Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005000.1

Orthogroup ID

OG0003116

Physical Location & Seq

Genomic Coordinates Reverse (-)

38669 .. 40466

Gene Structure 1798 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005000.1_g000009.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1092 bp

atggtgtccctgcaatttggatatgctgggatgtatattataagcatggttggtttaaagcgcggtatgaaccacttcgtcctggctacctataggcatttcattgcctttgctgtgatcgcacccttcgcacttgtcctcgaaaggaaaataaggccaaaactgactccctccatcttcctaagaataatggtgcttggttttctcgagcctgtgctagctcaaaacttatacttcgtgggaatgacatacacttccgcaacatttgcttcagccactgctaatatcctccctgccattaccttcattttcgcacttattttcaggttggagaaaatcaatttgaagaagatccctagcgtagcaaaggtgatcggaactgtaatcaccgtcagtggagcaatgctcatgacgttttacaaaggcccgatcgttgaatttataagtgcacaagctagtcaccatgcaaccactgctgccgccaccgacaagcattgggttctcggcactgtcatgctcctagctcgttgctgtggttggtccggtttcttcattctccaatcgtttactttgaaggtgtacccagcagagctctctctcactgctttgatctgcttcatgggtgctttggaaggtgccgtagctacactagttatcgaacacaacatgagtgtttgggttataggctgggactctaggctccttgctgcagcttactctgggatagtttgctctggaattgcattttatgttcaagggattgtgatgaaggaacaaggccctgtgttcgtcacagctttcagcccactggccatgatcatcaccgccgctctagccgccattattttagctgagcaagtccgccttggaagtgtaattgggaccattctcatagtcattggcctctatgctgttgtgtggggtaaaagtaaagaacgttcagcctcaatgaaagatgtgaaaactattgatcatgaattgccaatcactcatgatactgcaagatcatcaacaactgttgatagcaagaatgatactattggactcgaggagaatgttgtcaaagttccaattaacccacaagaatcatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003333 GO:0003674 GO:0005215 GO:0005342 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006820 GO:0006865 GO:0008150 GO:0008509 GO:0008514 GO:0015075 GO:0015171 GO:0015318 GO:0015711 GO:0015849 GO:0016020 GO:0022857 GO:0032973 GO:0034220 GO:0042592 GO:0043090 GO:0044464 GO:0046942 GO:0046943 GO:0048878 GO:0050801 GO:0051179 GO:0051234 GO:0055081 GO:0055085 GO:0065007 GO:0065008 GO:0071702 GO:0071705 GO:0071944 GO:0080144 GO:0098656 GO:0140115 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EamA

Protein Analysis

363

Amino Acids

39.43

Weight (kDa)

9.18

Isoelectric Point (pI)

