Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0003116

Physical Location & Seq

Genomic Coordinates Reverse (-)

12621295 .. 12623707

Gene Structure 2413 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00172380.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1050 bp

ATGGGAGACCAAAGTCCATCTGGGTCTAAGATGAGTGTGTTTCTCAAGAAGATCAAACCTTATTTGGCTATGGTCTCCCTGCAGTTTGGGTATGCAGGCATGTACATCATAAGCATGGTCTCGTTTAAGCATGGCATGAGTCACTTTGTCTTGTCGGTGTACCGTCACGTTGTTGCCCTCTGTGTCATTGCACCCTTCGCGTTGGTTCTTGAAAGGCCAGTTCTTGACCAGAACTTGTACTTTCTGGGAATGAAGTACACCTCAGCAACATTTGCATCAGCAACTGTTAATGTCCTTCCTGCCATAACCTTTATACTGGCACTTTGCTTCAGGTTAGAGACTGTGAACGTCAAGAAGCTACATAGCCTAGCCAAGGTCATCGGAACGTTGGTCACCTTGTCTGGAGCAATGATCATGACTTTGTACAAAGGCCCCATTATCGATGTTGTACGGGGACACTCAAACAGCACCCAAAGTAGTAGCACCGAGTCAAGCGATCAGCATTGGATCGTTGGCCCCCTTGATGCTCATAGCCAGTTGCGGCGGTTGGGCAAGTTTCTTTATCCTACAAGTGAGTCATCTTACATACATTTATCGTTCACATTGAAGAAGTACCCAGCACAGTTGTCTCTCACAGCCTGGATATGTGTAATGGGTGTGCTGGAAGGTGGAGTAGTGACACTTGTGATGGAACGCAAAATGAGTGTTTGGGTTATAGGTTGGGACTCAAGGCTTCTTGCTTCTGTTTACTCTGGGGTGATTTGTTCTGGACTTGCATATTATGTGCAAGGTGTTGTGAATAGAGAACGAGGCCCCGTTTTCGTGACATCTTTCAGCCCTCTTTGCATGATCATCACCGCCATTCTAGGTGCCATCGTTTTAGCTGAGCAAGTCCACCTCGGAAGTATACTCGGAGCTATTCTCATTGTGTTCGGACTCTACACCGTGGTTTGGGGCAAAAGCAAAGACCCTGTGGCCTTGGACGAGCCATTGAAAGATGAGAAAGGTGTTAACCACGAACTGCCAGTCACTGCTGCAAATAATATATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003333 GO:0003674 GO:0005215 GO:0005342 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0005887 GO:0005938 GO:0006810 GO:0006811 GO:0006820 GO:0006865 GO:0007154 GO:0007165 GO:0008150 GO:0008509 GO:0008514 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009755 GO:0009987 GO:0010033 GO:0015075 GO:0015171 GO:0015179 GO:0015318 GO:0015562 GO:0015711 GO:0015807 GO:0015849 GO:0016020 GO:0016021 GO:0022857 GO:0023052 GO:0031224 GO:0031226 GO:0032870 GO:0032973 GO:0034220 GO:0034639 GO:0042221 GO:0042592 GO:0043090 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0046942 GO:0046943 GO:0048878 GO:0050789 GO:0050794 GO:0050801 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0055081 GO:0055085 GO:0065007 GO:0065008 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0071702 GO:0071705 GO:0071944 GO:0080144 GO:0098656 GO:0099568 GO:0140115 GO:1902475 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EamA

Protein Analysis

349

Amino Acids

38.11

Weight (kDa)

9.16

Isoelectric Point (pI)

