Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0003116

Physical Location & Seq

Genomic Coordinates Forward (+)

60266650 .. 60270287

Gene Structure 3638 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG373400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1104 bp

ATGGGAGACCAAAGTCCATCTGGGTCTAAGTTGAGTGTGTTTCTCAAGAAGATCAAACCTTATTTGGCTATGGTCTCCCTGCAGTTTGGGTATGCAGGCATGTACATCATAAGCATGGTCTCGTTTAAGCATGGCATGAGTCACTTTGTCTTGTCGGTGTACCGTCACGTTGTTGCCTTCTGTGTCATTGCACCCTTCGCGTTGGTTCTTGAAAGGAAAATAAGGCCAAGAATGACTCTCCCCATATTCCTCAGAATAGTGTTGCTTGGATTTCTTGAGCCAGTTCTTGACCAGAACTTATACTTTCTGGGAATGAAGTACACCTCAGCAACATTTGCATCTGCAACTGTTAATGTCCTTCCTGCCATAACCTTTATACTGGCACTTTGCTTCAGGTTAGAGACTGTGAACGTCAAGAAGCTACATAGCCTAGCCAAGGTCATCGGAACGTTGGTCACCTTGTCTGGAGCAATGATCATGACTTTGTACAAAGGCCCCATTATCGATGTTTTTCGGGGACACTCAAACAGCACCCAAAGTAGTAGCACCGAGTCAAGCGATCAGCATTGGATCGCTGGCCCCTTGATGCTCATAGCCAGCTGCGGCGGTTGGGCAAGTTTCTTTATCCTACAATCGTTCACATTGAAGAAGTACCCAGCACAGTTGTCTCTCACAGCCTGGATATGTGTAATGGGTGTGCTGGAAGGTGGAGTAGTGACACTTGTGATGGAACGCAAAATGAGTGTTTGGGTTATAGGTTGGGACTCAAGGCTTCTTGCTTCTGTTTACTCTGGAGTGATTTGTTCTGGACTTGCATATTATGTGCAAGGTGTTGTGAATAGAGAACGAGGCCCCGTTTTCGTGACATCTTTCAGCCCTCTTTGCATGATCATCACCGCCGTTCTAGGTGCCATCGTTTTAGCTGAGCAAGTCCACCTCGGAAGTATACTTGGAGCTATTCTCATTGTGTTCGGACTCTACACCGTGGTTTGGGGCAAAAGCAAAGACCCTGTGGCCTTGGACGAGCCATTGAAAGATGAGAAAGGTGTTAACCACGAACTGCCAGTCACTGCTGCAAATAATAGCATCAAGGGAAGTACCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003333 GO:0003674 GO:0005215 GO:0005342 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0005887 GO:0005938 GO:0006810 GO:0006811 GO:0006820 GO:0006865 GO:0007154 GO:0007165 GO:0008150 GO:0008509 GO:0008514 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009755 GO:0009987 GO:0010033 GO:0015075 GO:0015171 GO:0015179 GO:0015318 GO:0015562 GO:0015711 GO:0015807 GO:0015849 GO:0016020 GO:0016021 GO:0022857 GO:0023052 GO:0031224 GO:0031226 GO:0032870 GO:0032973 GO:0034220 GO:0034639 GO:0042221 GO:0042592 GO:0043090 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0046942 GO:0046943 GO:0048878 GO:0050789 GO:0050794 GO:0050801 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0055081 GO:0055085 GO:0065007 GO:0065008 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0071702 GO:0071705 GO:0071944 GO:0080144 GO:0098656 GO:0099568 GO:0140115 GO:1902475 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EamA

Protein Analysis

367

Amino Acids

40.03

Weight (kDa)

9.36

Isoelectric Point (pI)

