Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0003116

Physical Location & Seq

Genomic Coordinates Reverse (-)

39762695 .. 39763841

Gene Structure 1147 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0251900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1023 bp

ATGGAGTTCATCAACCACAGCAAATGTATCTGTTTGGCCTTGATCCTCATATTGGGGGCATGGTCTTCTGAAGCCACCTCTCGCAGCCTGCAAGATGCATTAATGTATGGGAGATACGAGCAATGGATGGCTCGTTACGGACGCGTATATAGTGACACTGATGAGAAGGAGAAGCGCTTCAAGATATTCAAGGAAAATGTAGCATTTATAGAATCTTCCAATGACGAAGCAAACAAACCTTACAAACTAAGTGTGAATGGATTTGCAGACCTTACAAATGAAGAGTTCACAGCCTCAAGAAATCGATTTAAGGCTCATGAATGCTCCACAAAGACCACTTCTTTCAAATATGAAAATGCTACTGTGCCAGCAACAATGGACTGGAGACAGAAAGGAGCTGTTACCCCAATCAAGGACCAAGGCCAATGTGGTTGCTGTTGGGCGTTCTCAGCAGTGGCAGCCATGGAAGGAATTACACAACTCACAACTGGTAAACTGATTTCCTTGTCCGAGCAAGAGCTGGTTGACTGTGATGTTAATGGTGAAGACCAAGGCTGTGAGGGTGGCCTCATGGATGATGCCTTTCAGTTCATCAATCAAAACCATGGACTAAGTACCGAGGCCAATTATCCCTACACAGGTGTTGATGGTACATGCAATGCTAAGAAGGAAGCAAACCATGCAGCCTCGATAACTGGCCACGAAGATGTGCCTGCAAATAGTGAAAGCGCCCTACTTAATGCTGTTGCTAATCAACCTATTTCTGTTGCCATTGATGCCAGCGGATCTGATTTCCAATTCTATTCAAGTGGTGTTTTCATAGGAACATGCGGAACGAGCCTGGACCATGGTGTTACCGCTGTTGGTTATGGTGTCAGCGATGATGGGACTAAGTATTGGCTGGTGAAGAACTCATGGGGAGCAGAATGGGGTGAACAAGGGTACATAAGAATGCAAAGAGATGTTGATGCACCGGAAGGCCTCTGTGGTATTGCTATGGAAGCCTCTTATCCAACTGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003333 GO:0003674 GO:0005215 GO:0005342 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0005887 GO:0005938 GO:0006810 GO:0006811 GO:0006820 GO:0006865 GO:0007154 GO:0007165 GO:0008150 GO:0008509 GO:0008514 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009755 GO:0009987 GO:0010033 GO:0015075 GO:0015171 GO:0015179 GO:0015318 GO:0015562 GO:0015711 GO:0015807 GO:0015849 GO:0016020 GO:0016021 GO:0022857 GO:0023052 GO:0031224 GO:0031226 GO:0032870 GO:0032973 GO:0034220 GO:0034639 GO:0042221 GO:0042592 GO:0043090 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0046942 GO:0046943 GO:0048878 GO:0050789 GO:0050794 GO:0050801 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0055081 GO:0055085 GO:0065007 GO:0065008 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0071702 GO:0071705 GO:0071944 GO:0080144 GO:0098656 GO:0099568 GO:0140115 GO:1902475 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EamA

Protein Analysis

340

Amino Acids

37.13

Weight (kDa)

4.68

Isoelectric Point (pI)

21.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Inhibitor_I29	PF08246	39 - 96	1.6e-19	Cathepsin propeptide inhibitor domain (I29)
Peptidase_C1	PF00112	122 - 339	1.2e-84	Papain family cysteine protease

