Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr8

Orthogroup ID

OG0003116

Physical Location & Seq

Genomic Coordinates Reverse (-)

13253863 .. 13257194

Gene Structure 3332 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom08g14190.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 828 bp

ATGGAAGAGTCTAAGTTGAGTTTATTTCTCATCAAGATAAAGCCTTACTTGGCTATGATCTCCCTTCAGTTTGGATACTCAGGCATGTACATCATTAGTATGGTCTCATTGAAGCATGGCATGAGTCACTTCGTTCTCTCCGTTTACCGTCACGTTGTTGCCTTCTGTGTCATTGCACCCTTCGCCTTTTTTCTTGAAAGGAAAATAAGGCCAAGAATGACTCTCCCGATATTCCTCCGAATAGTTCTGCTTGGTTTTCTTGAGCCAGTTCTTGATCAAAACTTATACTTTCTGGGAATGAAGTACACCTCAGCAACATTTGCATCTGCTGTTGTCAATGTCCTTCCGGCCATTACCTTCATAATGGCACTTTGTTTCAGGCTAGAGACTGTGAACGTTAAGAAGCTACATAGCCTAGCGAAGGTGATTGGAACCGTAATCACAGTGGGAGGAGCAATCGATCATGACATTGTACAAAGGCCCCATTGTGGATATCATACGAGGACACTCACACAGCCACAACAGCAGCACCACCGACTCCGGCGAACAGCATTGGGTTGCTGGCCCCTTGATGCTCATAGGCAGCTGCGGTGGTTGGGCAAGTTTCTTCATTCTTCAATCATTTACGTTGAAGAAATACCCGGCAGAGCTCTCTCTCACGGCTTGGATATGCTTGATGGGTATGTTGGAAGGTGGAGTAATAACATTTGCAGTGGAACGCAAACTGAGTGTTTGGGTTATAGGTTGGGACTCAAGGCTTCTTGCTTCCGTTTACTCTGGAGTGGTTTGCTCTGGGATTGCATATTATGTGCAAGGAGTTGTGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003333 GO:0003674 GO:0005215 GO:0005342 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0005887 GO:0005938 GO:0006810 GO:0006811 GO:0006820 GO:0006865 GO:0007154 GO:0007165 GO:0008150 GO:0008509 GO:0008514 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009755 GO:0009987 GO:0010033 GO:0015075 GO:0015171 GO:0015179 GO:0015318 GO:0015562 GO:0015711 GO:0015807 GO:0015849 GO:0016020 GO:0016021 GO:0022857 GO:0023052 GO:0031224 GO:0031226 GO:0032870 GO:0032973 GO:0034220 GO:0034639 GO:0042221 GO:0042592 GO:0043090 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0046942 GO:0046943 GO:0048878 GO:0050789 GO:0050794 GO:0050801 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0055081 GO:0055085 GO:0065007 GO:0065008 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0071702 GO:0071705 GO:0071944 GO:0080144 GO:0098656 GO:0099568 GO:0140115 GO:1902475 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EamA

Protein Analysis

276

Amino Acids

31.27

Weight (kDa)

9.45

Isoelectric Point (pI)