30.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EamA	PF00892	22 - 152	1.2e-11	EamA-like transporter family
EamA	PF00892	193 - 330	7.8e-09	EamA-like transporter family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003116)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G21890 AT1G21890 AT1G44800 AT4G08300
fragaria_vesca	FvH4_2g26691 FvH4_2g26691 FvH4_2g26691 FvH4_2g26700
malus_domestica	MD00G1157200.v1.1 MD15G1351700.v1.1 MD15G1351800.v1.1
prunus_persica	Prupe.1G500400_v2.0.a1 Prupe.1G500400_v2.0.a1 Prupe.1G500500_v2.0.a1
pyrus_communis	pycom08g14190 pycom15g31510
rosa_chinensis	RchiOBHm_Chr6g0295541 RchiOBHm_Chr6g0295571
rosa_laevigata	RLG00000011789 RLG00000011792
rosa_multiflora	Rmu_sc0005000.1_g000009 Rmu_sc0005000.1_g000012
rosa_roxburghii	Rroxscaffold_7G00172360 Rroxscaffold_7G00172380
rosa_rugosa	Rorug06G0251800 Rorug06G0251900 Rorug06G0252000 Rorug06G0252100
rosa_samantha	Rh6AG365000 Rh6AG365200 Rh6BG373400 Rh6CG379600 Rh6CG379800 Rh6DG366100 Rh6DG366400
rosa_wichuraiana	Rw6G031880 Rw6G031890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	908
AccI	GTMKAC	1 cut(s)	946
AccII	CGCG	1 cut(s)	200
AciI	CCGC	3 cut(s)	603, 606, 897
AclI	AACGTT	1 cut(s)	449
AclWI	GGATC	1 cut(s)	578
AcuI	CTGAAG	1 cut(s)	376
AfaI	GTAC	6 cut(s)	104, 161, 320, 488, 653, 1099
AfiI	CCNNNNNNNGG	2 cut(s)	436, 990
AgsI	TTSAA	3 cut(s)	212, 646, 1033
AjnI	CCWGG	1 cut(s)	677
AluBI	AGCT	4 cut(s)	421, 600, 923, 956
AluI	AGCT	4 cut(s)	421, 600, 923, 956
Alw26I	GTCTC	4 cut(s)	79, 124, 395, 672
AlwI	GGATC	1 cut(s)	578
AlwNI	CAGNNNCTG	1 cut(s)	1070
AoxI	GGCC	5 cut(s)	224, 493, 577, 850, 1014
ApeKI	GCWGC	2 cut(s)	600, 1073
ArsI	GACNNNNNNTTYG	2 cut(s)	1050, 1082
AspS9I	GGNCC	3 cut(s)	494, 578, 851
AsuHPI	GGTGA	2 cut(s)	448, 886
BanI	GGYRCC	1 cut(s)	908
BbvCI	CCTCAGC	1 cut(s)	325
BbvI	GCAGC	2 cut(s)	587, 1060
BccI	CCATC	3 cut(s)	25, 721, 920
BceAI	ACGGC	1 cut(s)	884
BciT130I	CCWGG	1 cut(s)	679
BclI	TGATCA	2 cut(s)	474, 888
BcoDI	GTCTC	4 cut(s)	79, 124, 395, 672
BfaI	CTAG	2 cut(s)	431, 905
BfmI	CTRYAG	1 cut(s)	80
BisI	GCNGC	3 cut(s)	601, 604, 1074
BlpI	GCTNAGC	1 cut(s)	924
BlsI	GCNGC	3 cut(s)	602, 605, 1075
Bme1390I	CCNGG	1 cut(s)	679
BmgT120I	GGNCC	3 cut(s)	494, 578, 851
BmiI	GGNNCC	4 cut(s)	496, 580, 853, 910
BmrFI	CCNGG	1 cut(s)	679
BmsI	GCATC	3 cut(s)	347, 576, 1095
BoxI	GACNNNNGTC	1 cut(s)	12
BplI	GAGNNNNNCTC	2 cut(s)	945, 977
BpmI	CTGGAG	2 cut(s)	486, 813
