Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0003116

Physical Location & Seq

Genomic Coordinates Reverse (-)

41418306 .. 41420591

Gene Structure 2286 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G500400.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1206 bp

ATGGGAGACCAAATTGCAAAGGGAAAATTAGCTCTATTTCTTTACAAGATAAAGCCTTACTTGGCTATGATCTCTTTGCAATTTGGGTATGCAGGCATGTACATTATCAGCATGGTTGGTTTGAAGCGTGGCATGAGCCACTTTGTCCTTGCTGTGTACAGGCATTTGATTGCCGTGGTTGTGATTGCCCCATTCGCACTTGTTCTTGAACGGTCTCTATATTTCTCTCTTTTCCTTCATCTCTTCTCTTCCACAAAGAGACATGCATGCGTGAAAATAAGGCCAAAACTGACCCTACCGATCTTCCTAAGAATAATGGTGCTTGGTTTTCTCGAGCCAGTGTTTGCTCAGAATTTATACTTTGTGGGAATGACATACACCTCAGCAACATTTGCATCTGCCACTGCTAATATTCTCCCTGCCATTACCTTTATTTTTGCACTTCTTTTCAGGTTAGAAAAAATCAATTTCAAGAAGATCCCAAGTGTAGCAAAGGTGATCGGAACTGTAATCACGGTCATGGGAGCAATGGTGATGACATGGTACAAAGGTCCTATTGTCGAAATCATAAGGGGACAAACACAAAGCCACCACAACACCACCGCTTTATCCACTGAACAACATTGGATCACCGGCACTTTCATGCTCCTAGCCCGTTGCTGTGGTTGGTCTGGTTTCTTCATCCTACAATCGTTTACGCTAAAGCTATACCCAGCAGAGCTCTCTCTCACTGCTTTGATATGCTTAATGGGTGCATTGGAAGGTGCCGTAGCCACGTTCATACTTGAACACAACATGAGTGTTTGGGTTATAGGCTGGGACTCCAGGCTACTTGCTGCTGGTTACTCTGGGGTGGTTTGCTCTGGAATTGCATATTACGTGCAAGGTGTCGTGATGAAGGAACAAGGTCCAGTTTTCGTGACAGCGTTTAGCCCGCTGGCCATGATCATCACCGCCGCCCTAGCCGCCATCATTTTAGCCGAGCAAATCCACCTTGGAAGCATACTTGGAACTATTCTCATAGTCATTGGCCTCTATGCTGTTGTTTGGGGGAAAAGCAAAGATCCCACAGCCTCCTCACTGTTGATCGAAGATGAGAAAGTTGTTGCTCTTGAACTACCAGTCACTGTTGATAACAAAACTGATGGTACTGGACCTCCAGGGGACTTCATCAAGGTTCCAATTAAAGCACAAGAATCATGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003333 GO:0003674 GO:0005215 GO:0005342 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006820 GO:0006865 GO:0008150 GO:0008509 GO:0008514 GO:0015075 GO:0015171 GO:0015318 GO:0015711 GO:0015849 GO:0016020 GO:0022857 GO:0032973 GO:0034220 GO:0042592 GO:0043090 GO:0044464 GO:0046942 GO:0046943 GO:0048878 GO:0050801 GO:0051179 GO:0051234 GO:0055081 GO:0055085 GO:0065007 GO:0065008 GO:0071702 GO:0071705 GO:0071944 GO:0080144 GO:0098656 GO:0140115 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EamA

Protein Analysis

402

Amino Acids

43.89

Weight (kDa)

9.24

Isoelectric Point (pI)