40.21

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003116)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G21890 AT1G21890 AT1G44800 AT4G08300
fragaria_vesca	FvH4_2g26691 FvH4_2g26691 FvH4_2g26691 FvH4_2g26700
malus_domestica	MD00G1157200.v1.1 MD15G1351700.v1.1 MD15G1351800.v1.1
prunus_persica	Prupe.1G500400_v2.0.a1 Prupe.1G500400_v2.0.a1 Prupe.1G500500_v2.0.a1
pyrus_communis	pycom08g14190 pycom15g31510
rosa_chinensis	RchiOBHm_Chr6g0295541 RchiOBHm_Chr6g0295571
rosa_laevigata	RLG00000011789 RLG00000011792
rosa_multiflora	Rmu_sc0005000.1_g000009 Rmu_sc0005000.1_g000012
rosa_roxburghii	Rroxscaffold_7G00172360 Rroxscaffold_7G00172380
rosa_rugosa	Rorug06G0251800 Rorug06G0251900 Rorug06G0252000 Rorug06G0252100
rosa_samantha	Rh6AG365000 Rh6AG365200 Rh6BG373400 Rh6CG379600 Rh6CG379800 Rh6DG366100 Rh6DG366400
rosa_wichuraiana	Rw6G031880 Rw6G031890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	589
AclI	AACGTT	1 cut(s)	396
AcoI	YGGCCR	1 cut(s)	348
AcuI	CTGAAG	1 cut(s)	50
AfaI	GTAC	3 cut(s)	89, 305, 474
AfiI	CCNNNNNNNGG	2 cut(s)	421, 488
AgsI	TTSAA	4 cut(s)	112, 197, 618, 632
AluBI	AGCT	3 cut(s)	406, 586, 650
AluI	AGCT	3 cut(s)	406, 586, 650
Alw21I	GWGCWC	1 cut(s)	652
Alw26I	GTCTC	2 cut(s)	109, 380
AoxI	GGCC	4 cut(s)	209, 348, 479, 563
ApeKI	GCWGC	3 cut(s)	526, 583, 586
AspS9I	GGNCC	2 cut(s)	480, 564
AsuC2I	CCSGG	1 cut(s)	642
AsuHPI	GGTGA	1 cut(s)	436
BanII	GRGCYC	1 cut(s)	652
Bbv12I	GWGCWC	1 cut(s)	652
BbvCI	CCTCAGC	1 cut(s)	310
BbvI	GCAGC	3 cut(s)	538, 573, 595
BccI	CCATC	1 cut(s)	671
BceAI	ACGGC	1 cut(s)	676
BciVI	GTATCC	1 cut(s)	68
BclI	TGATCA	1 cut(s)	274
BcnI	CCSGG	1 cut(s)	642
BcoDI	GTCTC	2 cut(s)	109, 380
BfaI	CTAG	2 cut(s)	383, 416
BfuI	GTATCC	1 cut(s)	68
BisI	GCNGC	3 cut(s)	527, 584, 587
BlsI	GCNGC	3 cut(s)	528, 585, 588
Bme1390I	CCNGG	1 cut(s)	642
BmgT120I	GGNCC	2 cut(s)	480, 564
BmiI	GGNNCC	3 cut(s)	433, 482, 566
BmrFI	CCNGG	1 cut(s)	642
BmsI	GCATC	2 cut(s)	332, 562
BpmI	CTGGAG	1 cut(s)	799
Bpu10I	CCTNAGC	1 cut(s)	310
BpuEI	CTTGAG	2 cut(s)	281, 737
BpuMI	CCSGG	1 cut(s)	642
Bsa29I	ATCGAT	1 cut(s)	459
BsaI	GGTCTC	1 cut(s)	109
Bsc4I	CCNNNNNNNGG	2 cut(s)	421, 488
Bse1I	ACTGG	1 cut(s)	266
Bse3DI	GCAATG	1 cut(s)	171
BseCI	ATCGAT	1 cut(s)	459
BseLI	CCNNNNNNNGG	2 cut(s)	421, 488
BseMI	GCAATG	1 cut(s)	171
BseMII	CTCAG	3 cut(s)	93, 324, 717
BseNI	ACTGG	1 cut(s)	266
BseRI	GAGGAG	1 cut(s)	465
BseXI	GCAGC	3 cut(s)	538, 573, 595
BshFI	GGCC	4 cut(s)	211, 350, 481, 565
BshVI	ATCGAT	1 cut(s)	459
BsiHKAI	GWGCWC	1 cut(s)	652
BsiSI	CCGG	3 cut(s)	347, 541, 642
BslFI	GGGAC	1 cut(s)	762
BslI	CCNNNNNNNGG	2 cut(s)	421, 488