31.44

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003116)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G21890 AT1G21890 AT1G44800 AT4G08300
fragaria_vesca	FvH4_2g26691 FvH4_2g26691 FvH4_2g26691 FvH4_2g26700
malus_domestica	MD00G1157200.v1.1 MD15G1351700.v1.1 MD15G1351800.v1.1
prunus_persica	Prupe.1G500400_v2.0.a1 Prupe.1G500400_v2.0.a1 Prupe.1G500500_v2.0.a1
pyrus_communis	pycom08g14190 pycom15g31510
rosa_chinensis	RchiOBHm_Chr6g0295541 RchiOBHm_Chr6g0295571
rosa_laevigata	RLG00000011789 RLG00000011792
rosa_multiflora	Rmu_sc0005000.1_g000009 Rmu_sc0005000.1_g000012
rosa_roxburghii	Rroxscaffold_7G00172360 Rroxscaffold_7G00172380
rosa_rugosa	Rorug06G0251800 Rorug06G0251900 Rorug06G0252000 Rorug06G0252100
rosa_samantha	Rh6AG365000 Rh6AG365200 Rh6BG373400 Rh6CG379600 Rh6CG379800 Rh6DG366100 Rh6DG366400
rosa_wichuraiana	Rw6G031880 Rw6G031890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	41, 443
AccB1I	GGYRCC	1 cut(s)	635
AccBSI	CCGCTC	1 cut(s)	830
AccII	CGCG	1 cut(s)	63
AciI	CCGC	7 cut(s)	63, 258, 480, 825, 828, 837, 862
AclI	AACGTT	1 cut(s)	937
AclWI	GGATC	1 cut(s)	346
AcoI	YGGCCR	1 cut(s)	810
AcsI	RAATTY	1 cut(s)	437
AcuI	CTGAAG	1 cut(s)	255
AfaI	GTAC	1 cut(s)	581
AgsI	TTSAA	4 cut(s)	346, 437, 574, 755
AhlI	ACTAGT	1 cut(s)	649
AjnI	CCWGG	1 cut(s)	81
AluBI	AGCT	8 cut(s)	221, 455, 524, 592, 644, 713, 797, 851
AluI	AGCT	8 cut(s)	221, 455, 524, 592, 644, 713, 797, 851
Alw21I	GWGCWC	2 cut(s)	451, 594
Alw44I	GTGCAC	1 cut(s)	447
AlwI	GGATC	1 cut(s)	346
AlwNI	CAGNNNCTG	1 cut(s)	278
Ama87I	CYCGRG	2 cut(s)	206, 1046
AoxI	GGCC	5 cut(s)	155, 424, 778, 810, 901
ApaLI	GTGCAC	1 cut(s)	447
ApeKI	GCWGC	3 cut(s)	476, 707, 710
ApoI	RAATTY	1 cut(s)	437
Asp700I	GAANNNNTTC	1 cut(s)	74
AspLEI	GCGC	1 cut(s)	63
AspS9I	GGNCC	4 cut(s)	425, 540, 779, 882
AsuHPI	GGTGA	4 cut(s)	379, 382, 452, 814
AsuNHI	GCTAGC	1 cut(s)	217
AvaI	CYCGRG	2 cut(s)	206, 1046
AvaII	GGWCC	2 cut(s)	540, 882
BaeGI	GKGCMC	1 cut(s)	451
BalI	TGGCCA	1 cut(s)	812
BanI	GGYRCC	1 cut(s)	635
BanII	GRGCYC	1 cut(s)	594
Bbv12I	GWGCWC	2 cut(s)	451, 594
BbvI	GCAGC	3 cut(s)	463, 694, 722
BccI	CCATC	1 cut(s)	182
BceAI	ACGGC	1 cut(s)	623
BciT130I	CCWGG	1 cut(s)	83
BclI	TGATCA	2 cut(s)	816, 970
BcuI	ACTAGT	1 cut(s)	649
BfaI	CTAG	7 cut(s)	218, 357, 456, 521, 650, 696, 833
BfmI	CTRYAG	2 cut(s)	91, 708
BisI	GCNGC	6 cut(s)	477, 480, 708, 711, 828, 837
BlpI	GCTNAGC	1 cut(s)	852
BlsI	GCNGC	6 cut(s)	478, 481, 709, 712, 829, 838
Bme1390I	CCNGG	1 cut(s)	83
Bme18I	GGWCC	2 cut(s)	540, 882
BmeT110I	CYCGRG	2 cut(s)	206, 1046
BmgT120I	GGNCC	4 cut(s)	425, 540, 779, 882
BmiI	GGNNCC	3 cut(s)	637, 701, 883
BmrFI	CCNGG	1 cut(s)	83
