Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0003116

Physical Location & Seq

Genomic Coordinates Reverse (-)

39803493 .. 39804568

Gene Structure 1076 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0252100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 975 bp

ATGTTGGGGGCCTGGTCTTCAGAAGCCACTTCTCGCAGCCTGCAAGATGCATTAATGTATGGGAGATACGAGCAATGGATGACTCGTTACGGACGCGTATACACTGACACTGATGAGAAGGAGAAGCGCTTCAAGATATTCAAGGAAAATGTAGCATTTATAGAATCTTCCAATGACAAAGCAAACAAACCTTACAAACTAAGTGTCAATGGATTTGCAGACCTTACAAATAAAGAGTTCACAGCCTCAAGAAATCGATTTAAGGCTCATGAATGTTCCACAAAGACCACTTCTTTCAAATATGAAAATGCCACTGTGCCAGCAACAATGGACTGGAGACAGAAAGGAGCTGTTACCCCAATCAAGGACCAAGGCCAATGTGGTTGTTGTTGGGCGTTCTCAGCAGTGGCAGCCATGGAAGGAATTACTCAACTCACAACTGGTAAACTGATTTCTTTGTCCGAGCAAGAGCTGGTTGACTGTGATGTTAATGGTGAAGACCAAGGCTGTGAGGGTGGCCTCATGGATGATGCCTTTCAGTTCATCAATCAAAACCATGGACTAAGTACCGAGGCCAATTATCCCTACACAGGTGTTGATGGTACATGCAATGCTAAGAAGGAAGCAAACCATGCAGCCTCGATAACTGGCCACGAAGATGTGCCTGCAAACAGTGAAAGCGCCCTACTTAATGCTGTTGCTAATCAACCTATTTCTATTGCCATTGACGCCAGCGGATCTGATTTCCAATTCTATGCAAGTGGTGTTTTCACAGGAACATGCGGAACGAGCCTAGACCATGGTGTTACCGTTGTTGGTTATGGTGTCAGCGATGATGGGACTAAGTATTGGTTGGTGAAGAACTCATGGGGGGCAGAATGGGGCGAACAAGGGTACATAAGAATGCAAAGAGATGTTGATGCACCGGAAGGCCTCTGTGGTATTGCTATGGAAGCCTCTTATCCCACTGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003333 GO:0003674 GO:0005215 GO:0005342 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006820 GO:0006865 GO:0008150 GO:0008509 GO:0008514 GO:0015075 GO:0015171 GO:0015318 GO:0015711 GO:0015849 GO:0016020 GO:0022857 GO:0032973 GO:0034220 GO:0042592 GO:0043090 GO:0044464 GO:0046942 GO:0046943 GO:0048878 GO:0050801 GO:0051179 GO:0051234 GO:0055081 GO:0055085 GO:0065007 GO:0065008 GO:0071702 GO:0071705 GO:0071944 GO:0080144 GO:0098656 GO:0140115 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EamA

Protein Analysis

324

Amino Acids

35.37

Weight (kDa)

4.78

Isoelectric Point (pI)

18.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Inhibitor_I29	PF08246	23 - 80	3.9e-19	Cathepsin propeptide inhibitor domain (I29)
Peptidase_C1	PF00112	106 - 323	6.3e-85	Papain family cysteine protease

