Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0003116

Physical Location & Seq

Genomic Coordinates Forward (+)

21399773 .. 21401997

Gene Structure 2225 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g26700.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1158 bp

ATGGCAGACAAAGGTTCAAATGAAAGAGTTAGTATGTTTCTCAACAAAATAAAGCCTTACTTGGCCATGGTGTCCCTGCAATTCGGATATGCAGGGATGTACATTATCAGCATGGTTGGCTTAAAGCGTGGCATGAACCACTTTGTCCTGGCTACCTATAGGCATTTCATTGCCTTTGCTGTGATCGCACCCTTCGCACTTGTTCTCGAAAGGAAAGTAAGACCAAAACTGACTCTCCCAATCTTCCTGAGAATAATGGTGCTTGGTTTTCTCGAGCCTGTGCTAGCTCAGAACTTATACTTCGTGGGAATGACATACACATCGGCAACATTTGCTTCTGCCACTGCCAATATCCTCCCTGCTATTACCTTCATTTTCGCACTTATTTTCAGGTTGGAGAAAGTCAATTTCAAGAAGATCCCTAGCGTCGCAAAGGTGATCGGAACTGTAATCACCGTGAGCGGAGCCATGCTCATGACCTTTTACAAAGGCCCGATCGTTGAATTCATTAGTGCACAAGCTAGCCACCATGCAACCTCTGCCACCGCCACCGACAAGCACTGGGTTCTCGGCACTGTCATGCTCCTAGCTCGTTGCTGTGGTTGGTCCGGTTTCTTCATTCTCCAATCCTTTACTTTGAAGGTATACCCAGCAGAGCTCTCTCTCACTGCCTTGATCTGCTTTATGGGTGCTTTGGAAGGTGCCGTAGCTACACTGGTAATCGAACACAACATGAGTGTTTGGGTTATAGGCTGGGATTCTAGGCTCCTTGCTGCAGCTTACTCTGGGATAGTTTGCTCTGGAATTGCATTTTACGTGCAAGGGATTGTGATGAAGGAACAAGGCCCTGTGTTCGTCACAGCTTTCAGTCCACTGGCCATGATCATCACTGCCGCTCTAGCCGCTATCATTTTATCTGAGCAAGTCCGCCTGGGAAGTGTAATTGGGACCATGCTCATAGTCATTGGCCTCTATGCTGTTGTGTGGGGTAAAAGTAAAGAACGTTCGGCCTCCATGAAAGATGTGAAAACTATTGATCATGAATTGCCAATCACTAATGTTGCTACAATATCATCAACAACTGTTGATAGCAAGAATGATGCTGCTGGACTTAAGGAGAATGTTGTCAAAATTCCAATTAACCCACAAGAATCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003333 GO:0003674 GO:0005215 GO:0005342 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006820 GO:0006865 GO:0008150 GO:0008509 GO:0008514 GO:0015075 GO:0015171 GO:0015318 GO:0015711 GO:0015849 GO:0016020 GO:0022857 GO:0032973 GO:0034220 GO:0042592 GO:0043090 GO:0044464 GO:0046942 GO:0046943 GO:0048878 GO:0050801 GO:0051179 GO:0051234 GO:0055081 GO:0055085 GO:0065007 GO:0065008 GO:0071702 GO:0071705 GO:0071944 GO:0080144 GO:0098656 GO:0140115 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EamA

Protein Analysis

386

Amino Acids

41.87

Weight (kDa)

9.45

Isoelectric Point (pI)