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003116)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G21890 AT1G21890 AT1G44800 AT4G08300
fragaria_vesca	FvH4_2g26691 FvH4_2g26691 FvH4_2g26691 FvH4_2g26700
malus_domestica	MD00G1157200.v1.1 MD15G1351700.v1.1 MD15G1351800.v1.1
prunus_persica	Prupe.1G500400_v2.0.a1 Prupe.1G500400_v2.0.a1 Prupe.1G500500_v2.0.a1
pyrus_communis	pycom08g14190 pycom15g31510
rosa_chinensis	RchiOBHm_Chr6g0295541 RchiOBHm_Chr6g0295571
rosa_laevigata	RLG00000011789 RLG00000011792
rosa_multiflora	Rmu_sc0005000.1_g000009 Rmu_sc0005000.1_g000012
rosa_roxburghii	Rroxscaffold_7G00172360 Rroxscaffold_7G00172380
rosa_rugosa	Rorug06G0251800 Rorug06G0251900 Rorug06G0252000 Rorug06G0252100
rosa_samantha	Rh6AG365000 Rh6AG365200 Rh6BG373400 Rh6CG379600 Rh6CG379800 Rh6DG366100 Rh6DG366400
rosa_wichuraiana	Rw6G031880 Rw6G031890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	144
AciI	CCGC	3 cut(s)	783, 831, 858
AclWI	GGATC	2 cut(s)	37, 793
AcoI	YGGCCR	1 cut(s)	697
AcuI	CTGAAG	1 cut(s)	90
AfaI	GTAC	3 cut(s)	616, 652, 944
AfeI	AGCGCT	1 cut(s)	176
AfiI	CCNNNNNNNGG	3 cut(s)	52, 412, 638
AflIII	ACRYGT	1 cut(s)	142
AgsI	TTSAA	4 cut(s)	181, 190, 346, 807
AjnI	CCWGG	1 cut(s)	840
AluBI	AGCT	2 cut(s)	398, 520
AluI	AGCT	2 cut(s)	398, 520
Alw26I	GTCTC	1 cut(s)	379
AlwI	GGATC	2 cut(s)	37, 793
Aor51HI	AGCGCT	1 cut(s)	176
AoxI	GGCC	6 cut(s)	36, 421, 565, 621, 697, 979
ApeKI	GCWGC	3 cut(s)	84, 458, 683
AseI	ATTAAT	1 cut(s)	101
Asp700I	GAANNNNTTC	1 cut(s)	176
AspLEI	GCGC	2 cut(s)	177, 731
AspS9I	GGNCC	2 cut(s)	415, 844
AsuHPI	GGTGA	3 cut(s)	554, 916, 944
AvaII	GGWCC	2 cut(s)	415, 844
BalI	TGGCCA	1 cut(s)	699
BbsI	GAAGAC	2 cut(s)	57, 552
BbvI	GCAGC	3 cut(s)	96, 470, 695
BccI	CCATC	3 cut(s)	121, 641, 878
BciT130I	CCWGG	1 cut(s)	842
BcoDI	GTCTC	1 cut(s)	379
BfoI	RGCGCY	2 cut(s)	178, 732
BisI	GCNGC	3 cut(s)	85, 459, 684
BlsI	GCNGC	3 cut(s)	86, 460, 685
Bme1390I	CCNGG	1 cut(s)	842
Bme18I	GGWCC	2 cut(s)	415, 844
BmgT120I	GGNCC	2 cut(s)	415, 844
BmrFI	CCNGG	1 cut(s)	842
BmsI	GCATC	4 cut(s)	85, 568, 766, 958
BpiI	GAAGAC	2 cut(s)	57, 552
BpmI	CTGGAG	1 cut(s)	403
BpuEI	CTTGAG	1 cut(s)	280
Bsa29I	ATCGAT	1 cut(s)	304
BsaJI	CCNNGG	6 cut(s)	418, 462, 550, 604, 618, 847