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003116)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G21890 AT1G21890 AT1G44800 AT4G08300
fragaria_vesca	FvH4_2g26691 FvH4_2g26691 FvH4_2g26691 FvH4_2g26700
malus_domestica	MD00G1157200.v1.1 MD15G1351700.v1.1 MD15G1351800.v1.1
prunus_persica	Prupe.1G500400_v2.0.a1 Prupe.1G500400_v2.0.a1 Prupe.1G500500_v2.0.a1
pyrus_communis	pycom08g14190 pycom15g31510
rosa_chinensis	RchiOBHm_Chr6g0295541 RchiOBHm_Chr6g0295571
rosa_laevigata	RLG00000011789 RLG00000011792
rosa_multiflora	Rmu_sc0005000.1_g000009 Rmu_sc0005000.1_g000012
rosa_roxburghii	Rroxscaffold_7G00172360 Rroxscaffold_7G00172380
rosa_rugosa	Rorug06G0251800 Rorug06G0251900 Rorug06G0252000 Rorug06G0252100
rosa_samantha	Rh6AG365000 Rh6AG365200 Rh6BG373400 Rh6CG379600 Rh6CG379800 Rh6DG366100 Rh6DG366400
rosa_wichuraiana	Rw6G031880 Rw6G031890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	99
AccII	CGCG	1 cut(s)	96
AciI	CCGC	2 cut(s)	735, 783
AclWI	GGATC	1 cut(s)	745
AcoI	YGGCCR	1 cut(s)	649
AcyI	GRCGYC	1 cut(s)	729
AfaI	GTAC	3 cut(s)	568, 604, 896
AfeI	AGCGCT	1 cut(s)	128
AfiI	CCNNNNNNNGG	2 cut(s)	364, 590
AflIII	ACRYGT	1 cut(s)	94
AgsI	TTSAA	3 cut(s)	133, 142, 298
AjnI	CCWGG	1 cut(s)	11
AluBI	AGCT	2 cut(s)	350, 472
AluI	AGCT	2 cut(s)	350, 472
Alw26I	GTCTC	1 cut(s)	331
AlwI	GGATC	1 cut(s)	745
Aor51HI	AGCGCT	1 cut(s)	128
AoxI	GGCC	6 cut(s)	9, 373, 517, 573, 649, 931
ApeKI	GCWGC	3 cut(s)	36, 410, 635
ArsI	GACNNNNNNTTYG	2 cut(s)	189, 221
AseI	ATTAAT	1 cut(s)	53
Asp700I	GAANNNNTTC	1 cut(s)	128
AspLEI	GCGC	2 cut(s)	129, 683
AspS9I	GGNCC	2 cut(s)	9, 367
AsuHPI	GGTGA	2 cut(s)	506, 868
AvaII	GGWCC	1 cut(s)	367
BalI	TGGCCA	1 cut(s)	651
BbsI	GAAGAC	2 cut(s)	9, 504
BbvI	GCAGC	3 cut(s)	48, 422, 647
BccI	CCATC	2 cut(s)	593, 830
BciT130I	CCWGG	1 cut(s)	13
BcoDI	GTCTC	1 cut(s)	331
BfaI	CTAG	1 cut(s)	794
BfoI	RGCGCY	2 cut(s)	130, 684
BisI	GCNGC	3 cut(s)	37, 411, 636
BlsI	GCNGC	3 cut(s)	38, 412, 637
Bme1390I	CCNGG	1 cut(s)	13
Bme18I	GGWCC	1 cut(s)	367
BmgT120I	GGNCC	2 cut(s)	9, 367
BmiI	GGNNCC	1 cut(s)	10
BmrFI	CCNGG	1 cut(s)	13
BmsI	GCATC	3 cut(s)	37, 520, 910
BpiI	GAAGAC	2 cut(s)	9, 504
BpmI	CTGGAG	1 cut(s)	355
BpuEI	CTTGAG	1 cut(s)	232
Bsa29I	ATCGAT	1 cut(s)	256
BsaHI	GRCGYC	1 cut(s)	729
BsaJI	CCNNGG	6 cut(s)	370, 414, 502, 556, 570, 799
BsaWI	WCCGGW	1 cut(s)	925
Bsc4I	CCNNNNNNNGG	2 cut(s)	364, 590