26.89

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EamA	PF00892	20 - 160	2.5e-13	EamA-like transporter family
EamA	PF00892	191 - 328	1.8e-08	EamA-like transporter family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003116)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G21890 AT1G21890 AT1G44800 AT4G08300
fragaria_vesca	FvH4_2g26691 FvH4_2g26691 FvH4_2g26691 FvH4_2g26700
malus_domestica	MD00G1157200.v1.1 MD15G1351700.v1.1 MD15G1351800.v1.1
prunus_persica	Prupe.1G500400_v2.0.a1 Prupe.1G500400_v2.0.a1 Prupe.1G500500_v2.0.a1
pyrus_communis	pycom08g14190 pycom15g31510
rosa_chinensis	RchiOBHm_Chr6g0295541 RchiOBHm_Chr6g0295571
rosa_laevigata	RLG00000011789 RLG00000011792
rosa_multiflora	Rmu_sc0005000.1_g000009 Rmu_sc0005000.1_g000012
rosa_roxburghii	Rroxscaffold_7G00172360 Rroxscaffold_7G00172380
rosa_rugosa	Rorug06G0251800 Rorug06G0251900 Rorug06G0252000 Rorug06G0252100
rosa_samantha	Rh6AG365000 Rh6AG365200 Rh6BG373400 Rh6CG379600 Rh6CG379800 Rh6DG366100 Rh6DG366400
rosa_wichuraiana	Rw6G031880 Rw6G031890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	701
AccBSI	CCGCTC	2 cut(s)	462, 896
AccI	GTMKAC	1 cut(s)	645
AciI	CCGC	5 cut(s)	462, 546, 894, 903, 928
AclI	AACGTT	1 cut(s)	1003
AclWI	GGATC	1 cut(s)	412
AcoI	YGGCCR	2 cut(s)	63, 876
AcsI	RAATTY	2 cut(s)	503, 1131
AfaI	GTAC	1 cut(s)	101
AflII	CTTAAG	1 cut(s)	1112
AgsI	TTSAA	4 cut(s)	18, 412, 503, 640
AjnI	CCWGG	2 cut(s)	147, 930
AluBI	AGCT	7 cut(s)	287, 521, 590, 658, 710, 779, 863
AluI	AGCT	7 cut(s)	287, 521, 590, 658, 710, 779, 863
Alw21I	GWGCWC	2 cut(s)	517, 660
Alw44I	GTGCAC	1 cut(s)	513
AlwI	GGATC	1 cut(s)	412
Ama87I	CYCGRG	1 cut(s)	272
AoxI	GGCC	6 cut(s)	63, 490, 844, 876, 967, 1008
ApaLI	GTGCAC	1 cut(s)	513
ApeKI	GCWGC	3 cut(s)	773, 776, 1103
ApoI	RAATTY	2 cut(s)	503, 1131
AspS9I	GGNCC	4 cut(s)	491, 606, 845, 948
AsuHPI	GGTGA	2 cut(s)	445, 448
AsuNHI	GCTAGC	2 cut(s)	283, 521
AvaI	CYCGRG	1 cut(s)	272
AvaII	GGWCC	2 cut(s)	606, 948
BaeGI	GKGCMC	1 cut(s)	517
BalI	TGGCCA	2 cut(s)	65, 878
BanI	GGYRCC	1 cut(s)	701
BanII	GRGCYC	1 cut(s)	660
Bbv12I	GWGCWC	2 cut(s)	517, 660
BbvI	GCAGC	3 cut(s)	760, 788, 1090
BceAI	ACGGC	1 cut(s)	689