BsaWI	WCCGGW	1 cut(s)	973
Bsc4I	CCNNNNNNNGG	3 cut(s)	52, 412, 638
Bse1I	ACTGG	3 cut(s)	386, 493, 700
Bse3DI	GCAATG	2 cut(s)	128, 664
BseBI	CCWGG	1 cut(s)	842
BseCI	ATCGAT	1 cut(s)	304
BseDI	CCNNGG	6 cut(s)	418, 462, 550, 604, 618, 847
BseGI	GGATG	2 cut(s)	132, 580
BseLI	CCNNNNNNNGG	3 cut(s)	52, 412, 638
BseMI	GCAATG	2 cut(s)	128, 664
BseMII	CTCAG	1 cut(s)	462
BseNI	ACTGG	3 cut(s)	386, 493, 700
BseXI	GCAGC	3 cut(s)	96, 470, 695
Bsh1236I	CGCG	1 cut(s)	144
BshFI	GGCC	6 cut(s)	38, 423, 567, 623, 699, 981
BshVI	ATCGAT	1 cut(s)	304
BsiSI	CCGG	1 cut(s)	974
BslFI	GGGAC	1 cut(s)	901
BslI	CCNNNNNNNGG	3 cut(s)	52, 412, 638
BsmAI	GTCTC	1 cut(s)	379
BsmFI	GGGAC	1 cut(s)	901
BsmI	GAATGC	2 cut(s)	326, 957
BsnI	GGCC	6 cut(s)	38, 423, 567, 623, 699, 981
Bsp143I	GATC	2 cut(s)	42, 785
Bsp19I	CCATGG	3 cut(s)	462, 604, 847
BspACI	CCGC	3 cut(s)	783, 831, 858
BspANI	GGCC	6 cut(s)	38, 423, 567, 623, 699, 981
BspCNI	CTCAG	1 cut(s)	461
BspDI	ATCGAT	1 cut(s)	304
BspFNI	CGCG	1 cut(s)	144
BspHI	TCATGA	1 cut(s)	316
BspPI	GGATC	2 cut(s)	37, 793
BsrDI	GCAATG	2 cut(s)	128, 664
BsrI	ACTGG	3 cut(s)	386, 493, 700
BssECI	CCNNGG	6 cut(s)	418, 462, 550, 604, 618, 847
BssMI	GATC	2 cut(s)	42, 785
BssT1I	CCWWGG	5 cut(s)	418, 462, 550, 604, 847
Bst2UI	CCWGG	1 cut(s)	842
Bst4CI	ACNGT	2 cut(s)	364, 530
Bst6I	CTCTTC	1 cut(s)	276
BstAPI	GCANNNNNTGC	1 cut(s)	680
BstC8I	GCNNGC	4 cut(s)	89, 369, 714, 781
BstDEI	CTNAG	5 cut(s)	248, 448, 611, 663, 891
BstDSI	CCRYGG	3 cut(s)	462, 604, 847
BstF5I	GGATG	2 cut(s)	132, 580
BstFNI	CGCG	1 cut(s)	144
BstH2I	RGCGCY	2 cut(s)	178, 732
BstHHI	GCGC	2 cut(s)	177, 731
BstKTI	GATC	2 cut(s)	45, 788
BstMAI	GTCTC	1 cut(s)	379
BstMBI	GATC	2 cut(s)	42, 785
BstMWI	GCNNNNNNNGC	6 cut(s)	449, 458, 680, 776, 837, 1001
BstNI	CCWGG	1 cut(s)	842
BstNSI	RCATGY	2 cut(s)	657, 831
BstSCI	CCNGG	1 cut(s)	840
BstUI	CGCG	1 cut(s)	144
BstV1I	GCAGC	3 cut(s)	96, 470, 695
BstV2I	GAAGAC	2 cut(s)	57, 552
BstX2I	RGATCY	1 cut(s)	785
BstYI	RGATCY	1 cut(s)	785
Bsu15I	ATCGAT	1 cut(s)	304
BsuRI	GGCC	6 cut(s)	38, 423, 567, 623, 699, 981
BsuTUI	ATCGAT	1 cut(s)	304
BtgI	CCRYGG	3 cut(s)	462, 604, 847
BtgZI	GCGATG	1 cut(s)	894
BtsCI	GGATG	2 cut(s)	132, 580
BtsI	GCAGTG	1 cut(s)	459