35.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EamA	PF00892	201 - 317	1.1e-06	EamA-like transporter family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003116)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G21890 AT1G21890 AT1G44800 AT4G08300
fragaria_vesca	FvH4_2g26691 FvH4_2g26691 FvH4_2g26691 FvH4_2g26700
malus_domestica	MD00G1157200.v1.1 MD15G1351700.v1.1 MD15G1351800.v1.1
prunus_persica	Prupe.1G500400_v2.0.a1 Prupe.1G500400_v2.0.a1 Prupe.1G500500_v2.0.a1
pyrus_communis	pycom08g14190 pycom15g31510
rosa_chinensis	RchiOBHm_Chr6g0295541 RchiOBHm_Chr6g0295571
rosa_laevigata	RLG00000011789 RLG00000011792
rosa_multiflora	Rmu_sc0005000.1_g000009 Rmu_sc0005000.1_g000012
rosa_roxburghii	Rroxscaffold_7G00172360 Rroxscaffold_7G00172380
rosa_rugosa	Rorug06G0251800 Rorug06G0251900 Rorug06G0252000 Rorug06G0252100
rosa_samantha	Rh6AG365000 Rh6AG365200 Rh6BG373400 Rh6CG379600 Rh6CG379800 Rh6DG366100 Rh6DG366400
rosa_wichuraiana	Rw6G031880 Rw6G031890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	869
AccI	GTMKAC	1 cut(s)	907
AccII	CGCG	1 cut(s)	200
AciI	CCGC	3 cut(s)	541, 544, 858
AclI	AACGTT	1 cut(s)	386
AclWI	GGATC	1 cut(s)	515
AcuI	CTGAAG	1 cut(s)	313
AfaI	GTAC	7 cut(s)	104, 161, 239, 257, 425, 450, 614
AfiI	CCNNNNNNNGG	2 cut(s)	373, 951
AgsI	TTSAA	3 cut(s)	212, 607, 994
AjnI	CCWGG	1 cut(s)	638
AluBI	AGCT	3 cut(s)	358, 884, 917
AluI	AGCT	3 cut(s)	358, 884, 917
Alw26I	GTCTC	4 cut(s)	79, 124, 332, 633
AlwI	GGATC	1 cut(s)	515
AlwNI	CAGNNNCTG	2 cut(s)	284, 1031
AoxI	GGCC	5 cut(s)	215, 430, 514, 811, 975
ApeKI	GCWGC	1 cut(s)	1034
ArsI	GACNNNNNNTTYG	2 cut(s)	1011, 1043
AspS9I	GGNCC	3 cut(s)	431, 515, 812
AsuHPI	GGTGA	3 cut(s)	385, 769, 847
BanI	GGYRCC	1 cut(s)	869
BbvCI	CCTCAGC	1 cut(s)	262
BbvI	GCAGC	1 cut(s)	1021
BccI	CCATC	3 cut(s)	25, 682, 881
BciT130I	CCWGG	1 cut(s)	640
BclI	TGATCA	2 cut(s)	411, 849
BcoDI	GTCTC	4 cut(s)	79, 124, 332, 633
BfaI	CTAG	2 cut(s)	368, 866
BfmI	CTRYAG	1 cut(s)	80
BisI	GCNGC	2 cut(s)	542, 1035
BlpI	GCTNAGC	1 cut(s)	885
BlsI	GCNGC	2 cut(s)	543, 1036
Bme1390I	CCNGG	1 cut(s)	640
BmgT120I	GGNCC	3 cut(s)	431, 515, 812
BmiI	GGNNCC	4 cut(s)	433, 517, 814, 871
BmrFI	CCNGG	1 cut(s)	640
BmsI	GCATC	2 cut(s)	284, 514
BoxI	GACNNNNGTC	1 cut(s)	12
BplI	GAGNNNNNCTC	2 cut(s)	906, 938
BpmI	CTGGAG	1 cut(s)	423
Bpu10I	CCTNAGC	1 cut(s)	262
Bpu1102I	GCTNAGC	1 cut(s)	885