Bpu10I	CCTNAGC	1 cut(s)	325
Bpu1102I	GCTNAGC	1 cut(s)	924
BpuEI	CTTGAG	3 cut(s)	29, 296, 751
Bsa29I	ATCGAT	1 cut(s)	504
BsaI	GGTCTC	2 cut(s)	79, 124
BsaJI	CCNNGG	4 cut(s)	435, 937, 984, 1017
Bsc4I	CCNNNNNNNGG	2 cut(s)	436, 990
Bse1I	ACTGG	3 cut(s)	281, 384, 1064
Bse3DI	GCAATG	2 cut(s)	186, 477
BseBI	CCWGG	1 cut(s)	679
BseCI	ATCGAT	1 cut(s)	504
BseDI	CCNNGG	4 cut(s)	435, 937, 984, 1017
BseLI	CCNNNNNNNGG	2 cut(s)	436, 990
BseMI	GCAATG	2 cut(s)	186, 477
BseMII	CTCAG	3 cut(s)	265, 339, 915
BseNI	ACTGG	3 cut(s)	281, 384, 1064
BseXI	GCAGC	2 cut(s)	587, 1060
BseYI	CCCAGC	1 cut(s)	655
Bsh1236I	CGCG	1 cut(s)	200
BshFI	GGCC	5 cut(s)	226, 495, 579, 852, 1016
BshNI	GGYRCC	1 cut(s)	908
BshVI	ATCGAT	1 cut(s)	504
BslFI	GGGAC	2 cut(s)	531, 776
BslI	CCNNNNNNNGG	2 cut(s)	436, 990
BsmAI	GTCTC	4 cut(s)	79, 124, 395, 672
BsmFI	GGGAC	2 cut(s)	531, 776
BsnI	GGCC	5 cut(s)	226, 495, 579, 852, 1016
Bso31I	GGTCTC	2 cut(s)	79, 124
Bsp1407I	TGTACA	2 cut(s)	102, 486
Bsp143I	GATC	5 cut(s)	51, 474, 559, 570, 888
Bsp1720I	GCTNAGC	1 cut(s)	924
BspACI	CCGC	3 cut(s)	603, 606, 897
BspANI	GGCC	5 cut(s)	226, 495, 579, 852, 1016
BspCNI	CTCAG	3 cut(s)	264, 338, 916
BspDI	ATCGAT	1 cut(s)	504
BspFNI	CGCG	1 cut(s)	200
BspHI	TCATGA	1 cut(s)	477
BspLI	GGNNCC	4 cut(s)	496, 580, 853, 910
BspMAI	CTGCAG	1 cut(s)	84
BspPI	GGATC	1 cut(s)	578
BspT107I	GGYRCC	1 cut(s)	908
BspTNI	GGTCTC	2 cut(s)	79, 124
BsrDI	GCAATG	2 cut(s)	186, 477
BsrGI	TGTACA	2 cut(s)	102, 486
BsrI	ACTGG	3 cut(s)	281, 384, 1064
BssECI	CCNNGG	4 cut(s)	435, 937, 984, 1017
BssMI	GATC	5 cut(s)	51, 474, 559, 570, 888
BssNAI	GTATAC	1 cut(s)	947
BssT1I	CCWWGG	2 cut(s)	435, 1017
Bst1107I	GTATAC	1 cut(s)	947
Bst2UI	CCWGG	1 cut(s)	679
Bst4CI	ACNGT	5 cut(s)	164, 349, 406, 663, 985
BstAPI	GCANNNNNTGC	1 cut(s)	335
BstAUI	TGTACA	2 cut(s)	102, 486
BstC8I	GCNNGC	3 cut(s)	97, 577, 598
BstDEI	CTNAG	4 cut(s)	27, 251, 325, 924
BstDSI	CCRYGG	1 cut(s)	984
BstEII	GGTNACC	1 cut(s)	454
BstENI	CCTNNNNNAGG	1 cut(s)	434
BstFNI	CGCG	1 cut(s)	200
BstKTI	GATC	5 cut(s)	54, 477, 562, 573, 891
BstMAI	GTCTC	4 cut(s)	79, 124, 395, 672
BstMBI	GATC	5 cut(s)	51, 474, 559, 570, 888
BstMWI	GCNNNNNNNGC	3 cut(s)	197, 335, 882
BstNI	CCWGG	1 cut(s)	679
BstNSI	RCATGY	1 cut(s)	103
BstPAI	GACNNNNGTC	1 cut(s)	12
BstPI	GGTNACC	1 cut(s)	454
BstSCI	CCNGG	1 cut(s)	677
BstSFI	CTRYAG	1 cut(s)	80
BstUI	CGCG	1 cut(s)	200
BstV1I	GCAGC	2 cut(s)	587, 1060
