Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0003116

Physical Location & Seq

Genomic Coordinates Forward (+)

56302867 .. 56305481

Gene Structure 2615 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG366400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 849 bp

ATGACCTACACTTCAGCAACATTTGCTTCTGCCACTGCTAATATCCTCCCTGCCATTACCTTCATTTTCGCACTTATTTTCAGGTTGGAGAAAATCAATTTGAAGAAGATCCCTAGCGTAGCAAAGGTGATCGGAACTGTAATCACCGTCAGTGGAGCAATGCTCATGACGTTTTACAAAGGCCCGATCGTTGAATTTATAAGTGCACAAGCTAGCCACCATGCAACCACTGCTGCCGCCACCGACAAGCATTGGGTTCTCGGCACTGTCATGCTCCTAGCTCGTTGCTGTGGTTGGTCCGGTTTCTTCATTCTCCAATCGTTTACTTTGAAGGTGTACCCAGCAGAGCTCTCTCTCACTGCTTTGATCTGCTTCATGGGTGCTTTGGAAGGTGCCGTAGCTACACTAGTTATCGAACACAACATGAGTGTTTGGGTTATAGGCTGGGACTCTAGGCTCCTTGCTGCAGCTTACTCTGGGATAGTTTGCTCTGGAATTGCATTTTATGTCCAAGGGATTGTGATGAAGGAACAAGGCCCTGTGTTCGTCACAGCTTTCAGCCCACTGGCCATGATCATCACCGCCGCTCTAGCCGCCATTATTTTAGCTGAGCAGGTCCGCCTTGGAAGTGTAATTGGGACCATTCTCATAGTCATTGGCCTCTATGCTGTTGTGTGGGGTAAAAGTAAAGAACGTTCAGCCTCAATGAAAGATGTGAAAACTATTGGTCATGAATTGCCAATCACTCATGATACTGCAAGATCATCAACAACTGTTCATAGCAAGAATGATACTACTGGACTCGAGGAGAATGTTGTCAAAGTTCCAATTAACCCACAAGAATCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003333 GO:0003674 GO:0005215 GO:0005342 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006820 GO:0006865 GO:0008150 GO:0008509 GO:0008514 GO:0015075 GO:0015171 GO:0015318 GO:0015711 GO:0015849 GO:0016020 GO:0022857 GO:0032973 GO:0034220 GO:0042592 GO:0043090 GO:0044464 GO:0046942 GO:0046943 GO:0048878 GO:0050801 GO:0051179 GO:0051234 GO:0055081 GO:0055085 GO:0065007 GO:0065008 GO:0071702 GO:0071705 GO:0071944 GO:0080144 GO:0098656 GO:0140115 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EamA

Protein Analysis

282

Amino Acids

30.2

Weight (kDa)

8.64

Isoelectric Point (pI)