34.98

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003116)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G21890 AT1G21890 AT1G44800 AT4G08300
fragaria_vesca	FvH4_2g26691 FvH4_2g26691 FvH4_2g26691 FvH4_2g26700
malus_domestica	MD00G1157200.v1.1 MD15G1351700.v1.1 MD15G1351800.v1.1
prunus_persica	Prupe.1G500400_v2.0.a1 Prupe.1G500400_v2.0.a1 Prupe.1G500500_v2.0.a1
pyrus_communis	pycom08g14190 pycom15g31510
rosa_chinensis	RchiOBHm_Chr6g0295541 RchiOBHm_Chr6g0295571
rosa_laevigata	RLG00000011789 RLG00000011792
rosa_multiflora	Rmu_sc0005000.1_g000009 Rmu_sc0005000.1_g000012
rosa_roxburghii	Rroxscaffold_7G00172360 Rroxscaffold_7G00172380
rosa_rugosa	Rorug06G0251800 Rorug06G0251900 Rorug06G0252000 Rorug06G0252100
rosa_samantha	Rh6AG365000 Rh6AG365200 Rh6BG373400 Rh6CG379600 Rh6CG379800 Rh6DG366100 Rh6DG366400
rosa_wichuraiana	Rw6G031880 Rw6G031890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	764
AciI	CCGC	5 cut(s)	603, 935, 954, 957, 966
AclWI	GGATC	3 cut(s)	472, 635, 1058
AcoI	YGGCCR	1 cut(s)	939
AcsI	RAATTY	1 cut(s)	352
AfaI	GTAC	4 cut(s)	101, 158, 545, 1150
AgsI	TTSAA	5 cut(s)	124, 209, 472, 788, 1115
AjnI	CCWGG	2 cut(s)	824, 1159
AluBI	AGCT	3 cut(s)	32, 706, 721
AluI	AGCT	3 cut(s)	32, 706, 721
Alw21I	GWGCWC	1 cut(s)	723
Alw26I	GTCTC	2 cut(s)	219, 253
AlwI	GGATC	3 cut(s)	472, 635, 1058
AlwNI	CAGNNNCTG	1 cut(s)	1127
Ama87I	CYCGRG	1 cut(s)	332
AoxI	GGCC	3 cut(s)	281, 939, 1030
ApeKI	GCWGC	1 cut(s)	836
ApoI	RAATTY	1 cut(s)	352
AspS9I	GGNCC	3 cut(s)	551, 908, 1154
AsuHPI	GGTGA	4 cut(s)	508, 544, 622, 943
AvaI	CYCGRG	1 cut(s)	332
AvaII	GGWCC	3 cut(s)	551, 908, 1154
BaeI	ACNNNNGTAYC	2 cut(s)	535, 568
BalI	TGGCCA	1 cut(s)	941
BanI	GGYRCC	1 cut(s)	764
BanII	GRGCYC	1 cut(s)	723
Bbv12I	GWGCWC	1 cut(s)	723
BbvCI	CCTCAGC	1 cut(s)	382
BbvI	GCAGC	1 cut(s)	823
BccI	CCATC	2 cut(s)	977, 1139
BceAI	ACGGC	2 cut(s)	158, 752
BciT130I	CCWGG	2 cut(s)	826, 1161
BclI	TGATCA	1 cut(s)	945
BcoDI	GTCTC	2 cut(s)	219, 253
BfaI	CTAG	2 cut(s)	650, 962
BisI	GCNGC	3 cut(s)	837, 957, 966
BlsI	GCNGC	3 cut(s)	838, 958, 967
Bme1390I	CCNGG	2 cut(s)	826, 1161
Bme18I	GGWCC	3 cut(s)	551, 908, 1154
BmeT110I	CYCGRG	1 cut(s)	332
BmgT120I	GGNCC	3 cut(s)	551, 908, 1154
BmiI	GGNNCC	2 cut(s)	766, 1179
BmrFI	CCNGG	2 cut(s)	826, 1161
BmsI	GCATC	1 cut(s)	404
BpmI	CTGGAG	2 cut(s)	808, 1143
Bpu10I	CCTNAGC	1 cut(s)	382
BsaAI	YACGTR	1 cut(s)	880
BsaI	GGTCTC	1 cut(s)	219
BsaJI	CCNNGG	3 cut(s)	174, 994, 1160
BsaXI	ACNNNNNCTCC	4 cut(s)	516, 546, 1141, 1171