BtsIMutI	CAGTG	2 cut(s)	156, 459
Cac8I	GCNNGC	4 cut(s)	89, 369, 714, 781
CciI	TCATGA	1 cut(s)	316
CfoI	GCGC	2 cut(s)	177, 731
Cfr13I	GGNCC	2 cut(s)	415, 844
ClaI	ATCGAT	1 cut(s)	304
CseI	GACGC	1 cut(s)	150
Csp6I	GTAC	3 cut(s)	615, 651, 943
CviQI	GTAC	3 cut(s)	615, 651, 943
DdeI	CTNAG	5 cut(s)	248, 448, 611, 663, 891
DpnI	GATC	2 cut(s)	44, 787
DpnII	GATC	2 cut(s)	42, 785
EaeI	YGGCCR	1 cut(s)	697
Eam1104I	CTCTTC	1 cut(s)	276
EarI	CTCTTC	1 cut(s)	276
Eco130I	CCWWGG	5 cut(s)	418, 462, 550, 604, 847
Eco147I	AGGCCT	1 cut(s)	981
Eco47I	GGWCC	2 cut(s)	415, 844
Eco47III	AGCGCT	1 cut(s)	176
Eco57I	CTGAAG	1 cut(s)	90
EcoRII	CCWGG	1 cut(s)	840
EcoT14I	CCWWGG	5 cut(s)	418, 462, 550, 604, 847
EcoT22I	ATGCAT	1 cut(s)	100
ErhI	CCWWGG	5 cut(s)	418, 462, 550, 604, 847
FaqI	GGGAC	1 cut(s)	901
Fnu4HI	GCNGC	3 cut(s)	85, 459, 684
FokI	GGATG	2 cut(s)	139, 587
Fsp4HI	GCNGC	3 cut(s)	85, 459, 684
GlaI	GCGC	2 cut(s)	176, 730
GluI	GCNGC	3 cut(s)	85, 459, 684
GsuI	CTGGAG	1 cut(s)	403
HaeII	RGCGCY	2 cut(s)	178, 732
HaeIII	GGCC	6 cut(s)	38, 423, 567, 623, 699, 981
HapII	CCGG	1 cut(s)	974
HgaI	GACGC	1 cut(s)	150
HhaI	GCGC	2 cut(s)	177, 731
Hin6I	GCGC	2 cut(s)	175, 729
HinP1I	GCGC	2 cut(s)	175, 729
HincII	GTYRAC	1 cut(s)	526
HindII	GTYRAC	1 cut(s)	526
HinfI	GANTC	1 cut(s)	212
HpaII	CCGG	1 cut(s)	974
HphI	GGTGA	3 cut(s)	554, 916, 944
Hpy166II	GTNNAC	4 cut(s)	288, 494, 526, 935
Hpy188I	TCNGA	3 cut(s)	70, 511, 790
Hpy188III	TCNNGA	3 cut(s)	181, 297, 317
Hpy8I	GTNNAC	4 cut(s)	288, 494, 526, 935
HpyAV	CCTTC	4 cut(s)	160, 461, 661, 971
HpyCH4III	ACNGT	2 cut(s)	364, 530
HpyCH4V	TGCA	9 cut(s)	91, 98, 266, 657, 683, 716, 955, 971, 1019
HpyF10VI	GCNNNNNNNGC	6 cut(s)	449, 458, 680, 776, 837, 1001
HpyF3I	CTNAG	5 cut(s)	248, 448, 611, 663, 891
HspAI	GCGC	2 cut(s)	175, 729
Kzo9I	GATC	2 cut(s)	42, 785
LmnI	GCTCC	3 cut(s)	329, 395, 920
Lsp1109I	GCAGC	3 cut(s)	96, 470, 695
LweI	GCATC	4 cut(s)	85, 568, 766, 958
MaeIII	GTNAC	4 cut(s)	134, 152, 400, 853
MalI	GATC	2 cut(s)	44, 787
MboI	GATC	2 cut(s)	42, 785
MboII	GAAGA	6 cut(s)	57, 207, 293, 557, 716, 919
MflI	RGATCY	1 cut(s)	785
MlsI	TGGCCA	1 cut(s)	699
MluCI	AATT	3 cut(s)	471, 625, 797
MluI	ACGCGT	1 cut(s)	142
MluNI	TGGCCA	1 cut(s)	699
MnlI	CCTC	9 cut(s)	56, 88, 304, 553, 578, 613, 697, 992, 1015