31.4

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EamA	PF00892	88 - 225	6.1e-09	EamA-like transporter family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003116)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G21890 AT1G21890 AT1G44800 AT4G08300
fragaria_vesca	FvH4_2g26691 FvH4_2g26691 FvH4_2g26691 FvH4_2g26700
malus_domestica	MD00G1157200.v1.1 MD15G1351700.v1.1 MD15G1351800.v1.1
prunus_persica	Prupe.1G500400_v2.0.a1 Prupe.1G500400_v2.0.a1 Prupe.1G500500_v2.0.a1
pyrus_communis	pycom08g14190 pycom15g31510
rosa_chinensis	RchiOBHm_Chr6g0295541 RchiOBHm_Chr6g0295571
rosa_laevigata	RLG00000011789 RLG00000011792
rosa_multiflora	Rmu_sc0005000.1_g000009 Rmu_sc0005000.1_g000012
rosa_roxburghii	Rroxscaffold_7G00172360 Rroxscaffold_7G00172380
rosa_rugosa	Rorug06G0251800 Rorug06G0251900 Rorug06G0252000 Rorug06G0252100
rosa_samantha	Rh6AG365000 Rh6AG365200 Rh6BG373400 Rh6CG379600 Rh6CG379800 Rh6DG366100 Rh6DG366400
rosa_wichuraiana	Rw6G031880 Rw6G031890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	200
Acc36I	ACCTGC	1 cut(s)	604
AccB1I	GGYRCC	1 cut(s)	392
AccBSI	CCGCTC	1 cut(s)	587
AciI	CCGC	5 cut(s)	237, 582, 585, 594, 619
AclI	AACGTT	1 cut(s)	694
AclWI	GGATC	1 cut(s)	103
AcoI	YGGCCR	1 cut(s)	567
AcsI	RAATTY	1 cut(s)	194
AfaI	GTAC	1 cut(s)	338
AgsI	TTSAA	3 cut(s)	103, 194, 331
AhlI	ACTAGT	1 cut(s)	406
AluBI	AGCT	7 cut(s)	212, 281, 349, 401, 470, 554, 608
AluI	AGCT	7 cut(s)	212, 281, 349, 401, 470, 554, 608
Alw21I	GWGCWC	2 cut(s)	208, 351
Alw44I	GTGCAC	1 cut(s)	204
AlwI	GGATC	1 cut(s)	103
Ama87I	CYCGRG	1 cut(s)	803
AoxI	GGCC	4 cut(s)	181, 535, 567, 658
ApaLI	GTGCAC	1 cut(s)	204
ApeKI	GCWGC	3 cut(s)	233, 464, 467
ApoI	RAATTY	1 cut(s)	194
AspS9I	GGNCC	5 cut(s)	182, 297, 536, 616, 639
AsuHPI	GGTGA	3 cut(s)	136, 139, 571
AsuNHI	GCTAGC	1 cut(s)	212
AvaI	CYCGRG	1 cut(s)	803
AvaII	GGWCC	3 cut(s)	297, 616, 639
BaeGI	GKGCMC	1 cut(s)	208
BalI	TGGCCA	1 cut(s)	569
BanI	GGYRCC	1 cut(s)	392
BanII	GRGCYC	1 cut(s)	351
Bbv12I	GWGCWC	2 cut(s)	208, 351
BbvI	GCAGC	3 cut(s)	220, 451, 479
BceAI	ACGGC	1 cut(s)	380
BclI	TGATCA	1 cut(s)	573
BcuI	ACTAGT	1 cut(s)	406
BfaI	CTAG	6 cut(s)	114, 213, 278, 407, 453, 590
BfmI	CTRYAG	1 cut(s)	465
BfuAI	ACCTGC	1 cut(s)	604
BisI	GCNGC	6 cut(s)	234, 237, 465, 468, 585, 594
BlpI	GCTNAGC	1 cut(s)	609
BlsI	GCNGC	6 cut(s)	235, 238, 466, 469, 586, 595
Bme18I	GGWCC	3 cut(s)	297, 616, 639