Bse118I	RCCGGY	1 cut(s)	632
Bse1I	ACTGG	4 cut(s)	338, 911, 1121, 1156
Bse3DI	GCAATG	1 cut(s)	534
BseBI	CCWGG	2 cut(s)	826, 1161
BseDI	CCNNGG	3 cut(s)	174, 994, 1160
BseGI	GGATG	1 cut(s)	681
BseMI	GCAATG	1 cut(s)	534
BseMII	CTCAG	2 cut(s)	362, 396
BseNI	ACTGG	4 cut(s)	338, 911, 1121, 1156
BseRI	GAGGAG	1 cut(s)	1066
BseXI	GCAGC	1 cut(s)	823
BseYI	CCCAGC	2 cut(s)	712, 816
BshFI	GGCC	3 cut(s)	283, 941, 1032
BshNI	GGYRCC	1 cut(s)	764
BsiHKAI	GWGCWC	1 cut(s)	723
BsiHKCI	CYCGRG	1 cut(s)	332
BsiSI	CCGG	1 cut(s)	633
BslFI	GGGAC	3 cut(s)	588, 833, 1178
BsmAI	GTCTC	2 cut(s)	219, 253
BsmFI	GGGAC	3 cut(s)	588, 833, 1178
BsnI	GGCC	3 cut(s)	283, 941, 1032
Bso31I	GGTCTC	1 cut(s)	219
BsoBI	CYCGRG	1 cut(s)	332
Bsp1286I	GDGCHC	1 cut(s)	723
Bsp1407I	TGTACA	2 cut(s)	99, 156
Bsp143I	GATC	8 cut(s)	69, 300, 477, 498, 627, 945, 1063, 1086
BspACI	CCGC	5 cut(s)	603, 935, 954, 957, 966
BspANI	GGCC	3 cut(s)	283, 941, 1032
BspCNI	CTCAG	2 cut(s)	361, 395
BspLI	GGNNCC	2 cut(s)	766, 1179
BspPI	GGATC	3 cut(s)	472, 635, 1058
BspT107I	GGYRCC	1 cut(s)	764
BspTNI	GGTCTC	1 cut(s)	219
BsrDI	GCAATG	1 cut(s)	534
BsrFI	RCCGGY	1 cut(s)	632
BsrGI	TGTACA	2 cut(s)	99, 156
BsrI	ACTGG	4 cut(s)	338, 911, 1121, 1156
BssAI	RCCGGY	1 cut(s)	632
BssECI	CCNNGG	3 cut(s)	174, 994, 1160
BssMI	GATC	8 cut(s)	69, 300, 477, 498, 627, 945, 1063, 1086
BssT1I	CCWWGG	1 cut(s)	994
Bst2UI	CCWGG	2 cut(s)	826, 1161
Bst4CI	ACNGT	5 cut(s)	213, 508, 517, 1083, 1129
Bst6I	CTCTTC	2 cut(s)	248, 253
BstAPI	GCANNNNNTGC	1 cut(s)	392
BstAUI	TGTACA	2 cut(s)	99, 156
BstBAI	YACGTR	1 cut(s)	880
BstC8I	GCNNGC	4 cut(s)	94, 268, 935, 939
BstDEI	CTNAG	3 cut(s)	308, 348, 382
BstDSI	CCRYGG	1 cut(s)	174
BstF5I	GGATG	1 cut(s)	681
BstKTI	GATC	8 cut(s)	72, 303, 480, 501, 630, 948, 1066, 1089
BstMAI	GTCTC	2 cut(s)	219, 253
BstMBI	GATC	8 cut(s)	69, 300, 477, 498, 627, 945, 1063, 1086
BstMWI	GCNNNNNNNGC	4 cut(s)	194, 392, 962, 965
BstNI	CCWGG	2 cut(s)	826, 1161
BstNSI	RCATGY	3 cut(s)	100, 266, 270
BstSCI	CCNGG	2 cut(s)	824, 1159
BstV1I	GCAGC	1 cut(s)	823
BstX2I	RGATCY	2 cut(s)	477, 1063
BstYI	RGATCY	2 cut(s)	477, 1063
BsuRI	GGCC	3 cut(s)	283, 941, 1032
BtgI	CCRYGG	1 cut(s)	174
BtsCI	GGATG	1 cut(s)	681
BtsI	GCAGTG	2 cut(s)	402, 729
BtsIMutI	CAGTG	6 cut(s)	345, 402, 612, 729, 1079, 1125
Cac8I	GCNNGC	4 cut(s)	94, 268, 935, 939
CaiI	CAGNNNCTG	1 cut(s)	1127
Cfr10I	RCCGGY	1 cut(s)	632
Cfr13I	GGNCC	3 cut(s)	551, 908, 1154
Csp6I	GTAC	4 cut(s)	100, 157, 544, 1149
CviQI	GTAC	4 cut(s)	100, 157, 544, 1149
DdeI	CTNAG	3 cut(s)	308, 348, 382