BciT130I	CCWGG	2 cut(s)	149, 932
BclI	TGATCA	2 cut(s)	882, 1036
BfaI	CTAG	6 cut(s)	284, 423, 522, 587, 762, 899
BfmI	CTRYAG	2 cut(s)	157, 774
BfrI	CTTAAG	1 cut(s)	1112
BisI	GCNGC	5 cut(s)	774, 777, 894, 903, 1104
BlsI	GCNGC	5 cut(s)	775, 778, 895, 904, 1105
Bme1390I	CCNGG	2 cut(s)	149, 932
Bme18I	GGWCC	2 cut(s)	606, 948
BmeT110I	CYCGRG	1 cut(s)	272
BmgT120I	GGNCC	4 cut(s)	491, 606, 845, 948
BmiI	GGNNCC	4 cut(s)	466, 703, 767, 949
BmrFI	CCNGG	2 cut(s)	149, 932
BmrI	ACTGGG	1 cut(s)	571
BmsI	GCATC	1 cut(s)	1090
BmtI	GCTAGC	2 cut(s)	287, 525
BmuI	ACTGGG	1 cut(s)	571
BplI	GAGNNNNNCTC	2 cut(s)	456, 488
BsaAI	YACGTR	1 cut(s)	817
BsaJI	CCNNGG	2 cut(s)	66, 931
BsaWI	WCCGGW	1 cut(s)	608
BsaXI	ACNNNNNCTCC	2 cut(s)	219, 249
Bse1I	ACTGG	3 cut(s)	566, 720, 879
Bse3DI	GCAATG	1 cut(s)	168
BseBI	CCWGG	2 cut(s)	149, 932
BseDI	CCNNGG	2 cut(s)	66, 931
BseGI	GGATG	1 cut(s)	102
BseMI	GCAATG	1 cut(s)	168
BseMII	CTCAG	3 cut(s)	239, 302, 909
BseNI	ACTGG	3 cut(s)	566, 720, 879
BseSI	GKGCMC	1 cut(s)	517
BseXI	GCAGC	3 cut(s)	760, 788, 1090
BseYI	CCCAGC	2 cut(s)	649, 753
Bsh1285I	CGRYCG	1 cut(s)	498
BshFI	GGCC	6 cut(s)	65, 492, 846, 878, 969, 1010
BshNI	GGYRCC	1 cut(s)	701
BsiEI	CGRYCG	1 cut(s)	498
BsiHKAI	GWGCWC	2 cut(s)	517, 660
BsiHKCI	CYCGRG	1 cut(s)	272
BsiSI	CCGG	1 cut(s)	609
BslFI	GGGAC	2 cut(s)	58, 961
BsmFI	GGGAC	2 cut(s)	58, 961
BsnI	GGCC	6 cut(s)	65, 492, 846, 878, 969, 1010
BsoBI	CYCGRG	1 cut(s)	272
Bsp1286I	GDGCHC	2 cut(s)	517, 660
Bsp1407I	TGTACA	1 cut(s)	99
Bsp143I	GATC	7 cut(s)	183, 417, 438, 495, 675, 882, 1036
Bsp19I	CCATGG	1 cut(s)	66
BspACI	CCGC	5 cut(s)	462, 546, 894, 903, 928
BspANI	GGCC	6 cut(s)	65, 492, 846, 878, 969, 1010
BspCNI	CTCAG	3 cut(s)	240, 301, 910
BspHI	TCATGA	3 cut(s)	474, 1039, 1154
BspLI	GGNNCC	4 cut(s)	466, 703, 767, 949
BspMAI	CTGCAG	1 cut(s)	778
BspOI	GCTAGC	2 cut(s)	287, 525
BspPI	GGATC	1 cut(s)	412
BspT107I	GGYRCC	1 cut(s)	701
BspTI	CTTAAG	1 cut(s)	1112
BsrBI	CCGCTC	2 cut(s)	462, 896
BsrDI	GCAATG	1 cut(s)	168
BsrGI	TGTACA	1 cut(s)	99
BsrI	ACTGG	3 cut(s)	566, 720, 879
BssECI	CCNNGG	2 cut(s)	66, 931
BssMI	GATC	7 cut(s)	183, 417, 438, 495, 675, 882, 1036