Mox20I	TGGCCA	1 cut(s)	699
Mph1103I	ATGCAT	1 cut(s)	100
MroXI	GAANNNNTTC	1 cut(s)	176
MscI	TGGCCA	1 cut(s)	699
MseI	TTAA	4 cut(s)	101, 309, 537, 738
MslI	CAYNNNNRTG	2 cut(s)	705, 950
Msp20I	TGGCCA	1 cut(s)	699
MspA1I	CMGCKG	2 cut(s)	783, 860
MspI	CCGG	1 cut(s)	974
MspR9I	CCNGG	1 cut(s)	842
Mva1269I	GAATGC	2 cut(s)	326, 957
MvaI	CCWGG	1 cut(s)	842
MvnI	CGCG	1 cut(s)	144
MwoI	GCNNNNNNNGC	6 cut(s)	449, 458, 680, 776, 837, 1001
NcoI	CCATGG	3 cut(s)	462, 604, 847
NdeII	GATC	2 cut(s)	42, 785
NmuCI	GTSAC	1 cut(s)	152
NsiI	ATGCAT	1 cut(s)	100
NspI	RCATGY	2 cut(s)	657, 831
PagI	TCATGA	1 cut(s)	316
PceI	AGGCCT	1 cut(s)	981
PctI	GAATGC	2 cut(s)	326, 957
PdmI	GAANNNNTTC	1 cut(s)	176
PfeI	GAWTC	1 cut(s)	212
PkrI	GCNGC	3 cut(s)	86, 460, 685
PshBI	ATTAAT	1 cut(s)	101
Psp6I	CCWGG	1 cut(s)	840
PspGI	CCWGG	1 cut(s)	840
PspPI	GGNCC	2 cut(s)	415, 844
PsuI	RGATCY	1 cut(s)	785
RsaI	GTAC	3 cut(s)	616, 652, 944
RsaNI	GTAC	3 cut(s)	615, 651, 943
RseI	CAYNNNNRTG	2 cut(s)	705, 950
SaqAI	TTAA	4 cut(s)	101, 309, 537, 738
SatI	GCNGC	3 cut(s)	85, 459, 684
Sau3AI	GATC	2 cut(s)	42, 785
Sau96I	GGNCC	2 cut(s)	415, 844
ScrFI	CCNGG	1 cut(s)	842
SetI	ASST	7 cut(s)	80, 241, 273, 400, 522, 643, 760
SfaNI	GCATC	4 cut(s)	85, 568, 766, 958
SinI	GGWCC	2 cut(s)	415, 844
SmiMI	CAYNNNNRTG	2 cut(s)	705, 950
SmlI	CTYRAG	1 cut(s)	295
SmoI	CTYRAG	1 cut(s)	295
Sse9I	AATT	3 cut(s)	471, 625, 797
SseBI	AGGCCT	1 cut(s)	981
SsiI	CCGC	3 cut(s)	783, 831, 858
StuI	AGGCCT	1 cut(s)	981
StyD4I	CCNGG	1 cut(s)	840
StyI	CCWWGG	5 cut(s)	418, 462, 550, 604, 847
TaaI	ACNGT	2 cut(s)	364, 530
TaqI	TCGA	2 cut(s)	304, 689
TasI	AATT	3 cut(s)	471, 625, 797
TfiI	GAWTC	1 cut(s)	212
Tru1I	TTAA	4 cut(s)	101, 309, 537, 738
Tru9I	TTAA	4 cut(s)	101, 309, 537, 738
TscAI	CASTG	2 cut(s)	163, 459
TseFI	GTSAC	1 cut(s)	152
TseI	GCWGC	3 cut(s)	84, 458, 683
Tsp45I	GTSAC	1 cut(s)	152
TspDTI	ATGAA	5 cut(s)	294, 333, 366, 580, 808
TspGWI	ACGGA	1 cut(s)	153
TspRI	CASTG	2 cut(s)	163, 459
VpaK11BI	GGWCC	2 cut(s)	415, 844
VspI	ATTAAT	1 cut(s)	101
XceI	RCATGY	2 cut(s)	657, 831
XcmI	CCANNNNNNNNNTGG	1 cut(s)	425
XmnI	GAANNNNTTC	1 cut(s)	176
Zsp2I	ATGCAT	1 cut(s)	100

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.