DpnI	GATC	8 cut(s)	71, 302, 479, 500, 629, 947, 1065, 1088
DpnII	GATC	8 cut(s)	69, 300, 477, 498, 627, 945, 1063, 1086
EaeI	YGGCCR	1 cut(s)	939
Eam1104I	CTCTTC	2 cut(s)	248, 253
EarI	CTCTTC	2 cut(s)	248, 253
Ecl136II	GAGCTC	1 cut(s)	721
Eco130I	CCWWGG	1 cut(s)	994
Eco24I	GRGCYC	1 cut(s)	723
Eco31I	GGTCTC	1 cut(s)	219
Eco47I	GGWCC	3 cut(s)	551, 908, 1154
Eco53kI	GAGCTC	1 cut(s)	721
Eco88I	CYCGRG	1 cut(s)	332
EcoICRI	GAGCTC	1 cut(s)	721
EcoO109I	RGGNCCY	1 cut(s)	551
EcoRII	CCWGG	2 cut(s)	824, 1159
EcoT14I	CCWWGG	1 cut(s)	994
EcoT22I	ATGCAT	1 cut(s)	268
EcoT38I	GRGCYC	1 cut(s)	723
ErhI	CCWWGG	1 cut(s)	994
FalI	AAGNNNNNCTT	2 cut(s)	44, 76
FaqI	GGGAC	3 cut(s)	588, 833, 1178
FauI	CCCGC	1 cut(s)	942
FbaI	TGATCA	1 cut(s)	945
Fnu4HI	GCNGC	3 cut(s)	837, 957, 966
FokI	GGATG	1 cut(s)	668
FriOI	GRGCYC	1 cut(s)	723
Fsp4HI	GCNGC	3 cut(s)	837, 957, 966
FspBI	CTAG	2 cut(s)	650, 962
GluI	GCNGC	3 cut(s)	837, 957, 966
GsaI	CCCAGC	2 cut(s)	716, 820
GsuI	CTGGAG	2 cut(s)	808, 1143
HaeIII	GGCC	3 cut(s)	283, 941, 1032
HapII	CCGG	1 cut(s)	633
HinfI	GANTC	2 cut(s)	821, 1196
HpaII	CCGG	1 cut(s)	633
HphI	GGTGA	4 cut(s)	508, 544, 622, 943
Hpy166II	GTNNAC	2 cut(s)	157, 696
Hpy188I	TCNGA	2 cut(s)	351, 503
Hpy188III	TCNNGA	7 cut(s)	206, 332, 472, 864, 892, 919, 1112
Hpy8I	GTNNAC	2 cut(s)	157, 696
HpyAV	CCTTC	3 cut(s)	245, 755, 892
HpyCH4III	ACNGT	5 cut(s)	213, 508, 517, 1083, 1129
HpyCH4IV	ACGT	2 cut(s)	776, 879
HpyCH4V	TGCA	9 cut(s)	17, 79, 92, 266, 395, 440, 755, 872, 883
HpyF10VI	GCNNNNNNNGC	4 cut(s)	194, 392, 962, 965
HpyF3I	CTNAG	3 cut(s)	308, 348, 382
HpySE526I	ACGT	2 cut(s)	776, 879
Ksp22I	TGATCA	1 cut(s)	945
Kzo9I	GATC	8 cut(s)	69, 300, 477, 498, 627, 945, 1063, 1086
LmnI	GCTCC	2 cut(s)	524, 651
Lsp1109I	GCAGC	1 cut(s)	823
LweI	GCATC	1 cut(s)	404
MaeI	CTAG	2 cut(s)	650, 962
MaeII	ACGT	2 cut(s)	776, 879
MaeIII	GTNAC	3 cut(s)	842, 919, 1123
MalI	GATC	8 cut(s)	71, 302, 479, 500, 629, 947, 1065, 1088
MboI	GATC	8 cut(s)	69, 300, 477, 498, 627, 945, 1063, 1086
MboII	GAAGA	6 cut(s)	235, 240, 295, 487, 670, 1103
MflI	RGATCY	2 cut(s)	477, 1063
MhlI	GDGCHC	1 cut(s)	723
MlsI	TGGCCA	1 cut(s)	941
MluCI	AATT	7 cut(s)	12, 26, 80, 352, 466, 867, 1182
MluNI	TGGCCA	1 cut(s)	941
MlyI	GAGTC	1 cut(s)	815
MnlI	CCTC	5 cut(s)	391, 1043, 1084, 1087, 1167
Mox20I	TGGCCA	1 cut(s)	941
Mph1103I	ATGCAT	1 cut(s)	268
MscI	TGGCCA	1 cut(s)	941
MseI	TTAA	2 cut(s)	746, 1185
MslI	CAYNNNNRTG	2 cut(s)	518, 641
Msp20I	TGGCCA	1 cut(s)	941
MspA1I	CMGCKG	1 cut(s)	937
MspI	CCGG	1 cut(s)	633
