Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0003116

Physical Location & Seq

Genomic Coordinates Forward (+)

56282384 .. 56285968

Gene Structure 3585 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG366100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 849 bp

ATGCTATTACCATTGGTTTACAGGCCAGTTCTTGACCAGAACTTATACTTTCTGGGAATGAAGTACACCTCAGCAACATTTGCATCTGCAACTGTTAATGTCCTTCCTGCCATAACCTTTATACTGGCACTTTGCTTCAGGTTAGAGACTGTGAACGTCAAGAAGCCACATAGCCTAGCCAAGGTCATCGGAACGTTGGTCACCTTGTCTGGAGCAATGATCATGACTTTGTACAAAGGCCCCATTATCGATGTTTTTCGGGGACACTCAAACAGCACCCAAAGTAGTAGCACCGAGTCAAGCGATCAGCATTGGATCGCTGGCCCCTTGATGCTCATAGCCAGCTGCGGCGGTTGGGCAAGTTTCTTTATCCTACAATCGTTCACATTGAAGAAGTACCCAGCACAGTTGTCTCTCACAGCCTGGATATGTGTAATGGGTGTGCTGGAAGGTGGAGTAGTGACACTTGTGATGGAACGCAAAATGAGTGTGTGGGTTATAGGTTGGGACTCAAGGCTTCTTGCTTCTGTTTACTCTGGAGTGATTTGTTCTGGACTTGCATATTATGTGCAAGGTGTTGTGAATAGAGAACGAGGCCCCGTTTTCGTGACATCTTTCAGCCCTCTTTGCATGATCATCACCGCCGTTCTAGGTGCCATCGTTTTAGCTGAGCAAGTCCACCTCGGAAGTATACTTGGAGCTATTCTCATTGTGTTCGGACTCTACACCGTGGTTTGGGGCAAAAGCAAAGACCCTGTGGCCTTGGACGAGCCATTGAAAGATGAGAAAGGTGTTAACCACGAACTGCCAGTCACTGCTGCAAATAATAGCATCAAGGGAAGTACCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003333 GO:0003674 GO:0005215 GO:0005342 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0005887 GO:0005938 GO:0006810 GO:0006811 GO:0006820 GO:0006865 GO:0007154 GO:0007165 GO:0008150 GO:0008509 GO:0008514 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009755 GO:0009987 GO:0010033 GO:0015075 GO:0015171 GO:0015179 GO:0015318 GO:0015562 GO:0015711 GO:0015807 GO:0015849 GO:0016020 GO:0016021 GO:0022857 GO:0023052 GO:0031224 GO:0031226 GO:0032870 GO:0032973 GO:0034220 GO:0034639 GO:0042221 GO:0042592 GO:0043090 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0046942 GO:0046943 GO:0048878 GO:0050789 GO:0050794 GO:0050801 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0055081 GO:0055085 GO:0065007 GO:0065008 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0071702 GO:0071705 GO:0071944 GO:0080144 GO:0098656 GO:0099568 GO:0140115 GO:1902475 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EamA

Protein Analysis

282

Amino Acids

30.48

Weight (kDa)

8.76

Isoelectric Point (pI)