BpuEI	CTTGAG	2 cut(s)	29, 712
Bsa29I	ATCGAT	1 cut(s)	441
BsaI	GGTCTC	2 cut(s)	79, 124
BsaJI	CCNNGG	4 cut(s)	372, 898, 945, 978
Bsc4I	CCNNNNNNNGG	2 cut(s)	373, 951
Bse1I	ACTGG	4 cut(s)	218, 321, 535, 1025
Bse3DI	GCAATG	2 cut(s)	186, 414
BseBI	CCWGG	1 cut(s)	640
BseCI	ATCGAT	1 cut(s)	441
BseDI	CCNNGG	4 cut(s)	372, 898, 945, 978
BseLI	CCNNNNNNNGG	2 cut(s)	373, 951
BseMI	GCAATG	2 cut(s)	186, 414
BseMII	CTCAG	2 cut(s)	276, 876
BseNI	ACTGG	4 cut(s)	218, 321, 535, 1025
BseXI	GCAGC	1 cut(s)	1021
BseYI	CCCAGC	1 cut(s)	616
Bsh1236I	CGCG	1 cut(s)	200
BshFI	GGCC	5 cut(s)	217, 432, 516, 813, 977
BshNI	GGYRCC	1 cut(s)	869
BshVI	ATCGAT	1 cut(s)	441
BslFI	GGGAC	2 cut(s)	468, 737
BslI	CCNNNNNNNGG	2 cut(s)	373, 951
BsmAI	GTCTC	4 cut(s)	79, 124, 332, 633
BsmFI	GGGAC	2 cut(s)	468, 737
BsnI	GGCC	5 cut(s)	217, 432, 516, 813, 977
Bso31I	GGTCTC	2 cut(s)	79, 124
Bsp1407I	TGTACA	2 cut(s)	102, 423
Bsp143I	GATC	5 cut(s)	51, 411, 496, 507, 849
Bsp1720I	GCTNAGC	1 cut(s)	885
BspACI	CCGC	3 cut(s)	541, 544, 858
BspANI	GGCC	5 cut(s)	217, 432, 516, 813, 977
BspCNI	CTCAG	2 cut(s)	275, 877
BspDI	ATCGAT	1 cut(s)	441
BspFNI	CGCG	1 cut(s)	200
BspHI	TCATGA	1 cut(s)	414
BspLI	GGNNCC	4 cut(s)	433, 517, 814, 871
BspMAI	CTGCAG	1 cut(s)	84
BspPI	GGATC	1 cut(s)	515
BspT107I	GGYRCC	1 cut(s)	869
BspTNI	GGTCTC	2 cut(s)	79, 124
BsrDI	GCAATG	2 cut(s)	186, 414
BsrGI	TGTACA	2 cut(s)	102, 423
BsrI	ACTGG	4 cut(s)	218, 321, 535, 1025
BssECI	CCNNGG	4 cut(s)	372, 898, 945, 978
BssMI	GATC	5 cut(s)	51, 411, 496, 507, 849
BssNAI	GTATAC	1 cut(s)	908
BssT1I	CCWWGG	2 cut(s)	372, 978
Bst1107I	GTATAC	1 cut(s)	908
Bst2UI	CCWGG	1 cut(s)	640
Bst4CI	ACNGT	5 cut(s)	164, 286, 343, 624, 946
BstAPI	GCANNNNNTGC	1 cut(s)	272
BstAUI	TGTACA	2 cut(s)	102, 423
BstC8I	GCNNGC	1 cut(s)	97
BstDEI	CTNAG	3 cut(s)	27, 262, 885
BstDSI	CCRYGG	1 cut(s)	945
BstEII	GGTNACC	1 cut(s)	391
BstENI	CCTNNNNNAGG	1 cut(s)	371
BstFNI	CGCG	1 cut(s)	200
BstKTI	GATC	5 cut(s)	54, 414, 499, 510, 852
BstMAI	GTCTC	4 cut(s)	79, 124, 332, 633
BstMBI	GATC	5 cut(s)	51, 411, 496, 507, 849
BstMWI	GCNNNNNNNGC	3 cut(s)	197, 272, 843
BstNI	CCWGG	1 cut(s)	640
BstNSI	RCATGY	1 cut(s)	103
BstPAI	GACNNNNGTC	1 cut(s)	12
BstPI	GGTNACC	1 cut(s)	391
BstSCI	CCNGG	1 cut(s)	638
BstSFI	CTRYAG	1 cut(s)	80
BstUI	CGCG	1 cut(s)	200
BstV1I	GCAGC	1 cut(s)	1021
BstZ17I	GTATAC	1 cut(s)	908
Bsu15I	ATCGAT	1 cut(s)	441