BmtI	GCTAGC	1 cut(s)	221
BplI	GAGNNNNNCTC	2 cut(s)	390, 422
Bpu1102I	GCTNAGC	1 cut(s)	852
BsaJI	CCNNGG	1 cut(s)	865
BsaWI	WCCGGW	1 cut(s)	542
Bse1I	ACTGG	1 cut(s)	813
Bse3DI	GCAATG	2 cut(s)	102, 408
BseBI	CCWGG	1 cut(s)	83
BseDI	CCNNGG	1 cut(s)	865
BseGI	GGATG	1 cut(s)	36
BseMI	GCAATG	2 cut(s)	102, 408
BseMII	CTCAG	1 cut(s)	843
BseNI	ACTGG	1 cut(s)	813
BseRI	GAGGAG	1 cut(s)	1064
BseSI	GKGCMC	1 cut(s)	451
BseXI	GCAGC	3 cut(s)	463, 694, 722
BseYI	CCCAGC	3 cut(s)	26, 583, 687
Bsh1236I	CGCG	1 cut(s)	63
Bsh1285I	CGRYCG	1 cut(s)	432
BshFI	GGCC	5 cut(s)	157, 426, 780, 812, 903
BshNI	GGYRCC	1 cut(s)	635
BsiEI	CGRYCG	1 cut(s)	432
BsiHKAI	GWGCWC	2 cut(s)	451, 594
BsiHKCI	CYCGRG	2 cut(s)	206, 1046
BsiSI	CCGG	1 cut(s)	543
BslFI	GGGAC	2 cut(s)	704, 895
BsmFI	GGGAC	2 cut(s)	704, 895
BsnI	GGCC	5 cut(s)	157, 426, 780, 812, 903
BsoBI	CYCGRG	2 cut(s)	206, 1046
Bsp1286I	GDGCHC	2 cut(s)	451, 594
Bsp143I	GATC	8 cut(s)	117, 351, 372, 429, 609, 816, 970, 1004
Bsp1720I	GCTNAGC	1 cut(s)	852
BspACI	CCGC	7 cut(s)	63, 258, 480, 825, 828, 837, 862
BspANI	GGCC	5 cut(s)	157, 426, 780, 812, 903
BspCNI	CTCAG	1 cut(s)	844
BspFNI	CGCG	1 cut(s)	63
BspHI	TCATGA	4 cut(s)	408, 973, 991, 1088
BspLI	GGNNCC	3 cut(s)	637, 701, 883
BspMAI	CTGCAG	1 cut(s)	712
BspOI	GCTAGC	1 cut(s)	221
BspPI	GGATC	1 cut(s)	346
BspT107I	GGYRCC	1 cut(s)	635
BsrBI	CCGCTC	1 cut(s)	830
BsrDI	GCAATG	2 cut(s)	102, 408
BsrI	ACTGG	1 cut(s)	813
BssECI	CCNNGG	1 cut(s)	865
BssMI	GATC	8 cut(s)	117, 351, 372, 429, 609, 816, 970, 1004
BssT1I	CCWWGG	1 cut(s)	865
Bst2UI	CCWGG	1 cut(s)	83
Bst4CI	ACNGT	4 cut(s)	382, 391, 511, 1018
BstAPI	GCANNNNNTGC	2 cut(s)	266, 473
BstC8I	GCNNGC	1 cut(s)	219
BstDEI	CTNAG	2 cut(s)	182, 852
BstF5I	GGATG	1 cut(s)	36
BstFNI	CGCG	1 cut(s)	63
BstHHI	GCGC	1 cut(s)	63
BstKTI	GATC	8 cut(s)	120, 354, 375, 432, 612, 819, 973, 1007
BstMBI	GATC	8 cut(s)	117, 351, 372, 429, 609, 816, 970, 1004
BstMCI	CGRYCG	1 cut(s)	432
BstMWI	GCNNNNNNNGC	6 cut(s)	119, 128, 266, 473, 833, 836
BstNI	CCWGG	1 cut(s)	83
BstSCI	CCNGG	1 cut(s)	81
BstSFI	CTRYAG	2 cut(s)	91, 708
BstSLI	GKGCMC	1 cut(s)	451
BstUI	CGCG	1 cut(s)	63
BstV1I	GCAGC	3 cut(s)	463, 694, 722
BstX2I	RGATCY	1 cut(s)	351
BstYI	RGATCY	1 cut(s)	351
BsuRI	GGCC	5 cut(s)	157, 426, 780, 812, 903
BtsCI	GGATG	1 cut(s)	36
BtsI	GCAGTG	3 cut(s)	276, 471, 600
BtsIMutI	CAGTG	6 cut(s)	276, 400, 471, 507, 600, 806
Cac8I	GCNNGC	1 cut(s)	219
CaiI	CAGNNNCTG	1 cut(s)	278
CciI	TCATGA	4 cut(s)	408, 973, 991, 1088
CfoI	GCGC	1 cut(s)	63
Cfr13I	GGNCC	4 cut(s)	425, 540, 779, 882
Csp6I	GTAC	1 cut(s)	580
CviQI	GTAC	1 cut(s)	580
DdeI	CTNAG	2 cut(s)	182, 852