Bse1I	ACTGG	3 cut(s)	338, 445, 652
Bse3DI	GCAATG	2 cut(s)	80, 616
BseBI	CCWGG	1 cut(s)	13
BseCI	ATCGAT	1 cut(s)	256
BseDI	CCNNGG	6 cut(s)	370, 414, 502, 556, 570, 799
BseGI	GGATG	2 cut(s)	84, 532
BseLI	CCNNNNNNNGG	2 cut(s)	364, 590
BseMI	GCAATG	2 cut(s)	80, 616
BseMII	CTCAG	1 cut(s)	414
BseNI	ACTGG	3 cut(s)	338, 445, 652
BseXI	GCAGC	3 cut(s)	48, 422, 647
Bsh1236I	CGCG	1 cut(s)	96
BshFI	GGCC	6 cut(s)	11, 375, 519, 575, 651, 933
BshVI	ATCGAT	1 cut(s)	256
BsiSI	CCGG	1 cut(s)	926
BslFI	GGGAC	1 cut(s)	853
BslI	CCNNNNNNNGG	2 cut(s)	364, 590
BsmAI	GTCTC	1 cut(s)	331
BsmFI	GGGAC	1 cut(s)	853
BsmI	GAATGC	1 cut(s)	909
BsnI	GGCC	6 cut(s)	11, 375, 519, 575, 651, 933
Bsp143I	GATC	1 cut(s)	737
Bsp19I	CCATGG	3 cut(s)	414, 556, 799
BspACI	CCGC	2 cut(s)	735, 783
BspANI	GGCC	6 cut(s)	11, 375, 519, 575, 651, 933
BspCNI	CTCAG	1 cut(s)	413
BspDI	ATCGAT	1 cut(s)	256
BspFNI	CGCG	1 cut(s)	96
BspHI	TCATGA	1 cut(s)	268
BspLI	GGNNCC	1 cut(s)	10
BspPI	GGATC	1 cut(s)	745
BsrDI	GCAATG	2 cut(s)	80, 616
BsrI	ACTGG	3 cut(s)	338, 445, 652
BssECI	CCNNGG	6 cut(s)	370, 414, 502, 556, 570, 799
BssMI	GATC	1 cut(s)	737
BssNAI	GTATAC	1 cut(s)	100
BssNI	GRCGYC	1 cut(s)	729
BssT1I	CCWWGG	5 cut(s)	370, 414, 502, 556, 799
Bst1107I	GTATAC	1 cut(s)	100
Bst2UI	CCWGG	1 cut(s)	13
Bst4CI	ACNGT	4 cut(s)	316, 482, 674, 811
BstACI	GRCGYC	1 cut(s)	729
BstAPI	GCANNNNNTGC	1 cut(s)	632
BstC8I	GCNNGC	4 cut(s)	41, 321, 666, 733
BstDEI	CTNAG	5 cut(s)	200, 400, 563, 615, 843
BstDSI	CCRYGG	3 cut(s)	414, 556, 799
BstF5I	GGATG	2 cut(s)	84, 532
BstFNI	CGCG	1 cut(s)	96
BstH2I	RGCGCY	2 cut(s)	130, 684
BstHHI	GCGC	2 cut(s)	129, 683
BstKTI	GATC	1 cut(s)	740
BstMAI	GTCTC	1 cut(s)	331
BstMBI	GATC	1 cut(s)	737
BstMWI	GCNNNNNNNGC	6 cut(s)	401, 410, 632, 728, 789, 953
BstNI	CCWGG	1 cut(s)	13
BstNSI	RCATGY	2 cut(s)	609, 783
BstSCI	CCNGG	1 cut(s)	11
BstUI	CGCG	1 cut(s)	96
BstV1I	GCAGC	3 cut(s)	48, 422, 647
BstV2I	GAAGAC	2 cut(s)	9, 504
BstX2I	RGATCY	1 cut(s)	737
BstYI	RGATCY	1 cut(s)	737
BstZ17I	GTATAC	1 cut(s)	100
Bsu15I	ATCGAT	1 cut(s)	256
BsuRI	GGCC	6 cut(s)	11, 375, 519, 575, 651, 933
BsuTUI	ATCGAT	1 cut(s)	256
BtgI	CCRYGG	3 cut(s)	414, 556, 799
BtgZI	GCGATG	1 cut(s)	846
BtsCI	GGATG	2 cut(s)	84, 532
BtsI	GCAGTG	2 cut(s)	411, 966
BtsIMutI	CAGTG	6 cut(s)	102, 108, 312, 411, 679, 966
Cac8I	GCNNGC	4 cut(s)	41, 321, 666, 733
CciI	TCATGA	1 cut(s)	268
CfoI	GCGC	2 cut(s)	129, 683
Cfr13I	GGNCC	2 cut(s)	9, 367