BstZ17I	GTATAC	1 cut(s)	947
Bsu15I	ATCGAT	1 cut(s)	504
BsuRI	GGCC	5 cut(s)	226, 495, 579, 852, 1016
BsuTUI	ATCGAT	1 cut(s)	504
BtgI	CCRYGG	1 cut(s)	984
BtsI	GCAGTG	1 cut(s)	1068
BtsIMutI	CAGTG	1 cut(s)	1068
Cac8I	GCNNGC	3 cut(s)	97, 577, 598
CaiI	CAGNNNCTG	1 cut(s)	1070
CciI	TCATGA	1 cut(s)	477
Cfr13I	GGNCC	3 cut(s)	494, 578, 851
ClaI	ATCGAT	1 cut(s)	504
Csp6I	GTAC	6 cut(s)	103, 160, 319, 487, 652, 1098
CviAII	CATG	6 cut(s)	100, 115, 131, 136, 478, 886
CviQI	GTAC	6 cut(s)	103, 160, 319, 487, 652, 1098
DdeI	CTNAG	4 cut(s)	27, 251, 325, 924
DpnI	GATC	5 cut(s)	53, 476, 561, 572, 890
DpnII	GATC	5 cut(s)	51, 474, 559, 570, 888
Eco130I	CCWWGG	2 cut(s)	435, 1017
Eco31I	GGTCTC	2 cut(s)	79, 124
Eco57I	CTGAAG	1 cut(s)	376
Eco91I	GGTNACC	1 cut(s)	454
EcoNI	CCTNNNNNAGG	1 cut(s)	434
EcoO109I	RGGNCCY	2 cut(s)	494, 851
EcoO65I	GGTNACC	1 cut(s)	454
EcoRII	CCWGG	1 cut(s)	677
EcoT14I	CCWWGG	2 cut(s)	435, 1017
ErhI	CCWWGG	2 cut(s)	435, 1017
FaeI	CATG	6 cut(s)	103, 118, 134, 139, 481, 889
FaqI	GGGAC	2 cut(s)	531, 776
FatI	CATG	6 cut(s)	99, 114, 130, 135, 477, 885
FbaI	TGATCA	2 cut(s)	474, 888
FblI	GTMKAC	1 cut(s)	946
Fnu4HI	GCNGC	3 cut(s)	601, 604, 1074
Fsp4HI	GCNGC	3 cut(s)	601, 604, 1074
FspBI	CTAG	2 cut(s)	431, 905
GluI	GCNGC	3 cut(s)	601, 604, 1074
GsaI	CCCAGC	1 cut(s)	659
GsuI	CTGGAG	2 cut(s)	486, 813
HaeIII	GGCC	5 cut(s)	226, 495, 579, 852, 1016
Hin1II	CATG	6 cut(s)	103, 118, 134, 139, 481, 889
HincII	GTYRAC	1 cut(s)	1051
HindII	GTYRAC	1 cut(s)	1051
HinfI	GANTC	5 cut(s)	139, 235, 551, 764, 975
HpaI	GTTAAC	1 cut(s)	1051
HphI	GGTGA	2 cut(s)	448, 886
Hpy166II	GTNNAC	8 cut(s)	160, 321, 409, 639, 787, 934, 947, 1051
Hpy188I	TCNGA	4 cut(s)	254, 446, 941, 974
Hpy8I	GTNNAC	8 cut(s)	160, 321, 409, 639, 787, 934, 947, 1051
HpyAV	CCTTC	4 cut(s)	187, 205, 368, 698
HpyCH4III	ACNGT	5 cut(s)	164, 349, 406, 663, 985
HpyCH4IV	ACGT	3 cut(s)	168, 411, 449
HpyCH4V	TGCA	9 cut(s)	82, 95, 191, 338, 344, 815, 826, 885, 1076
HpyF10VI	GCNNNNNNNGC	3 cut(s)	197, 335, 882
HpyF3I	CTNAG	4 cut(s)	27, 251, 325, 924
HpySE526I	ACGT	3 cut(s)	168, 411, 449
Hsp92II	CATG	6 cut(s)	103, 118, 134, 139, 481, 889
Ksp22I	TGATCA	2 cut(s)	474, 888
KspAI	GTTAAC	1 cut(s)	1051
Kzo9I	GATC	5 cut(s)	51, 474, 559, 570, 888
LmnI	GCTCC	2 cut(s)	467, 953
Lsp1109I	GCAGC	2 cut(s)	587, 1060
LweI	GCATC	3 cut(s)	347, 576, 1095
MaeI	CTAG	2 cut(s)	431, 905
MaeII	ACGT	3 cut(s)	168, 411, 449