BmeT110I	CYCGRG	1 cut(s)	803
BmgT120I	GGNCC	5 cut(s)	182, 297, 536, 616, 639
BmiI	GGNNCC	3 cut(s)	394, 458, 640
BmtI	GCTAGC	1 cut(s)	216
BplI	GAGNNNNNCTC	2 cut(s)	147, 179
Bpu1102I	GCTNAGC	1 cut(s)	609
BsaJI	CCNNGG	2 cut(s)	511, 622
BsaWI	WCCGGW	1 cut(s)	299
Bse1I	ACTGG	2 cut(s)	570, 802
Bse3DI	GCAATG	1 cut(s)	165
BseDI	CCNNGG	2 cut(s)	511, 622
BseMI	GCAATG	1 cut(s)	165
BseMII	CTCAG	1 cut(s)	600
BseNI	ACTGG	2 cut(s)	570, 802
BseRI	GAGGAG	1 cut(s)	821
BseSI	GKGCMC	1 cut(s)	208
BseXI	GCAGC	3 cut(s)	220, 451, 479
BseYI	CCCAGC	2 cut(s)	340, 444
Bsh1285I	CGRYCG	1 cut(s)	189
BshFI	GGCC	4 cut(s)	183, 537, 569, 660
BshNI	GGYRCC	1 cut(s)	392
BsiEI	CGRYCG	1 cut(s)	189
BsiHKAI	GWGCWC	2 cut(s)	208, 351
BsiHKCI	CYCGRG	1 cut(s)	803
BsiSI	CCGG	1 cut(s)	300
BslFI	GGGAC	2 cut(s)	461, 652
BsmFI	GGGAC	2 cut(s)	461, 652
BsnI	GGCC	4 cut(s)	183, 537, 569, 660
BsoBI	CYCGRG	1 cut(s)	803
Bsp1286I	GDGCHC	2 cut(s)	208, 351
Bsp143I	GATC	6 cut(s)	108, 129, 186, 366, 573, 761
Bsp1720I	GCTNAGC	1 cut(s)	609
BspACI	CCGC	5 cut(s)	237, 582, 585, 594, 619
BspANI	GGCC	4 cut(s)	183, 537, 569, 660
BspCNI	CTCAG	1 cut(s)	601
BspHI	TCATGA	4 cut(s)	165, 730, 748, 845
BspLI	GGNNCC	3 cut(s)	394, 458, 640
BspMAI	CTGCAG	1 cut(s)	469
BspMI	ACCTGC	1 cut(s)	604
BspOI	GCTAGC	1 cut(s)	216
BspPI	GGATC	1 cut(s)	103
BspT107I	GGYRCC	1 cut(s)	392
BsrBI	CCGCTC	1 cut(s)	587
BsrDI	GCAATG	1 cut(s)	165
BsrI	ACTGG	2 cut(s)	570, 802
BssECI	CCNNGG	2 cut(s)	511, 622
BssMI	GATC	6 cut(s)	108, 129, 186, 366, 573, 761
BssT1I	CCWWGG	2 cut(s)	511, 622
Bst4CI	ACNGT	4 cut(s)	139, 148, 268, 775
BstAPI	GCANNNNNTGC	2 cut(s)	23, 230
BstC8I	GCNNGC	1 cut(s)	214
BstDEI	CTNAG	1 cut(s)	609
BstKTI	GATC	6 cut(s)	111, 132, 189, 369, 576, 764
BstMBI	GATC	6 cut(s)	108, 129, 186, 366, 573, 761
BstMCI	CGRYCG	1 cut(s)	189
BstMWI	GCNNNNNNNGC	4 cut(s)	23, 230, 590, 593
BstSFI	CTRYAG	1 cut(s)	465
BstSLI	GKGCMC	1 cut(s)	208
BstV1I	GCAGC	3 cut(s)	220, 451, 479
BstX2I	RGATCY	1 cut(s)	108
BstYI	RGATCY	1 cut(s)	108
BsuRI	GGCC	4 cut(s)	183, 537, 569, 660
BtsI	GCAGTG	3 cut(s)	33, 228, 357
BtsIMutI	CAGTG	6 cut(s)	33, 157, 228, 264, 357, 563
BveI	ACCTGC	1 cut(s)	604
Cac8I	GCNNGC	1 cut(s)	214
CciI	TCATGA	4 cut(s)	165, 730, 748, 845
Cfr13I	GGNCC	5 cut(s)	182, 297, 536, 616, 639
Csp6I	GTAC	1 cut(s)	337
CviAII	CATG	9 cut(s)	166, 221, 271, 376, 424, 571, 731, 749, 846
CviQI	GTAC	1 cut(s)	337
DdeI	CTNAG	1 cut(s)	609