DpnI	GATC	8 cut(s)	119, 353, 374, 431, 611, 818, 972, 1006
DpnII	GATC	8 cut(s)	117, 351, 372, 429, 609, 816, 970, 1004
DraI	TTTAAA	1 cut(s)	57
EaeI	YGGCCR	1 cut(s)	810
EciI	GGCGGA	1 cut(s)	851
Ecl136II	GAGCTC	1 cut(s)	592
Eco130I	CCWWGG	1 cut(s)	865
Eco24I	GRGCYC	1 cut(s)	594
Eco47I	GGWCC	2 cut(s)	540, 882
Eco53kI	GAGCTC	1 cut(s)	592
Eco57I	CTGAAG	1 cut(s)	255
Eco88I	CYCGRG	2 cut(s)	206, 1046
EcoICRI	GAGCTC	1 cut(s)	592
EcoO109I	RGGNCCY	1 cut(s)	779
EcoRII	CCWGG	1 cut(s)	81
EcoT14I	CCWWGG	1 cut(s)	865
EcoT38I	GRGCYC	1 cut(s)	594
ErhI	CCWWGG	1 cut(s)	865
FalI	AAGNNNNNCTT	2 cut(s)	849, 881
FaqI	GGGAC	2 cut(s)	704, 895
FbaI	TGATCA	2 cut(s)	816, 970
Fnu4HI	GCNGC	6 cut(s)	477, 480, 708, 711, 828, 837
FokI	GGATG	1 cut(s)	43
FriOI	GRGCYC	1 cut(s)	594
Fsp4HI	GCNGC	6 cut(s)	477, 480, 708, 711, 828, 837
FspBI	CTAG	7 cut(s)	218, 357, 456, 521, 650, 696, 833
GlaI	GCGC	1 cut(s)	62
GluI	GCNGC	6 cut(s)	477, 480, 708, 711, 828, 837
GsaI	CCCAGC	3 cut(s)	30, 587, 691
HaeIII	GGCC	5 cut(s)	157, 426, 780, 812, 903
HapII	CCGG	1 cut(s)	543
HhaI	GCGC	1 cut(s)	63
Hin6I	GCGC	1 cut(s)	61
HinP1I	GCGC	1 cut(s)	61
HinfI	GANTC	4 cut(s)	166, 692, 1044, 1085
HpaII	CCGG	1 cut(s)	543
HphI	GGTGA	4 cut(s)	379, 382, 452, 814
Hpy166II	GTNNAC	3 cut(s)	449, 567, 580
Hpy188I	TCNGA	1 cut(s)	377
Hpy188III	TCNNGA	6 cut(s)	206, 409, 735, 974, 992, 1089
Hpy8I	GTNNAC	3 cut(s)	449, 567, 580
HpyAV	CCTTC	5 cut(s)	136, 313, 568, 626, 763
HpyCH4III	ACNGT	4 cut(s)	382, 391, 511, 1018
HpyCH4IV	ACGT	2 cut(s)	413, 937
HpyCH4V	TGCA	6 cut(s)	13, 449, 467, 710, 743, 1001
HpyF10VI	GCNNNNNNNGC	6 cut(s)	119, 128, 266, 473, 833, 836
HpyF3I	CTNAG	2 cut(s)	182, 852
HpySE526I	ACGT	2 cut(s)	413, 937
HspAI	GCGC	1 cut(s)	61
Ksp22I	TGATCA	2 cut(s)	816, 970
Kzo9I	GATC	8 cut(s)	117, 351, 372, 429, 609, 816, 970, 1004
LmnI	GCTCC	3 cut(s)	398, 522, 705
Lsp1109I	GCAGC	3 cut(s)	463, 694, 722
MaeI	CTAG	7 cut(s)	218, 357, 456, 521, 650, 696, 833
MaeII	ACGT	2 cut(s)	413, 937
MaeIII	GTNAC	2 cut(s)	458, 790
MalI	GATC	8 cut(s)	119, 353, 374, 431, 611, 818, 972, 1006
MbiI	CCGCTC	1 cut(s)	830
MboI	GATC	8 cut(s)	117, 351, 372, 429, 609, 816, 970, 1004
MboII	GAAGA	4 cut(s)	169, 358, 361, 541
MflI	RGATCY	1 cut(s)	351
MhlI	GDGCHC	2 cut(s)	451, 594
MlsI	TGGCCA	1 cut(s)	812
MluCI	AATT	7 cut(s)	14, 340, 437, 738, 876, 977, 1071
MluNI	TGGCCA	1 cut(s)	812
MlyI	GAGTC	3 cut(s)	160, 686, 1038
MmeI	TCCRAC	1 cut(s)	309
MnlI	CCTC	6 cut(s)	149, 181, 299, 914, 955, 1042
Mox20I	TGGCCA	1 cut(s)	812
MroXI	GAANNNNTTC	1 cut(s)	74
MscI	TGGCCA	1 cut(s)	812
MseI	TTAA	2 cut(s)	56, 1074
MslI	CAYNNNNRTG	1 cut(s)	512
Msp20I	TGGCCA	1 cut(s)	812
MspI	CCGG	1 cut(s)	543
MspR9I	CCNGG	1 cut(s)	83