29.7

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EamA	PF00892	108 - 245	4.2e-09	EamA-like transporter family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003116)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G21890 AT1G21890 AT1G44800 AT4G08300
fragaria_vesca	FvH4_2g26691 FvH4_2g26691 FvH4_2g26691 FvH4_2g26700
malus_domestica	MD00G1157200.v1.1 MD15G1351700.v1.1 MD15G1351800.v1.1
prunus_persica	Prupe.1G500400_v2.0.a1 Prupe.1G500400_v2.0.a1 Prupe.1G500500_v2.0.a1
pyrus_communis	pycom08g14190 pycom15g31510
rosa_chinensis	RchiOBHm_Chr6g0295541 RchiOBHm_Chr6g0295571
rosa_laevigata	RLG00000011789 RLG00000011792
rosa_multiflora	Rmu_sc0005000.1_g000009 Rmu_sc0005000.1_g000012
rosa_roxburghii	Rroxscaffold_7G00172360 Rroxscaffold_7G00172380
rosa_rugosa	Rorug06G0251800 Rorug06G0251900 Rorug06G0252000 Rorug06G0252100
rosa_samantha	Rh6AG365000 Rh6AG365200 Rh6BG373400 Rh6CG379600 Rh6CG379800 Rh6DG366100 Rh6DG366400
rosa_wichuraiana	Rw6G031880 Rw6G031890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	653
AccI	GTMKAC	1 cut(s)	691
AciI	CCGC	3 cut(s)	348, 351, 642
AclI	AACGTT	1 cut(s)	194
AclWI	GGATC	1 cut(s)	323
AcuI	CTGAAG	1 cut(s)	121
AfaI	GTAC	4 cut(s)	65, 233, 398, 844
AfiI	CCNNNNNNNGG	2 cut(s)	181, 735
AgsI	TTSAA	2 cut(s)	391, 778
AjnI	CCWGG	1 cut(s)	422
AluBI	AGCT	3 cut(s)	345, 668, 701
AluI	AGCT	3 cut(s)	345, 668, 701
Alw26I	GTCTC	2 cut(s)	140, 417
AlwI	GGATC	1 cut(s)	323
AlwNI	CAGNNNCTG	1 cut(s)	815
AoxI	GGCC	5 cut(s)	23, 238, 322, 595, 759
ApeKI	GCWGC	2 cut(s)	345, 818
ArsI	GACNNNNNNTTYG	2 cut(s)	795, 827
AspS9I	GGNCC	3 cut(s)	239, 323, 596
AsuHPI	GGTGA	2 cut(s)	193, 631
BanI	GGYRCC	1 cut(s)	653
BbvCI	CCTCAGC	1 cut(s)	70
BbvI	GCAGC	2 cut(s)	332, 805
BccI	CCATC	2 cut(s)	466, 665
BceAI	ACGGC	1 cut(s)	629
BciT130I	CCWGG	1 cut(s)	424
BclI	TGATCA	2 cut(s)	219, 633
BcoDI	GTCTC	2 cut(s)	140, 417
BfaI	CTAG	2 cut(s)	176, 650
BisI	GCNGC	3 cut(s)	346, 349, 819
BlpI	GCTNAGC	1 cut(s)	669
BlsI	GCNGC	3 cut(s)	347, 350, 820
Bme1390I	CCNGG	1 cut(s)	424
BmgT120I	GGNCC	3 cut(s)	239, 323, 596
BmiI	GGNNCC	4 cut(s)	241, 325, 598, 655
BmrFI	CCNGG	1 cut(s)	424
BmsI	GCATC	3 cut(s)	92, 321, 840
BplI	GAGNNNNNCTC	2 cut(s)	690, 722
BpmI	CTGGAG	2 cut(s)	231, 558
Bpu10I	CCTNAGC	1 cut(s)	70
Bpu1102I	GCTNAGC	1 cut(s)	669
BpuEI	CTTGAG	1 cut(s)	496
Bsa29I	ATCGAT	1 cut(s)	249
BsaJI	CCNNGG	4 cut(s)	180, 682, 729, 762
Bsc4I	CCNNNNNNNGG	2 cut(s)	181, 735
Bse1I	ACTGG	3 cut(s)	26, 129, 809
Bse3DI	GCAATG	1 cut(s)	222
BseBI	CCWGG	1 cut(s)	424
BseCI	ATCGAT	1 cut(s)	249
BseDI	CCNNGG	4 cut(s)	180, 682, 729, 762
BseLI	CCNNNNNNNGG	2 cut(s)	181, 735
BseMI	GCAATG	1 cut(s)	222
BseMII	CTCAG	2 cut(s)	84, 660
BseNI	ACTGG	3 cut(s)	26, 129, 809
BseXI	GCAGC	2 cut(s)	332, 805
BseYI	CCCAGC	1 cut(s)	400