ClaI	ATCGAT	1 cut(s)	256
CseI	GACGC	2 cut(s)	102, 737
Csp6I	GTAC	3 cut(s)	567, 603, 895
CviAII	CATG	9 cut(s)	269, 415, 523, 557, 606, 632, 780, 800, 867
CviQI	GTAC	3 cut(s)	567, 603, 895
DdeI	CTNAG	5 cut(s)	200, 400, 563, 615, 843
DpnI	GATC	1 cut(s)	739
DpnII	GATC	1 cut(s)	737
EaeI	YGGCCR	1 cut(s)	649
Eco130I	CCWWGG	5 cut(s)	370, 414, 502, 556, 799
Eco147I	AGGCCT	1 cut(s)	933
Eco47I	GGWCC	1 cut(s)	367
Eco47III	AGCGCT	1 cut(s)	128
EcoO109I	RGGNCCY	1 cut(s)	9
EcoRII	CCWGG	1 cut(s)	11
EcoT14I	CCWWGG	5 cut(s)	370, 414, 502, 556, 799
EcoT22I	ATGCAT	1 cut(s)	52
ErhI	CCWWGG	5 cut(s)	370, 414, 502, 556, 799
FaeI	CATG	9 cut(s)	272, 418, 526, 560, 609, 635, 783, 803, 870
FaqI	GGGAC	1 cut(s)	853
FatI	CATG	9 cut(s)	268, 414, 522, 556, 605, 631, 779, 799, 866
FblI	GTMKAC	1 cut(s)	99
Fnu4HI	GCNGC	3 cut(s)	37, 411, 636
FokI	GGATG	2 cut(s)	91, 539
Fsp4HI	GCNGC	3 cut(s)	37, 411, 636
FspBI	CTAG	1 cut(s)	794
GlaI	GCGC	2 cut(s)	128, 682
GluI	GCNGC	3 cut(s)	37, 411, 636
GsuI	CTGGAG	1 cut(s)	355
HaeII	RGCGCY	2 cut(s)	130, 684
HaeIII	GGCC	6 cut(s)	11, 375, 519, 575, 651, 933
HapII	CCGG	1 cut(s)	926
HgaI	GACGC	2 cut(s)	102, 737
HhaI	GCGC	2 cut(s)	129, 683
Hin1I	GRCGYC	1 cut(s)	729
Hin1II	CATG	9 cut(s)	272, 418, 526, 560, 609, 635, 783, 803, 870
Hin6I	GCGC	2 cut(s)	127, 681
HinP1I	GCGC	2 cut(s)	127, 681
HincII	GTYRAC	1 cut(s)	478
HindII	GTYRAC	1 cut(s)	478
HinfI	GANTC	2 cut(s)	82, 164
HpaII	CCGG	1 cut(s)	926
HphI	GGTGA	2 cut(s)	506, 868
Hpy166II	GTNNAC	4 cut(s)	100, 240, 446, 478
Hpy188I	TCNGA	3 cut(s)	22, 463, 742
Hpy188III	TCNNGA	3 cut(s)	133, 249, 269
Hpy8I	GTNNAC	4 cut(s)	100, 240, 446, 478
HpyAV	CCTTC	4 cut(s)	112, 413, 613, 923
HpyCH4III	ACNGT	4 cut(s)	316, 482, 674, 811
HpyF10VI	GCNNNNNNNGC	6 cut(s)	401, 410, 632, 728, 789, 953
HpyF3I	CTNAG	5 cut(s)	200, 400, 563, 615, 843
Hsp92I	GRCGYC	1 cut(s)	729
Hsp92II	CATG	9 cut(s)	272, 418, 526, 560, 609, 635, 783, 803, 870
HspAI	GCGC	2 cut(s)	127, 681
Kzo9I	GATC	1 cut(s)	737
LmnI	GCTCC	1 cut(s)	347
Lsp1109I	GCAGC	3 cut(s)	48, 422, 647
LweI	GCATC	3 cut(s)	37, 520, 910
MaeI	CTAG	1 cut(s)	794
MaeIII	GTNAC	3 cut(s)	86, 352, 805
MalI	GATC	1 cut(s)	739
MboI	GATC	1 cut(s)	737
MboII	GAAGA	5 cut(s)	9, 159, 509, 668, 871
MflI	RGATCY	1 cut(s)	737
MlsI	TGGCCA	1 cut(s)	651
MluCI	AATT	3 cut(s)	423, 577, 749
MluI	ACGCGT	1 cut(s)	94
MluNI	TGGCCA	1 cut(s)	651
MlyI	GAGTC	1 cut(s)	76