BsuRI	GGCC	5 cut(s)	217, 432, 516, 813, 977
BsuTUI	ATCGAT	1 cut(s)	441
BtgI	CCRYGG	1 cut(s)	945
BtsI	GCAGTG	1 cut(s)	1029
BtsIMutI	CAGTG	1 cut(s)	1029
Cac8I	GCNNGC	1 cut(s)	97
CaiI	CAGNNNCTG	2 cut(s)	284, 1031
CciI	TCATGA	1 cut(s)	414
Cfr13I	GGNCC	3 cut(s)	431, 515, 812
ClaI	ATCGAT	1 cut(s)	441
Csp6I	GTAC	7 cut(s)	103, 160, 238, 256, 424, 449, 613
CviAII	CATG	6 cut(s)	100, 115, 131, 136, 415, 847
CviQI	GTAC	7 cut(s)	103, 160, 238, 256, 424, 449, 613
DdeI	CTNAG	3 cut(s)	27, 262, 885
DpnI	GATC	5 cut(s)	53, 413, 498, 509, 851
DpnII	GATC	5 cut(s)	51, 411, 496, 507, 849
Eco130I	CCWWGG	2 cut(s)	372, 978
Eco31I	GGTCTC	2 cut(s)	79, 124
Eco57I	CTGAAG	1 cut(s)	313
Eco91I	GGTNACC	1 cut(s)	391
EcoNI	CCTNNNNNAGG	1 cut(s)	371
EcoO109I	RGGNCCY	2 cut(s)	431, 812
EcoO65I	GGTNACC	1 cut(s)	391
EcoRII	CCWGG	1 cut(s)	638
EcoT14I	CCWWGG	2 cut(s)	372, 978
ErhI	CCWWGG	2 cut(s)	372, 978
FaeI	CATG	6 cut(s)	103, 118, 134, 139, 418, 850
FaqI	GGGAC	2 cut(s)	468, 737
FatI	CATG	6 cut(s)	99, 114, 130, 135, 414, 846
FbaI	TGATCA	2 cut(s)	411, 849
FblI	GTMKAC	1 cut(s)	907
Fnu4HI	GCNGC	2 cut(s)	542, 1035
Fsp4HI	GCNGC	2 cut(s)	542, 1035
FspBI	CTAG	2 cut(s)	368, 866
GluI	GCNGC	2 cut(s)	542, 1035
GsaI	CCCAGC	1 cut(s)	620
GsuI	CTGGAG	1 cut(s)	423
HaeIII	GGCC	5 cut(s)	217, 432, 516, 813, 977
Hin1II	CATG	6 cut(s)	103, 118, 134, 139, 418, 850
HincII	GTYRAC	1 cut(s)	1012
HindII	GTYRAC	1 cut(s)	1012
HinfI	GANTC	5 cut(s)	139, 488, 575, 725, 936
HpaI	GTTAAC	1 cut(s)	1012
HphI	GGTGA	3 cut(s)	385, 769, 847
Hpy166II	GTNNAC	8 cut(s)	160, 258, 346, 600, 748, 895, 908, 1012
Hpy188I	TCNGA	4 cut(s)	383, 902, 914, 935
Hpy188III	TCNNGA	8 cut(s)	46, 209, 224, 352, 402, 415, 768, 823
Hpy8I	GTNNAC	8 cut(s)	160, 258, 346, 600, 748, 895, 908, 1012
HpyAV	CCTTC	3 cut(s)	205, 305, 659
HpyCH4III	ACNGT	5 cut(s)	164, 286, 343, 624, 946
HpyCH4IV	ACGT	3 cut(s)	168, 348, 386
HpyCH4V	TGCA	8 cut(s)	82, 95, 191, 275, 776, 787, 846, 1037
HpyF10VI	GCNNNNNNNGC	3 cut(s)	197, 272, 843
HpyF3I	CTNAG	3 cut(s)	27, 262, 885
HpySE526I	ACGT	3 cut(s)	168, 348, 386
Hsp92II	CATG	6 cut(s)	103, 118, 134, 139, 418, 850
Ksp22I	TGATCA	2 cut(s)	411, 849
KspAI	GTTAAC	1 cut(s)	1012
Kzo9I	GATC	5 cut(s)	51, 411, 496, 507, 849
LmnI	GCTCC	2 cut(s)	404, 914
Lsp1109I	GCAGC	1 cut(s)	1021
LweI	GCATC	2 cut(s)	284, 514
MaeI	CTAG	2 cut(s)	368, 866
MaeII	ACGT	3 cut(s)	168, 348, 386