MvaI	CCWGG	1 cut(s)	83
MvnI	CGCG	1 cut(s)	63
MwoI	GCNNNNNNNGC	6 cut(s)	119, 128, 266, 473, 833, 836
NdeII	GATC	8 cut(s)	117, 351, 372, 429, 609, 816, 970, 1004
NheI	GCTAGC	1 cut(s)	217
NlaIV	GGNNCC	3 cut(s)	637, 701, 883
NmeAIII	GCCGAG	1 cut(s)	483
NmuCI	GTSAC	2 cut(s)	458, 790
PaeR7I	CTCGAG	2 cut(s)	206, 1046
PagI	TCATGA	4 cut(s)	408, 973, 991, 1088
PdmI	GAANNNNTTC	1 cut(s)	74
PfeI	GAWTC	1 cut(s)	1085
PkrI	GCNGC	6 cut(s)	478, 481, 709, 712, 829, 838
Ple19I	CGATCG	1 cut(s)	432
PleI	GAGTC	3 cut(s)	160, 686, 1038
PpsI	GAGTC	3 cut(s)	160, 686, 1038
PsiI	TTATAA	2 cut(s)	41, 443
Psp124BI	GAGCTC	1 cut(s)	594
Psp1406I	AACGTT	1 cut(s)	937
Psp6I	CCWGG	1 cut(s)	81
PspFI	CCCAGC	3 cut(s)	26, 583, 687
PspGI	CCWGG	1 cut(s)	81
PspN4I	GGNNCC	3 cut(s)	637, 701, 883
PspPI	GGNCC	4 cut(s)	425, 540, 779, 882
PspXI	VCTCGAGB	1 cut(s)	1046
PsrI	GAACNNNNNNTAC	2 cut(s)	922, 954
PstI	CTGCAG	1 cut(s)	712
PstNI	CAGNNNCTG	1 cut(s)	278
PsuI	RGATCY	1 cut(s)	351
PvuI	CGATCG	1 cut(s)	432
RsaI	GTAC	1 cut(s)	581
RsaNI	GTAC	1 cut(s)	580
RseI	CAYNNNNRTG	1 cut(s)	512
SacI	GAGCTC	1 cut(s)	594
SaqAI	TTAA	2 cut(s)	56, 1074
SatI	GCNGC	6 cut(s)	477, 480, 708, 711, 828, 837
Sau3AI	GATC	8 cut(s)	117, 351, 372, 429, 609, 816, 970, 1004
Sau96I	GGNCC	4 cut(s)	425, 540, 779, 882
SchI	GAGTC	3 cut(s)	160, 686, 1038
ScrFI	CCNGG	1 cut(s)	83
SduI	GDGCHC	2 cut(s)	451, 594
SfcI	CTRYAG	2 cut(s)	91, 708
Sfr274I	CTCGAG	2 cut(s)	206, 1046
SinI	GGWCC	2 cut(s)	540, 882
SlaI	CTCGAG	2 cut(s)	206, 1046
SmiMI	CAYNNNNRTG	1 cut(s)	512
SmlI	CTYRAG	2 cut(s)	206, 1046
SmoI	CTYRAG	2 cut(s)	206, 1046
SpeI	ACTAGT	1 cut(s)	649
Sse9I	AATT	7 cut(s)	14, 340, 437, 738, 876, 977, 1071
SsiI	CCGC	7 cut(s)	63, 258, 480, 825, 828, 837, 862
SspMI	CTAG	7 cut(s)	218, 357, 456, 521, 650, 696, 833
SstI	GAGCTC	1 cut(s)	594
StyD4I	CCNGG	1 cut(s)	81
StyI	CCWWGG	1 cut(s)	865
TaaI	ACNGT	4 cut(s)	382, 391, 511, 1018
TaiI	ACGT	2 cut(s)	416, 940
TaqI	TCGA	4 cut(s)	141, 207, 657, 1047
TasI	AATT	7 cut(s)	14, 340, 437, 738, 876, 977, 1071
TauI	GCSGC	3 cut(s)	482, 830, 839
TfiI	GAWTC	1 cut(s)	1085
Tru1I	TTAA	2 cut(s)	56, 1074
Tru9I	TTAA	2 cut(s)	56, 1074
TscAI	CASTG	6 cut(s)	283, 400, 478, 514, 607, 813
TseFI	GTSAC	2 cut(s)	458, 790
TseI	GCWGC	3 cut(s)	476, 707, 710
Tsp45I	GTSAC	2 cut(s)	458, 790
TspDTI	ATGAA	8 cut(s)	83, 91, 295, 541, 607, 782, 965, 990
TspRI	CASTG	6 cut(s)	283, 400, 478, 514, 607, 813
VneI	GTGCAC	1 cut(s)	447
VpaK11BI	GGWCC	2 cut(s)	540, 882
XapI	RAATTY	1 cut(s)	437
XhoI	CTCGAG	2 cut(s)	206, 1046
XmnI	GAANNNNTTC	1 cut(s)	74
XspI	CTAG	7 cut(s)	218, 357, 456, 521, 650, 696, 833

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.