BssNAI	GTATAC	1 cut(s)	646
BssT1I	CCWWGG	1 cut(s)	66
Bst1107I	GTATAC	1 cut(s)	646
Bst2UI	CCWGG	2 cut(s)	149, 932
Bst4CI	ACNGT	4 cut(s)	448, 457, 577, 1084
BstAFI	CTTAAG	1 cut(s)	1112
BstAPI	GCANNNNNTGC	2 cut(s)	332, 539
BstAUI	TGTACA	1 cut(s)	99
BstBAI	YACGTR	1 cut(s)	817
BstC8I	GCNNGC	2 cut(s)	285, 523
BstDEI	CTNAG	3 cut(s)	248, 288, 918
BstDSI	CCRYGG	1 cut(s)	66
BstF5I	GGATG	1 cut(s)	102
BstKTI	GATC	7 cut(s)	186, 420, 441, 498, 678, 885, 1039
BstMBI	GATC	7 cut(s)	183, 417, 438, 495, 675, 882, 1036
BstMCI	CGRYCG	1 cut(s)	498
BstMWI	GCNNNNNNNGC	7 cut(s)	117, 185, 194, 332, 539, 899, 902
BstNI	CCWGG	2 cut(s)	149, 932
BstSCI	CCNGG	2 cut(s)	147, 930
BstSFI	CTRYAG	2 cut(s)	157, 774
BstSLI	GKGCMC	1 cut(s)	517
BstV1I	GCAGC	3 cut(s)	760, 788, 1090
BstX2I	RGATCY	1 cut(s)	417
BstYI	RGATCY	1 cut(s)	417
BstZ17I	GTATAC	1 cut(s)	646
BsuRI	GGCC	6 cut(s)	65, 492, 846, 878, 969, 1010
BtgI	CCRYGG	1 cut(s)	66
BtsCI	GGATG	1 cut(s)	102
BtsI	GCAGTG	3 cut(s)	342, 666, 888
BtsIMutI	CAGTG	7 cut(s)	342, 559, 573, 666, 713, 872, 888
Cac8I	GCNNGC	2 cut(s)	285, 523
CciI	TCATGA	3 cut(s)	474, 1039, 1154
Cfr13I	GGNCC	4 cut(s)	491, 606, 845, 948
CseI	GACGC	1 cut(s)	415
Csp6I	GTAC	1 cut(s)	100
CviQI	GTAC	1 cut(s)	100
DdeI	CTNAG	3 cut(s)	248, 288, 918
DpnI	GATC	7 cut(s)	185, 419, 440, 497, 677, 884, 1038
DpnII	GATC	7 cut(s)	183, 417, 438, 495, 675, 882, 1036
EaeI	YGGCCR	2 cut(s)	63, 876
EciI	GGCGGA	1 cut(s)	917
Ecl136II	GAGCTC	1 cut(s)	658
Eco130I	CCWWGG	1 cut(s)	66
Eco24I	GRGCYC	1 cut(s)	660
Eco47I	GGWCC	2 cut(s)	606, 948
Eco53kI	GAGCTC	1 cut(s)	658
Eco88I	CYCGRG	1 cut(s)	272
EcoICRI	GAGCTC	1 cut(s)	658
EcoO109I	RGGNCCY	1 cut(s)	845
EcoRI	GAATTC	1 cut(s)	503
EcoRII	CCWGG	2 cut(s)	147, 930
EcoT14I	CCWWGG	1 cut(s)	66
EcoT38I	GRGCYC	1 cut(s)	660
ErhI	CCWWGG	1 cut(s)	66
FalI	AAGNNNNNCTT	2 cut(s)	44, 76
FaqI	GGGAC	2 cut(s)	58, 961
FbaI	TGATCA	2 cut(s)	882, 1036
FblI	GTMKAC	1 cut(s)	645
Fnu4HI	GCNGC	5 cut(s)	774, 777, 894, 903, 1104
FokI	GGATG	1 cut(s)	109
FriOI	GRGCYC	1 cut(s)	660
Fsp4HI	GCNGC	5 cut(s)	774, 777, 894, 903, 1104
FspBI	CTAG	6 cut(s)	284, 423, 522, 587, 762, 899
GluI	GCNGC	5 cut(s)	774, 777, 894, 903, 1104
GsaI	CCCAGC	2 cut(s)	653, 757