BsmAI	GTCTC	2 cut(s)	109, 380
BsmFI	GGGAC	1 cut(s)	762
BsnI	GGCC	4 cut(s)	211, 350, 481, 565
Bso31I	GGTCTC	1 cut(s)	109
Bsp1286I	GDGCHC	1 cut(s)	652
Bsp1407I	TGTACA	2 cut(s)	87, 472
Bsp143I	GATC	3 cut(s)	57, 274, 460
BspACI	CCGC	1 cut(s)	589
BspANI	GGCC	4 cut(s)	211, 350, 481, 565
BspCNI	CTCAG	3 cut(s)	92, 323, 718
BspDI	ATCGAT	1 cut(s)	459
BspHI	TCATGA	1 cut(s)	463
BspLI	GGNNCC	3 cut(s)	433, 482, 566
BspTNI	GGTCTC	1 cut(s)	109
BsrDI	GCAATG	1 cut(s)	171
BsrGI	TGTACA	2 cut(s)	87, 472
BsrI	ACTGG	1 cut(s)	266
BssMI	GATC	3 cut(s)	57, 274, 460
Bst4CI	ACNGT	4 cut(s)	149, 391, 436, 445
BstAPI	GCANNNNNTGC	1 cut(s)	320
BstAUI	TGTACA	2 cut(s)	87, 472
BstC8I	GCNNGC	1 cut(s)	563
BstDEI	CTNAG	4 cut(s)	12, 79, 310, 726
BstENI	CCTNNNNNAGG	1 cut(s)	419
BstKTI	GATC	3 cut(s)	60, 277, 463
BstMAI	GTCTC	2 cut(s)	109, 380
BstMBI	GATC	3 cut(s)	57, 274, 460
BstMWI	GCNNNNNNNGC	3 cut(s)	182, 320, 523
BstNSI	RCATGY	1 cut(s)	88
BstSCI	CCNGG	1 cut(s)	640
BstV1I	GCAGC	3 cut(s)	538, 573, 595
Bsu15I	ATCGAT	1 cut(s)	459
BsuI	GTATCC	1 cut(s)	68
BsuRI	GGCC	4 cut(s)	211, 350, 481, 565
BsuTUI	ATCGAT	1 cut(s)	459
BtsI	GCAGTG	1 cut(s)	718
BtsIMutI	CAGTG	2 cut(s)	450, 718
Cac8I	GCNNGC	1 cut(s)	563
CciI	TCATGA	1 cut(s)	463
Cfr13I	GGNCC	2 cut(s)	480, 564
ClaI	ATCGAT	1 cut(s)	459
Csp6I	GTAC	3 cut(s)	88, 304, 473
CviAII	CATG	4 cut(s)	85, 116, 121, 464
CviQI	GTAC	3 cut(s)	88, 304, 473
DdeI	CTNAG	4 cut(s)	12, 79, 310, 726
DpnI	GATC	3 cut(s)	59, 276, 462
DpnII	GATC	3 cut(s)	57, 274, 460
EaeI	YGGCCR	1 cut(s)	348
Ecl136II	GAGCTC	1 cut(s)	650
Eco24I	GRGCYC	1 cut(s)	652
Eco31I	GGTCTC	1 cut(s)	109
Eco32I	GATATC	1 cut(s)	494
Eco53kI	GAGCTC	1 cut(s)	650
Eco57I	CTGAAG	1 cut(s)	50
EcoICRI	GAGCTC	1 cut(s)	650
EcoNI	CCTNNNNNAGG	1 cut(s)	419
EcoO109I	RGGNCCY	1 cut(s)	480
EcoRV	GATATC	1 cut(s)	494
EcoT38I	GRGCYC	1 cut(s)	652
FaeI	CATG	4 cut(s)	88, 119, 124, 467
FalI	AAGNNNNNCTT	2 cut(s)	32, 64
FaqI	GGGAC	1 cut(s)	762
FatI	CATG	4 cut(s)	84, 115, 120, 463
FbaI	TGATCA	1 cut(s)	274
Fnu4HI	GCNGC	3 cut(s)	527, 584, 587
FriOI	GRGCYC	1 cut(s)	652
Fsp4HI	GCNGC	3 cut(s)	527, 584, 587
FspBI	CTAG	2 cut(s)	383, 416
GluI	GCNGC	3 cut(s)	527, 584, 587
GsuI	CTGGAG	1 cut(s)	799
HaeIII	GGCC	4 cut(s)	211, 350, 481, 565
HapII	CCGG	3 cut(s)	347, 541, 642
Hin1II	CATG	4 cut(s)	88, 119, 124, 467
HinfI	GANTC	5 cut(s)	8, 124, 220, 537, 750
HpaII	CCGG	3 cut(s)	347, 541, 642
HphI	GGTGA	1 cut(s)	436
Hpy166II	GTNNAC	4 cut(s)	145, 306, 394, 773
Hpy188I	TCNGA	1 cut(s)	239
Hpy188III	TCNNGA	7 cut(s)	34, 194, 226, 260, 272, 464, 778
Hpy8I	GTNNAC	4 cut(s)	145, 306, 394, 773
HpyAV	CCTTC	7 cut(s)	74, 172, 190, 353, 367, 415, 684