DpnI	GATC	6 cut(s)	110, 131, 188, 368, 575, 763
DpnII	GATC	6 cut(s)	108, 129, 186, 366, 573, 761
EaeI	YGGCCR	1 cut(s)	567
EciI	GGCGGA	1 cut(s)	608
Ecl136II	GAGCTC	1 cut(s)	349
Eco130I	CCWWGG	2 cut(s)	511, 622
Eco24I	GRGCYC	1 cut(s)	351
Eco47I	GGWCC	3 cut(s)	297, 616, 639
Eco53kI	GAGCTC	1 cut(s)	349
Eco88I	CYCGRG	1 cut(s)	803
EcoICRI	GAGCTC	1 cut(s)	349
EcoO109I	RGGNCCY	1 cut(s)	536
EcoT14I	CCWWGG	2 cut(s)	511, 622
EcoT38I	GRGCYC	1 cut(s)	351
ErhI	CCWWGG	2 cut(s)	511, 622
FaeI	CATG	9 cut(s)	169, 224, 274, 379, 427, 574, 734, 752, 849
FaqI	GGGAC	2 cut(s)	461, 652
FatI	CATG	9 cut(s)	165, 220, 270, 375, 423, 570, 730, 748, 845
FbaI	TGATCA	1 cut(s)	573
Fnu4HI	GCNGC	6 cut(s)	234, 237, 465, 468, 585, 594
FriOI	GRGCYC	1 cut(s)	351
Fsp4HI	GCNGC	6 cut(s)	234, 237, 465, 468, 585, 594
FspBI	CTAG	6 cut(s)	114, 213, 278, 407, 453, 590
GluI	GCNGC	6 cut(s)	234, 237, 465, 468, 585, 594
GsaI	CCCAGC	2 cut(s)	344, 448
HaeIII	GGCC	4 cut(s)	183, 537, 569, 660
HapII	CCGG	1 cut(s)	300
Hin1II	CATG	9 cut(s)	169, 224, 274, 379, 427, 574, 734, 752, 849
HinfI	GANTC	3 cut(s)	449, 801, 842
HpaII	CCGG	1 cut(s)	300
HphI	GGTGA	3 cut(s)	136, 139, 571
Hpy166II	GTNNAC	3 cut(s)	206, 324, 337
Hpy188I	TCNGA	1 cut(s)	134
Hpy188III	TCNNGA	5 cut(s)	166, 492, 731, 749, 846
Hpy8I	GTNNAC	3 cut(s)	206, 324, 337
HpyAV	CCTTC	4 cut(s)	70, 325, 383, 520
HpyCH4III	ACNGT	4 cut(s)	139, 148, 268, 775
HpyCH4IV	ACGT	2 cut(s)	170, 694
HpyCH4V	TGCA	5 cut(s)	206, 224, 467, 500, 758
HpyF10VI	GCNNNNNNNGC	4 cut(s)	23, 230, 590, 593
HpyF3I	CTNAG	1 cut(s)	609
HpySE526I	ACGT	2 cut(s)	170, 694
Hsp92II	CATG	9 cut(s)	169, 224, 274, 379, 427, 574, 734, 752, 849
Ksp22I	TGATCA	1 cut(s)	573
Kzo9I	GATC	6 cut(s)	108, 129, 186, 366, 573, 761
LmnI	GCTCC	3 cut(s)	155, 279, 462
Lsp1109I	GCAGC	3 cut(s)	220, 451, 479
MaeI	CTAG	6 cut(s)	114, 213, 278, 407, 453, 590
MaeII	ACGT	2 cut(s)	170, 694
MaeIII	GTNAC	1 cut(s)	547
MalI	GATC	6 cut(s)	110, 131, 188, 368, 575, 763
MbiI	CCGCTC	1 cut(s)	587
MboI	GATC	6 cut(s)	108, 129, 186, 366, 573, 761
MboII	GAAGA	3 cut(s)	115, 118, 298
MflI	RGATCY	1 cut(s)	108
MhlI	GDGCHC	2 cut(s)	208, 351
MlsI	TGGCCA	1 cut(s)	569
MluCI	AATT	6 cut(s)	97, 194, 495, 633, 734, 828
MluNI	TGGCCA	1 cut(s)	569
MlyI	GAGTC	2 cut(s)	443, 795
MmeI	TCCRAC	1 cut(s)	66
MnlI	CCTC	4 cut(s)	56, 671, 712, 799
Mox20I	TGGCCA	1 cut(s)	569
MscI	TGGCCA	1 cut(s)	569
MseI	TTAA	1 cut(s)	831