HaeIII	GGCC	6 cut(s)	65, 492, 846, 878, 969, 1010
HapII	CCGG	1 cut(s)	609
HgaI	GACGC	1 cut(s)	415
HinfI	GANTC	3 cut(s)	232, 758, 1151
HpaII	CCGG	1 cut(s)	609
HphI	GGTGA	2 cut(s)	445, 448
Hpy166II	GTNNAC	3 cut(s)	515, 646, 872
Hpy188I	TCNGA	4 cut(s)	86, 291, 443, 919
Hpy188III	TCNNGA	8 cut(s)	206, 247, 272, 412, 475, 801, 1040, 1155
Hpy8I	GTNNAC	3 cut(s)	515, 646, 872
Hpy99I	CGWCG	1 cut(s)	431
HpyAV	CCTTC	5 cut(s)	202, 379, 634, 692, 829
HpyCH4III	ACNGT	4 cut(s)	448, 457, 577, 1084
HpyCH4IV	ACGT	2 cut(s)	816, 1003
HpyCH4V	TGCA	7 cut(s)	79, 92, 515, 533, 776, 809, 820
HpyF10VI	GCNNNNNNNGC	7 cut(s)	117, 185, 194, 332, 539, 899, 902
HpyF3I	CTNAG	3 cut(s)	248, 288, 918
HpySE526I	ACGT	2 cut(s)	816, 1003
Ksp22I	TGATCA	2 cut(s)	882, 1036
Kzo9I	GATC	7 cut(s)	183, 417, 438, 495, 675, 882, 1036
LmnI	GCTCC	3 cut(s)	464, 588, 771
Lsp1109I	GCAGC	3 cut(s)	760, 788, 1090
LweI	GCATC	1 cut(s)	1090
MaeI	CTAG	6 cut(s)	284, 423, 522, 587, 762, 899
MaeII	ACGT	2 cut(s)	816, 1003
MaeIII	GTNAC	1 cut(s)	856
MalI	GATC	7 cut(s)	185, 419, 440, 497, 677, 884, 1038
MbiI	CCGCTC	2 cut(s)	462, 896
MboI	GATC	7 cut(s)	183, 417, 438, 495, 675, 882, 1036
MboII	GAAGA	3 cut(s)	235, 427, 607
MflI	RGATCY	1 cut(s)	417
MhlI	GDGCHC	2 cut(s)	517, 660
MlsI	TGGCCA	2 cut(s)	65, 878
MluCI	AATT	8 cut(s)	80, 406, 503, 804, 942, 1043, 1131, 1137
MluNI	TGGCCA	2 cut(s)	65, 878
MlyI	GAGTC	1 cut(s)	226
MmeI	TCCRAC	1 cut(s)	375
MnlI	CCTC	4 cut(s)	365, 547, 980, 1021
Mox20I	TGGCCA	2 cut(s)	65, 878
MscI	TGGCCA	2 cut(s)	65, 878
MseI	TTAA	3 cut(s)	122, 1113, 1140
MslI	CAYNNNNRTG	2 cut(s)	473, 578
Msp20I	TGGCCA	2 cut(s)	65, 878
MspCI	CTTAAG	1 cut(s)	1112
MspI	CCGG	1 cut(s)	609
MspR9I	CCNGG	2 cut(s)	149, 932
MvaI	CCWGG	2 cut(s)	149, 932
MwoI	GCNNNNNNNGC	7 cut(s)	117, 185, 194, 332, 539, 899, 902
NcoI	CCATGG	1 cut(s)	66
NdeII	GATC	7 cut(s)	183, 417, 438, 495, 675, 882, 1036
NheI	GCTAGC	2 cut(s)	283, 521
NlaIV	GGNNCC	4 cut(s)	466, 703, 767, 949
NmeAIII	GCCGAG	1 cut(s)	549
NmuCI	GTSAC	1 cut(s)	856
PaeR7I	CTCGAG	1 cut(s)	272
PagI	TCATGA	3 cut(s)	474, 1039, 1154
PfeI	GAWTC	2 cut(s)	758, 1151
PkrI	GCNGC	5 cut(s)	775, 778, 895, 904, 1105