MnlI	CCTC	7 cut(s)	256, 505, 530, 565, 649, 944, 967
Mox20I	TGGCCA	1 cut(s)	651
Mph1103I	ATGCAT	1 cut(s)	52
MroXI	GAANNNNTTC	1 cut(s)	128
MscI	TGGCCA	1 cut(s)	651
MseI	TTAA	4 cut(s)	53, 261, 489, 690
MslI	CAYNNNNRTG	2 cut(s)	657, 902
Msp20I	TGGCCA	1 cut(s)	651
MspA1I	CMGCKG	1 cut(s)	735
MspI	CCGG	1 cut(s)	926
MspR9I	CCNGG	1 cut(s)	13
Mva1269I	GAATGC	1 cut(s)	909
MvaI	CCWGG	1 cut(s)	13
MvnI	CGCG	1 cut(s)	96
MwoI	GCNNNNNNNGC	6 cut(s)	401, 410, 632, 728, 789, 953
NcoI	CCATGG	3 cut(s)	414, 556, 799
NdeII	GATC	1 cut(s)	737
NlaIII	CATG	9 cut(s)	272, 418, 526, 560, 609, 635, 783, 803, 870
NlaIV	GGNNCC	1 cut(s)	10
NsiI	ATGCAT	1 cut(s)	52
NspI	RCATGY	2 cut(s)	609, 783
PagI	TCATGA	1 cut(s)	268
PceI	AGGCCT	1 cut(s)	933
PctI	GAATGC	1 cut(s)	909
PdmI	GAANNNNTTC	1 cut(s)	128
PfeI	GAWTC	1 cut(s)	164
PkrI	GCNGC	3 cut(s)	38, 412, 637
PleI	GAGTC	1 cut(s)	76
PpsI	GAGTC	1 cut(s)	76
PshBI	ATTAAT	1 cut(s)	53
Psp6I	CCWGG	1 cut(s)	11
PspGI	CCWGG	1 cut(s)	11
PspN4I	GGNNCC	1 cut(s)	10
PspPI	GGNCC	2 cut(s)	9, 367
PsuI	RGATCY	1 cut(s)	737
RsaI	GTAC	3 cut(s)	568, 604, 896
RsaNI	GTAC	3 cut(s)	567, 603, 895
RseI	CAYNNNNRTG	2 cut(s)	657, 902
SaqAI	TTAA	4 cut(s)	53, 261, 489, 690
SatI	GCNGC	3 cut(s)	37, 411, 636
Sau3AI	GATC	1 cut(s)	737
Sau96I	GGNCC	2 cut(s)	9, 367
SchI	GAGTC	1 cut(s)	76
ScrFI	CCNGG	1 cut(s)	13
SetI	ASST	6 cut(s)	193, 225, 352, 474, 595, 712
SfaNI	GCATC	3 cut(s)	37, 520, 910
SinI	GGWCC	1 cut(s)	367
SmiMI	CAYNNNNRTG	2 cut(s)	657, 902
SmlI	CTYRAG	1 cut(s)	247
SmoI	CTYRAG	1 cut(s)	247
Sse9I	AATT	3 cut(s)	423, 577, 749
SseBI	AGGCCT	1 cut(s)	933
SsiI	CCGC	2 cut(s)	735, 783
SspMI	CTAG	1 cut(s)	794
StuI	AGGCCT	1 cut(s)	933
StyD4I	CCNGG	1 cut(s)	11
StyI	CCWWGG	5 cut(s)	370, 414, 502, 556, 799
TaaI	ACNGT	4 cut(s)	316, 482, 674, 811
TaqI	TCGA	2 cut(s)	256, 641
TasI	AATT	3 cut(s)	423, 577, 749
TfiI	GAWTC	1 cut(s)	164
Tru1I	TTAA	4 cut(s)	53, 261, 489, 690
Tru9I	TTAA	4 cut(s)	53, 261, 489, 690
TscAI	CASTG	6 cut(s)	109, 115, 319, 411, 679, 973
TseI	GCWGC	3 cut(s)	36, 410, 635
TspDTI	ATGAA	3 cut(s)	285, 318, 532
TspGWI	ACGGA	1 cut(s)	105
TspRI	CASTG	6 cut(s)	109, 115, 319, 411, 679, 973
VpaK11BI	GGWCC	1 cut(s)	367
VspI	ATTAAT	1 cut(s)	53
XceI	RCATGY	2 cut(s)	609, 783
XcmI	CCANNNNNNNNNTGG	1 cut(s)	377
XmiI	GTMKAC	1 cut(s)	99
XmnI	GAANNNNTTC	1 cut(s)	128
XspI	CTAG	1 cut(s)	794
Zsp2I	ATGCAT	1 cut(s)	52

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.