MslI	CAYNNNNRTG	1 cut(s)	269
Msp20I	TGGCCA	1 cut(s)	569
MspI	CCGG	1 cut(s)	300
MwoI	GCNNNNNNNGC	4 cut(s)	23, 230, 590, 593
NdeII	GATC	6 cut(s)	108, 129, 186, 366, 573, 761
NheI	GCTAGC	1 cut(s)	212
NlaIII	CATG	9 cut(s)	169, 224, 274, 379, 427, 574, 734, 752, 849
NlaIV	GGNNCC	3 cut(s)	394, 458, 640
NmeAIII	GCCGAG	1 cut(s)	240
NmuCI	GTSAC	1 cut(s)	547
PaeR7I	CTCGAG	1 cut(s)	803
PagI	TCATGA	4 cut(s)	165, 730, 748, 845
PfeI	GAWTC	1 cut(s)	842
PkrI	GCNGC	6 cut(s)	235, 238, 466, 469, 586, 595
Ple19I	CGATCG	1 cut(s)	189
PleI	GAGTC	2 cut(s)	443, 795
PpsI	GAGTC	2 cut(s)	443, 795
PsiI	TTATAA	1 cut(s)	200
Psp124BI	GAGCTC	1 cut(s)	351
Psp1406I	AACGTT	1 cut(s)	694
PspFI	CCCAGC	2 cut(s)	340, 444
PspN4I	GGNNCC	3 cut(s)	394, 458, 640
PspPI	GGNCC	5 cut(s)	182, 297, 536, 616, 639
PspXI	VCTCGAGB	1 cut(s)	803
PsrI	GAACNNNNNNTAC	2 cut(s)	679, 711
PstI	CTGCAG	1 cut(s)	469
PsuI	RGATCY	1 cut(s)	108
PvuI	CGATCG	1 cut(s)	189
RsaI	GTAC	1 cut(s)	338
RsaNI	GTAC	1 cut(s)	337
RseI	CAYNNNNRTG	1 cut(s)	269
SacI	GAGCTC	1 cut(s)	351
SaqAI	TTAA	1 cut(s)	831
SatI	GCNGC	6 cut(s)	234, 237, 465, 468, 585, 594
Sau3AI	GATC	6 cut(s)	108, 129, 186, 366, 573, 761
Sau96I	GGNCC	5 cut(s)	182, 297, 536, 616, 639
SchI	GAGTC	2 cut(s)	443, 795
SduI	GDGCHC	2 cut(s)	208, 351
SfcI	CTRYAG	1 cut(s)	465
Sfr274I	CTCGAG	1 cut(s)	803
SinI	GGWCC	3 cut(s)	297, 616, 639
SlaI	CTCGAG	1 cut(s)	803
SmiMI	CAYNNNNRTG	1 cut(s)	269
SmlI	CTYRAG	1 cut(s)	803
SmoI	CTYRAG	1 cut(s)	803
SpeI	ACTAGT	1 cut(s)	406
Sse9I	AATT	6 cut(s)	97, 194, 495, 633, 734, 828
SsiI	CCGC	5 cut(s)	237, 582, 585, 594, 619
SspMI	CTAG	6 cut(s)	114, 213, 278, 407, 453, 590
SstI	GAGCTC	1 cut(s)	351
StyI	CCWWGG	2 cut(s)	511, 622
TaaI	ACNGT	4 cut(s)	139, 148, 268, 775
TaiI	ACGT	2 cut(s)	173, 697
TaqI	TCGA	2 cut(s)	414, 804
TasI	AATT	6 cut(s)	97, 194, 495, 633, 734, 828
TauI	GCSGC	3 cut(s)	239, 587, 596
TfiI	GAWTC	1 cut(s)	842
Tru1I	TTAA	1 cut(s)	831
Tru9I	TTAA	1 cut(s)	831
TscAI	CASTG	6 cut(s)	40, 157, 235, 271, 364, 570
TseFI	GTSAC	1 cut(s)	547
TseI	GCWGC	3 cut(s)	233, 464, 467
Tsp45I	GTSAC	1 cut(s)	547
TspDTI	ATGAA	7 cut(s)	52, 298, 364, 539, 722, 747, 767
TspRI	CASTG	6 cut(s)	40, 157, 235, 271, 364, 570
VneI	GTGCAC	1 cut(s)	204
VpaK11BI	GGWCC	3 cut(s)	297, 616, 639
XapI	RAATTY	1 cut(s)	194
XhoI	CTCGAG	1 cut(s)	803
XspI	CTAG	6 cut(s)	114, 213, 278, 407, 453, 590

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.