HpyCH4III	ACNGT	4 cut(s)	149, 391, 436, 445
HpyCH4IV	ACGT	3 cut(s)	153, 396, 627
HpyCH4V	TGCA	5 cut(s)	176, 323, 711, 801, 812
HpyF10VI	GCNNNNNNNGC	3 cut(s)	182, 320, 523
HpyF3I	CTNAG	4 cut(s)	12, 79, 310, 726
HpySE526I	ACGT	3 cut(s)	153, 396, 627
Hsp92II	CATG	4 cut(s)	88, 119, 124, 467
Ksp22I	TGATCA	1 cut(s)	274
Kzo9I	GATC	3 cut(s)	57, 274, 460
LmnI	GCTCC	1 cut(s)	452
Lsp1109I	GCAGC	3 cut(s)	538, 573, 595
LweI	GCATC	2 cut(s)	332, 562
MaeI	CTAG	2 cut(s)	383, 416
MaeII	ACGT	3 cut(s)	153, 396, 627
MaeIII	GTNAC	2 cut(s)	125, 149
MalI	GATC	3 cut(s)	59, 276, 462
MboI	GATC	3 cut(s)	57, 274, 460
MboII	GAAGA	4 cut(s)	17, 599, 606, 644
MhlI	GDGCHC	1 cut(s)	652
MlyI	GAGTC	5 cut(s)	17, 133, 214, 531, 744
MmeI	TCCRAC	1 cut(s)	667
MnlI	CCTC	4 cut(s)	245, 319, 443, 495
MseI	TTAA	1 cut(s)	399
MslI	CAYNNNNRTG	1 cut(s)	98
MspA1I	CMGCKG	1 cut(s)	586
MspI	CCGG	3 cut(s)	347, 541, 642
MspR9I	CCNGG	1 cut(s)	642
MwoI	GCNNNNNNNGC	3 cut(s)	182, 320, 523
NciI	CCSGG	1 cut(s)	642
NdeII	GATC	3 cut(s)	57, 274, 460
NlaIII	CATG	4 cut(s)	88, 119, 124, 467
NlaIV	GGNNCC	3 cut(s)	433, 482, 566
NmuCI	GTSAC	2 cut(s)	125, 149
NspI	RCATGY	1 cut(s)	88
PagI	TCATGA	1 cut(s)	463
PcsI	WCGNNNNNNNCGW	1 cut(s)	138
PkrI	GCNGC	3 cut(s)	528, 585, 588
PleI	GAGTC	5 cut(s)	16, 132, 214, 531, 744
PpsI	GAGTC	5 cut(s)	16, 132, 214, 531, 744
Psp124BI	GAGCTC	1 cut(s)	652
Psp1406I	AACGTT	1 cut(s)	396
PspN4I	GGNNCC	3 cut(s)	433, 482, 566
PspPI	GGNCC	2 cut(s)	480, 564
PvuII	CAGCTG	1 cut(s)	586
RsaI	GTAC	3 cut(s)	89, 305, 474
RsaNI	GTAC	3 cut(s)	88, 304, 473
RseI	CAYNNNNRTG	1 cut(s)	98
SacI	GAGCTC	1 cut(s)	652
SaqAI	TTAA	1 cut(s)	399
SatI	GCNGC	3 cut(s)	527, 584, 587
Sau3AI	GATC	3 cut(s)	57, 274, 460
Sau96I	GGNCC	2 cut(s)	480, 564
SchI	GAGTC	5 cut(s)	17, 133, 214, 531, 744
ScrFI	CCNGG	1 cut(s)	642
SduI	GDGCHC	1 cut(s)	652
SfaNI	GCATC	2 cut(s)	332, 562
SmiMI	CAYNNNNRTG	1 cut(s)	98
SmlI	CTYRAG	2 cut(s)	260, 752
SmoI	CTYRAG	2 cut(s)	260, 752
SsiI	CCGC	1 cut(s)	589
SspMI	CTAG	2 cut(s)	383, 416
SstI	GAGCTC	1 cut(s)	652
StyD4I	CCNGG	1 cut(s)	640
TaaI	ACNGT	4 cut(s)	149, 391, 436, 445
TaiI	ACGT	3 cut(s)	156, 399, 630
TaqI	TCGA	1 cut(s)	459
TatI	WGTACW	3 cut(s)	87, 303, 472
Tru1I	TTAA	1 cut(s)	399
Tru9I	TTAA	1 cut(s)	399
TscAI	CASTG	2 cut(s)	450, 718
TseFI	GTSAC	2 cut(s)	125, 149
TseI	GCWGC	3 cut(s)	526, 583, 586
Tsp45I	GTSAC	2 cut(s)	125, 149
TspDTI	ATGAA	3 cut(s)	314, 349, 599
TspGWI	ACGGA	2 cut(s)	130, 758
TspRI	CASTG	2 cut(s)	450, 718
XagI	CCTNNNNNAGG	1 cut(s)	419
XceI	RCATGY	1 cut(s)	88
XspI	CTAG	2 cut(s)	383, 416

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.