BshFI	GGCC	5 cut(s)	25, 240, 324, 597, 761
BshNI	GGYRCC	1 cut(s)	653
BshVI	ATCGAT	1 cut(s)	249
BslFI	GGGAC	2 cut(s)	276, 521
BslI	CCNNNNNNNGG	2 cut(s)	181, 735
BsmAI	GTCTC	2 cut(s)	140, 417
BsmFI	GGGAC	2 cut(s)	276, 521
BsnI	GGCC	5 cut(s)	25, 240, 324, 597, 761
Bsp1407I	TGTACA	1 cut(s)	231
Bsp143I	GATC	4 cut(s)	219, 304, 315, 633
Bsp1720I	GCTNAGC	1 cut(s)	669
BspACI	CCGC	3 cut(s)	348, 351, 642
BspANI	GGCC	5 cut(s)	25, 240, 324, 597, 761
BspCNI	CTCAG	2 cut(s)	83, 661
BspDI	ATCGAT	1 cut(s)	249
BspHI	TCATGA	1 cut(s)	222
BspLI	GGNNCC	4 cut(s)	241, 325, 598, 655
BspPI	GGATC	1 cut(s)	323
BspT107I	GGYRCC	1 cut(s)	653
BsrDI	GCAATG	1 cut(s)	222
BsrGI	TGTACA	1 cut(s)	231
BsrI	ACTGG	3 cut(s)	26, 129, 809
BssECI	CCNNGG	4 cut(s)	180, 682, 729, 762
BssMI	GATC	4 cut(s)	219, 304, 315, 633
BssNAI	GTATAC	1 cut(s)	692
BssT1I	CCWWGG	2 cut(s)	180, 762
Bst1107I	GTATAC	1 cut(s)	692
Bst2UI	CCWGG	1 cut(s)	424
Bst4CI	ACNGT	4 cut(s)	94, 151, 408, 730
BstAPI	GCANNNNNTGC	1 cut(s)	80
BstAUI	TGTACA	1 cut(s)	231
BstC8I	GCNNGC	2 cut(s)	322, 343
BstDEI	CTNAG	2 cut(s)	70, 669
BstDSI	CCRYGG	1 cut(s)	729
BstEII	GGTNACC	1 cut(s)	199
BstENI	CCTNNNNNAGG	1 cut(s)	179
BstKTI	GATC	4 cut(s)	222, 307, 318, 636
BstMAI	GTCTC	2 cut(s)	140, 417
BstMBI	GATC	4 cut(s)	219, 304, 315, 633
BstMWI	GCNNNNNNNGC	2 cut(s)	80, 627
BstNI	CCWGG	1 cut(s)	424
BstPI	GGTNACC	1 cut(s)	199
BstSCI	CCNGG	1 cut(s)	422
BstV1I	GCAGC	2 cut(s)	332, 805
BstZ17I	GTATAC	1 cut(s)	692
Bsu15I	ATCGAT	1 cut(s)	249
BsuRI	GGCC	5 cut(s)	25, 240, 324, 597, 761
BsuTUI	ATCGAT	1 cut(s)	249
BtgI	CCRYGG	1 cut(s)	729
BtsI	GCAGTG	1 cut(s)	813
BtsIMutI	CAGTG	1 cut(s)	813
Cac8I	GCNNGC	2 cut(s)	322, 343
CaiI	CAGNNNCTG	1 cut(s)	815
CciI	TCATGA	1 cut(s)	222
Cfr13I	GGNCC	3 cut(s)	239, 323, 596
ClaI	ATCGAT	1 cut(s)	249
Csp6I	GTAC	4 cut(s)	64, 232, 397, 843
CviAII	CATG	2 cut(s)	223, 631
CviQI	GTAC	4 cut(s)	64, 232, 397, 843
DdeI	CTNAG	2 cut(s)	70, 669
DpnI	GATC	4 cut(s)	221, 306, 317, 635
DpnII	GATC	4 cut(s)	219, 304, 315, 633
Eco130I	CCWWGG	2 cut(s)	180, 762
Eco57I	CTGAAG	1 cut(s)	121
Eco91I	GGTNACC	1 cut(s)	199
EcoNI	CCTNNNNNAGG	1 cut(s)	179
EcoO109I	RGGNCCY	2 cut(s)	239, 596
EcoO65I	GGTNACC	1 cut(s)	199
EcoRII	CCWGG	1 cut(s)	422
EcoT14I	CCWWGG	2 cut(s)	180, 762
ErhI	CCWWGG	2 cut(s)	180, 762
FaeI	CATG	2 cut(s)	226, 634
FaqI	GGGAC	2 cut(s)	276, 521
FatI	CATG	2 cut(s)	222, 630
FbaI	TGATCA	2 cut(s)	219, 633
FblI	GTMKAC	1 cut(s)	691
Fnu4HI	GCNGC	3 cut(s)	346, 349, 819
Fsp4HI	GCNGC	3 cut(s)	346, 349, 819
FspBI	CTAG	2 cut(s)	176, 650
GluI	GCNGC	3 cut(s)	346, 349, 819
GsaI	CCCAGC	1 cut(s)	404
GsuI	CTGGAG	2 cut(s)	231, 558
HaeIII	GGCC	5 cut(s)	25, 240, 324, 597, 761
Hin1II	CATG	2 cut(s)	226, 634
HincII	GTYRAC	1 cut(s)	796
HindII	GTYRAC	1 cut(s)	796