MspR9I	CCNGG	2 cut(s)	826, 1161
MvaI	CCWGG	2 cut(s)	826, 1161
MwoI	GCNNNNNNNGC	4 cut(s)	194, 392, 962, 965
NdeII	GATC	8 cut(s)	69, 300, 477, 498, 627, 945, 1063, 1086
NlaIV	GGNNCC	2 cut(s)	766, 1179
NmeAIII	GCCGAG	1 cut(s)	1006
NmuCI	GTSAC	2 cut(s)	919, 1123
NsiI	ATGCAT	1 cut(s)	268
NspI	RCATGY	3 cut(s)	100, 266, 270
PaeI	GCATGC	1 cut(s)	270
PaeR7I	CTCGAG	1 cut(s)	332
PfeI	GAWTC	1 cut(s)	1196
PkrI	GCNGC	3 cut(s)	838, 958, 967
PleI	GAGTC	1 cut(s)	815
PpsI	GAGTC	1 cut(s)	815
Ppu21I	YACGTR	1 cut(s)	880
PpuMI	RGGWCCY	1 cut(s)	551
Psp124BI	GAGCTC	1 cut(s)	723
Psp5II	RGGWCCY	1 cut(s)	551
Psp6I	CCWGG	2 cut(s)	824, 1159
PspFI	CCCAGC	2 cut(s)	712, 816
PspGI	CCWGG	2 cut(s)	824, 1159
PspN4I	GGNNCC	2 cut(s)	766, 1179
PspPI	GGNCC	3 cut(s)	551, 908, 1154
PspPPI	RGGWCCY	1 cut(s)	551
PstNI	CAGNNNCTG	1 cut(s)	1127
PsuI	RGATCY	2 cut(s)	477, 1063
RsaI	GTAC	4 cut(s)	101, 158, 545, 1150
RsaNI	GTAC	4 cut(s)	100, 157, 544, 1149
RseI	CAYNNNNRTG	2 cut(s)	518, 641
SacI	GAGCTC	1 cut(s)	723
SaqAI	TTAA	2 cut(s)	746, 1185
SatI	GCNGC	3 cut(s)	837, 957, 966
Sau3AI	GATC	8 cut(s)	69, 300, 477, 498, 627, 945, 1063, 1086
Sau96I	GGNCC	3 cut(s)	551, 908, 1154
SchI	GAGTC	1 cut(s)	815
ScrFI	CCNGG	2 cut(s)	826, 1161
SduI	GDGCHC	1 cut(s)	723
SfaNI	GCATC	1 cut(s)	404
Sfr274I	CTCGAG	1 cut(s)	332
SinI	GGWCC	3 cut(s)	551, 908, 1154
SlaI	CTCGAG	1 cut(s)	332
SmiMI	CAYNNNNRTG	2 cut(s)	518, 641
SmlI	CTYRAG	1 cut(s)	332
SmoI	CTYRAG	1 cut(s)	332
SphI	GCATGC	1 cut(s)	270
Sse9I	AATT	7 cut(s)	12, 26, 80, 352, 466, 867, 1182
SsiI	CCGC	5 cut(s)	603, 935, 954, 957, 966
SspI	AATATT	1 cut(s)	412
SspMI	CTAG	2 cut(s)	650, 962
SstI	GAGCTC	1 cut(s)	723
StyD4I	CCNGG	2 cut(s)	824, 1159
StyI	CCWWGG	1 cut(s)	994
TaaI	ACNGT	5 cut(s)	213, 508, 517, 1083, 1129
TaiI	ACGT	2 cut(s)	779, 882
TaqI	TCGA	3 cut(s)	333, 561, 1089
TasI	AATT	7 cut(s)	12, 26, 80, 352, 466, 867, 1182
TatI	WGTACW	2 cut(s)	99, 156
TauI	GCSGC	2 cut(s)	959, 968
TfiI	GAWTC	1 cut(s)	1196
Tru1I	TTAA	2 cut(s)	746, 1185
Tru9I	TTAA	2 cut(s)	746, 1185
TscAI	CASTG	6 cut(s)	345, 409, 619, 736, 1086, 1132
TseFI	GTSAC	2 cut(s)	919, 1123
TseI	GCWGC	1 cut(s)	836
Tsp45I	GTSAC	2 cut(s)	919, 1123
TspDTI	ATGAA	6 cut(s)	227, 631, 670, 769, 911, 1159
TspRI	CASTG	6 cut(s)	345, 409, 619, 736, 1086, 1132
VpaK11BI	GGWCC	3 cut(s)	551, 908, 1154
XapI	RAATTY	1 cut(s)	352
XceI	RCATGY	3 cut(s)	100, 266, 270
XhoI	CTCGAG	1 cut(s)	332
XspI	CTAG	2 cut(s)	650, 962
Zsp2I	ATGCAT	1 cut(s)	268

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.