MaeIII	GTNAC	6 cut(s)	140, 164, 454, 715, 862, 1066
MalI	GATC	5 cut(s)	53, 476, 561, 572, 890
MboI	GATC	5 cut(s)	51, 474, 559, 570, 888
MboII	GAAGA	2 cut(s)	61, 658
MlyI	GAGTC	5 cut(s)	148, 229, 560, 758, 969
MnlI	CCTC	5 cut(s)	260, 334, 842, 888, 947
MseI	TTAA	3 cut(s)	126, 351, 1050
MslI	CAYNNNNRTG	1 cut(s)	113
MspA1I	CMGCKG	1 cut(s)	600
MspR9I	CCNGG	1 cut(s)	679
MvaI	CCWGG	1 cut(s)	679
MvnI	CGCG	1 cut(s)	200
MwoI	GCNNNNNNNGC	3 cut(s)	197, 335, 882
NdeII	GATC	5 cut(s)	51, 474, 559, 570, 888
NlaIII	CATG	6 cut(s)	103, 118, 134, 139, 481, 889
NlaIV	GGNNCC	4 cut(s)	496, 580, 853, 910
NmuCI	GTSAC	6 cut(s)	140, 164, 454, 715, 862, 1066
NspI	RCATGY	1 cut(s)	103
PagI	TCATGA	1 cut(s)	477
PkrI	GCNGC	3 cut(s)	602, 605, 1075
PleI	GAGTC	5 cut(s)	147, 229, 559, 758, 969
PpsI	GAGTC	5 cut(s)	147, 229, 559, 758, 969
PshAI	GACNNNNGTC	1 cut(s)	12
Psp1406I	AACGTT	1 cut(s)	449
Psp6I	CCWGG	1 cut(s)	677
PspEI	GGTNACC	1 cut(s)	454
PspFI	CCCAGC	1 cut(s)	655
PspGI	CCWGG	1 cut(s)	677
PspN4I	GGNNCC	4 cut(s)	496, 580, 853, 910
PspPI	GGNCC	3 cut(s)	494, 578, 851
PstI	CTGCAG	1 cut(s)	84
PstNI	CAGNNNCTG	1 cut(s)	1070
PvuII	CAGCTG	1 cut(s)	600
RsaI	GTAC	6 cut(s)	104, 161, 320, 488, 653, 1099
RsaNI	GTAC	6 cut(s)	103, 160, 319, 487, 652, 1098
RseI	CAYNNNNRTG	1 cut(s)	113
SaqAI	TTAA	3 cut(s)	126, 351, 1050
SatI	GCNGC	3 cut(s)	601, 604, 1074
Sau3AI	GATC	5 cut(s)	51, 474, 559, 570, 888
Sau96I	GGNCC	3 cut(s)	494, 578, 851
SchI	GAGTC	5 cut(s)	148, 229, 560, 758, 969
ScrFI	CCNGG	1 cut(s)	679
SfaNI	GCATC	3 cut(s)	347, 576, 1095
SfcI	CTRYAG	1 cut(s)	80
SmiMI	CAYNNNNRTG	1 cut(s)	113
SmlI	CTYRAG	3 cut(s)	44, 275, 766
SmoI	CTYRAG	3 cut(s)	44, 275, 766
SsiI	CCGC	3 cut(s)	603, 606, 897
SspMI	CTAG	2 cut(s)	431, 905
StyD4I	CCNGG	1 cut(s)	677
StyI	CCWWGG	2 cut(s)	435, 1017
TaaI	ACNGT	5 cut(s)	164, 349, 406, 663, 985
TaiI	ACGT	3 cut(s)	171, 414, 452
TaqI	TCGA	1 cut(s)	504
TatI	WGTACW	3 cut(s)	102, 318, 486
TauI	GCSGC	1 cut(s)	606
Tru1I	TTAA	3 cut(s)	126, 351, 1050
Tru9I	TTAA	3 cut(s)	126, 351, 1050
TscAI	CASTG	1 cut(s)	1075
TseFI	GTSAC	6 cut(s)	140, 164, 454, 715, 862, 1066
TseI	GCWGC	2 cut(s)	600, 1073
Tsp45I	GTSAC	6 cut(s)	140, 164, 454, 715, 862, 1066
TspDTI	ATGAA	1 cut(s)	329
TspRI	CASTG	1 cut(s)	1075
XagI	CCTNNNNNAGG	1 cut(s)	434
XceI	RCATGY	1 cut(s)	103
XcmI	CCANNNNNNNNNTGG	1 cut(s)	17
XmiI	GTMKAC	1 cut(s)	946
XspI	CTAG	2 cut(s)	431, 905

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.