HinfI	GANTC	3 cut(s)	296, 509, 720
HpaI	GTTAAC	1 cut(s)	796
HphI	GGTGA	2 cut(s)	193, 631
Hpy166II	GTNNAC	8 cut(s)	19, 66, 154, 384, 532, 679, 692, 796
Hpy188I	TCNGA	3 cut(s)	191, 686, 719
Hpy188III	TCNNGA	7 cut(s)	32, 160, 210, 223, 537, 552, 607
Hpy8I	GTNNAC	8 cut(s)	19, 66, 154, 384, 532, 679, 692, 796
HpyAV	CCTTC	2 cut(s)	113, 443
HpyCH4III	ACNGT	4 cut(s)	94, 151, 408, 730
HpyCH4IV	ACGT	2 cut(s)	156, 194
HpyCH4V	TGCA	6 cut(s)	83, 89, 560, 571, 630, 821
HpyF10VI	GCNNNNNNNGC	2 cut(s)	80, 627
HpyF3I	CTNAG	2 cut(s)	70, 669
HpySE526I	ACGT	2 cut(s)	156, 194
Hsp92II	CATG	2 cut(s)	226, 634
Ksp22I	TGATCA	2 cut(s)	219, 633
KspAI	GTTAAC	1 cut(s)	796
Kzo9I	GATC	4 cut(s)	219, 304, 315, 633
LmnI	GCTCC	2 cut(s)	212, 698
Lsp1109I	GCAGC	2 cut(s)	332, 805
LweI	GCATC	3 cut(s)	92, 321, 840
MaeI	CTAG	2 cut(s)	176, 650
MaeII	ACGT	2 cut(s)	156, 194
MaeIII	GTNAC	4 cut(s)	199, 460, 607, 811
MalI	GATC	4 cut(s)	221, 306, 317, 635
MboI	GATC	4 cut(s)	219, 304, 315, 633
MboII	GAAGA	1 cut(s)	403
MlyI	GAGTC	3 cut(s)	305, 503, 714
MnlI	CCTC	4 cut(s)	79, 587, 633, 692
MseI	TTAA	2 cut(s)	96, 795
MspA1I	CMGCKG	1 cut(s)	345
MspR9I	CCNGG	1 cut(s)	424
MvaI	CCWGG	1 cut(s)	424
MwoI	GCNNNNNNNGC	2 cut(s)	80, 627
NdeII	GATC	4 cut(s)	219, 304, 315, 633
NlaIII	CATG	2 cut(s)	226, 634
NlaIV	GGNNCC	4 cut(s)	241, 325, 598, 655
NmuCI	GTSAC	4 cut(s)	199, 460, 607, 811
PagI	TCATGA	1 cut(s)	222
PkrI	GCNGC	3 cut(s)	347, 350, 820
PleI	GAGTC	3 cut(s)	304, 503, 714
PpsI	GAGTC	3 cut(s)	304, 503, 714
Psp1406I	AACGTT	1 cut(s)	194
Psp6I	CCWGG	1 cut(s)	422
PspEI	GGTNACC	1 cut(s)	199
PspFI	CCCAGC	1 cut(s)	400
PspGI	CCWGG	1 cut(s)	422
PspN4I	GGNNCC	4 cut(s)	241, 325, 598, 655
PspPI	GGNCC	3 cut(s)	239, 323, 596
PstNI	CAGNNNCTG	1 cut(s)	815
PvuII	CAGCTG	1 cut(s)	345
RsaI	GTAC	4 cut(s)	65, 233, 398, 844
RsaNI	GTAC	4 cut(s)	64, 232, 397, 843
SaqAI	TTAA	2 cut(s)	96, 795
SatI	GCNGC	3 cut(s)	346, 349, 819
Sau3AI	GATC	4 cut(s)	219, 304, 315, 633
Sau96I	GGNCC	3 cut(s)	239, 323, 596
SchI	GAGTC	3 cut(s)	305, 503, 714
ScrFI	CCNGG	1 cut(s)	424
SfaNI	GCATC	3 cut(s)	92, 321, 840
SmlI	CTYRAG	1 cut(s)	511
SmoI	CTYRAG	1 cut(s)	511
SsiI	CCGC	3 cut(s)	348, 351, 642
SspMI	CTAG	2 cut(s)	176, 650
StyD4I	CCNGG	1 cut(s)	422
StyI	CCWWGG	2 cut(s)	180, 762
TaaI	ACNGT	4 cut(s)	94, 151, 408, 730
TaiI	ACGT	2 cut(s)	159, 197
TaqI	TCGA	1 cut(s)	249
TatI	WGTACW	2 cut(s)	63, 231
TauI	GCSGC	1 cut(s)	351
Tru1I	TTAA	2 cut(s)	96, 795
Tru9I	TTAA	2 cut(s)	96, 795
TscAI	CASTG	1 cut(s)	820
TseFI	GTSAC	4 cut(s)	199, 460, 607, 811
TseI	GCWGC	2 cut(s)	345, 818
Tsp45I	GTSAC	4 cut(s)	199, 460, 607, 811
TspDTI	ATGAA	1 cut(s)	74
TspRI	CASTG	1 cut(s)	820
XagI	CCTNNNNNAGG	1 cut(s)	179
XmiI	GTMKAC	1 cut(s)	691
XspI	CTAG	2 cut(s)	176, 650

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.