MaeIII	GTNAC	6 cut(s)	140, 164, 391, 676, 823, 1027
MalI	GATC	5 cut(s)	53, 413, 498, 509, 851
MboI	GATC	5 cut(s)	51, 411, 496, 507, 849
MboII	GAAGA	2 cut(s)	61, 619
MlyI	GAGTC	5 cut(s)	148, 497, 584, 719, 930
MnlI	CCTC	5 cut(s)	188, 271, 803, 849, 908
MseI	TTAA	3 cut(s)	126, 288, 1011
MslI	CAYNNNNRTG	1 cut(s)	113
MspR9I	CCNGG	1 cut(s)	640
MvaI	CCWGG	1 cut(s)	640
MvnI	CGCG	1 cut(s)	200
MwoI	GCNNNNNNNGC	3 cut(s)	197, 272, 843
NdeII	GATC	5 cut(s)	51, 411, 496, 507, 849
NlaIII	CATG	6 cut(s)	103, 118, 134, 139, 418, 850
NlaIV	GGNNCC	4 cut(s)	433, 517, 814, 871
NmuCI	GTSAC	6 cut(s)	140, 164, 391, 676, 823, 1027
NspI	RCATGY	1 cut(s)	103
PagI	TCATGA	1 cut(s)	414
PkrI	GCNGC	2 cut(s)	543, 1036
PleI	GAGTC	5 cut(s)	147, 496, 583, 719, 930
PpsI	GAGTC	5 cut(s)	147, 496, 583, 719, 930
PshAI	GACNNNNGTC	1 cut(s)	12
Psp1406I	AACGTT	1 cut(s)	386
Psp6I	CCWGG	1 cut(s)	638
PspEI	GGTNACC	1 cut(s)	391
PspFI	CCCAGC	1 cut(s)	616
PspGI	CCWGG	1 cut(s)	638
PspN4I	GGNNCC	4 cut(s)	433, 517, 814, 871
PspPI	GGNCC	3 cut(s)	431, 515, 812
PstI	CTGCAG	1 cut(s)	84
PstNI	CAGNNNCTG	2 cut(s)	284, 1031
RsaI	GTAC	7 cut(s)	104, 161, 239, 257, 425, 450, 614
RsaNI	GTAC	7 cut(s)	103, 160, 238, 256, 424, 449, 613
RseI	CAYNNNNRTG	1 cut(s)	113
SaqAI	TTAA	3 cut(s)	126, 288, 1011
SatI	GCNGC	2 cut(s)	542, 1035
Sau3AI	GATC	5 cut(s)	51, 411, 496, 507, 849
Sau96I	GGNCC	3 cut(s)	431, 515, 812
SchI	GAGTC	5 cut(s)	148, 497, 584, 719, 930
ScrFI	CCNGG	1 cut(s)	640
SfaNI	GCATC	2 cut(s)	284, 514
SfcI	CTRYAG	1 cut(s)	80
SmiMI	CAYNNNNRTG	1 cut(s)	113
SmlI	CTYRAG	2 cut(s)	44, 727
SmoI	CTYRAG	2 cut(s)	44, 727
SsiI	CCGC	3 cut(s)	541, 544, 858
SspMI	CTAG	2 cut(s)	368, 866
StyD4I	CCNGG	1 cut(s)	638
StyI	CCWWGG	2 cut(s)	372, 978
TaaI	ACNGT	5 cut(s)	164, 286, 343, 624, 946
TaiI	ACGT	3 cut(s)	171, 351, 389
TaqI	TCGA	1 cut(s)	441
TatI	WGTACW	4 cut(s)	102, 237, 255, 423
TauI	GCSGC	1 cut(s)	544
Tru1I	TTAA	3 cut(s)	126, 288, 1011
Tru9I	TTAA	3 cut(s)	126, 288, 1011
TscAI	CASTG	1 cut(s)	1036
TseFI	GTSAC	6 cut(s)	140, 164, 391, 676, 823, 1027
TseI	GCWGC	1 cut(s)	1034
Tsp45I	GTSAC	6 cut(s)	140, 164, 391, 676, 823, 1027
TspDTI	ATGAA	1 cut(s)	266
TspRI	CASTG	1 cut(s)	1036
XagI	CCTNNNNNAGG	1 cut(s)	371
XceI	RCATGY	1 cut(s)	103
XcmI	CCANNNNNNNNNTGG	1 cut(s)	17
XmiI	GTMKAC	1 cut(s)	907
XspI	CTAG	2 cut(s)	368, 866

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.