Ple19I	CGATCG	1 cut(s)	498
PleI	GAGTC	1 cut(s)	226
PpsI	GAGTC	1 cut(s)	226
Ppu21I	YACGTR	1 cut(s)	817
Psp124BI	GAGCTC	1 cut(s)	660
Psp1406I	AACGTT	1 cut(s)	1003
Psp6I	CCWGG	2 cut(s)	147, 930
PspFI	CCCAGC	2 cut(s)	649, 753
PspGI	CCWGG	2 cut(s)	147, 930
PspN4I	GGNNCC	4 cut(s)	466, 703, 767, 949
PspPI	GGNCC	4 cut(s)	491, 606, 845, 948
PsrI	GAACNNNNNNTAC	2 cut(s)	988, 1020
PstI	CTGCAG	1 cut(s)	778
PsuI	RGATCY	1 cut(s)	417
PvuI	CGATCG	1 cut(s)	498
RsaI	GTAC	1 cut(s)	101
RsaNI	GTAC	1 cut(s)	100
RseI	CAYNNNNRTG	2 cut(s)	473, 578
SacI	GAGCTC	1 cut(s)	660
SaqAI	TTAA	3 cut(s)	122, 1113, 1140
SatI	GCNGC	5 cut(s)	774, 777, 894, 903, 1104
Sau3AI	GATC	7 cut(s)	183, 417, 438, 495, 675, 882, 1036
Sau96I	GGNCC	4 cut(s)	491, 606, 845, 948
SchI	GAGTC	1 cut(s)	226
ScrFI	CCNGG	2 cut(s)	149, 932
SduI	GDGCHC	2 cut(s)	517, 660
SfaNI	GCATC	1 cut(s)	1090
SfcI	CTRYAG	2 cut(s)	157, 774
Sfr274I	CTCGAG	1 cut(s)	272
SinI	GGWCC	2 cut(s)	606, 948
SlaI	CTCGAG	1 cut(s)	272
SmiMI	CAYNNNNRTG	2 cut(s)	473, 578
SmlI	CTYRAG	2 cut(s)	272, 1112
SmoI	CTYRAG	2 cut(s)	272, 1112
Sse9I	AATT	8 cut(s)	80, 406, 503, 804, 942, 1043, 1131, 1137
SsiI	CCGC	5 cut(s)	462, 546, 894, 903, 928
SspMI	CTAG	6 cut(s)	284, 423, 522, 587, 762, 899
SstI	GAGCTC	1 cut(s)	660
StyD4I	CCNGG	2 cut(s)	147, 930
StyI	CCWWGG	1 cut(s)	66
TaaI	ACNGT	4 cut(s)	448, 457, 577, 1084
TaiI	ACGT	2 cut(s)	819, 1006
TaqI	TCGA	3 cut(s)	207, 273, 723
TasI	AATT	8 cut(s)	80, 406, 503, 804, 942, 1043, 1131, 1137
TatI	WGTACW	1 cut(s)	99
TauI	GCSGC	2 cut(s)	896, 905
TfiI	GAWTC	2 cut(s)	758, 1151
Tru1I	TTAA	3 cut(s)	122, 1113, 1140
Tru9I	TTAA	3 cut(s)	122, 1113, 1140
TscAI	CASTG	7 cut(s)	349, 566, 580, 673, 720, 879, 895
TseFI	GTSAC	1 cut(s)	856
TseI	GCWGC	3 cut(s)	773, 776, 1103
Tsp45I	GTSAC	1 cut(s)	856
TspDTI	ATGAA	9 cut(s)	36, 149, 157, 361, 496, 607, 848, 1031, 1056
TspRI	CASTG	7 cut(s)	349, 566, 580, 673, 720, 879, 895
Vha464I	CTTAAG	1 cut(s)	1112
VneI	GTGCAC	1 cut(s)	513
VpaK11BI	GGWCC	2 cut(s)	606, 948
XapI	RAATTY	2 cut(s)	503, 1131
XhoI	CTCGAG	1 cut(s)	272
XmiI	GTMKAC	1 cut(s)	645
XspI	CTAG	6 cut(s)	284, 423, 522, 587, 762, 899

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.