)	318, 486
TauI	GCSGC	1 cut(s)	902
TfiI	GAWTC	1 cut(s)	764
Tru1I	TTAA	3 cut(s)	126, 414, 644
Tru9I	TTAA	3 cut(s)	126, 414, 644
TscAI	CASTG	5 cut(s)	463, 489, 988, 1071, 1096
TseFI	GTSAC	1 cut(s)	1066
Tsp45I	GTSAC	1 cut(s)	1066
TspDTI	ATGAA	4 cut(s)	329, 364, 613, 952
TspRI	CASTG	5 cut(s)	463, 489, 988, 1071, 1096
XagI	CCTNNNNNAGG	1 cut(s)	434
XceI	RCATGY	1 cut(s)	103
XmaJI	CCTAGG	1 cut(s)	904
XmiI	GTMKAC	1 cut(s)	159
XspI	CTAG	4 cut(s)	540, 597, 905, 1013
Zsp2I	ATGCAT	2 cut(s)	689, 887

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.