Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0003116

Physical Location & Seq

Genomic Coordinates Forward (+)

56605133 .. 56608432

Gene Structure 3300 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG379600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 915 bp

ATGGGAGACCAAAGTCCATCTGGGTCTAAGTTGAGTGTGTTTCTCAAGAAGATCAAACCTTATTTGGCTATGGTCTCCCTGCAGTTTGGGTATGCAGGCATGTACATCATAAGCATGGTCTCGTTTAAGCATGGCATGAGTCACTTTGTCTTGTCGGTGTACCGTCACGTTGTTGCCTTCTGTGTCATTGCACCCTTCGCGTTGGTTCTTGAAAGGAAAATAAGGCCAAGAATGACTCTCCCCATATTCCTCAGAATAGTGTTGCTTGGATTTCTTGAGCCAGTTCTTGACCAGAACTTATACTTTCTGGGAATGAAGTACACCTCAGCAACATTTGCATCTGCAACTGTTAATGTCCTTCCTGCCATAACCTTTATACTGGCACTTTGCTTCAGGTTAGAGACTGTGAACGTCAAGAAGCTACATAGCCTAGCCAAGGTCATCGGAACGTTGGTCACCTTGTCTGGAGCAATGATCATGACTTTGTACAAAGGCCCCATTATCGATGTTGTACGGGGACACTCAAACAGCACCCAAAGTAGTAGCACCGAGTCAAGCGATCAGCATTGGATCGCTGGCCCCTTGATGCTCATAGCCAGCTGCGGCGGTTGGGCAAGTTTCTTTATCCTACAATCGTTCACATTGAAGAAGTACCCAGCACAGTTGTCTCTCACAGCCTGGATTTGTGTAATGGGTGTGCTGGAAGGTGGAGTAGTGACACTTGTGATGGAACGCAAAATGAGTGTTTGGGTTATAGGTTGGGACTCAAGACTTCTTGCTTCTGTTTACTCTGTGAGTACTCGATCAATTCCAACCTTTTCTTTTTTTTTGATTTGTCAATCACACGGTGTCCTCAAAAGCTTCCTAGGCCCAGAGACTAATTCGTGCTCGAGGGATCTATTCCAACCATTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003333 GO:0003674 GO:0005215 GO:0005342 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0005887 GO:0005938 GO:0006810 GO:0006811 GO:0006820 GO:0006865 GO:0007154 GO:0007165 GO:0008150 GO:0008509 GO:0008514 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009755 GO:0009987 GO:0010033 GO:0015075 GO:0015171 GO:0015179 GO:0015318 GO:0015562 GO:0015711 GO:0015807 GO:0015849 GO:0016020 GO:0016021 GO:0022857 GO:0023052 GO:0031224 GO:0031226 GO:0032870 GO:0032973 GO:0034220 GO:0034639 GO:0042221 GO:0042592 GO:0043090 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0046942 GO:0046943 GO:0048878 GO:0050789 GO:0050794 GO:0050801 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0055081 GO:0055085 GO:0065007 GO:0065008 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0071702 GO:0071705 GO:0071944 GO:0080144 GO:0098656 GO:0099568 GO:0140115 GO:1902475 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EamA

Protein Analysis

304

Amino Acids

33.64

Weight (kDa)

9.62

Isoelectric Point (pI)

36.4

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EamA	PF00892	22 - 152	7.7e-12	EamA-like transporter family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003116)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G21890 AT1G21890 AT1G44800 AT4G08300
fragaria_vesca	FvH4_2g26691 FvH4_2g26691 FvH4_2g26691 FvH4_2g26700
malus_domestica	MD00G1157200.v1.1 MD15G1351700.v1.1 MD15G1351800.v1.1
prunus_persica	Prupe.1G500400_v2.0.a1 Prupe.1G500400_v2.0.a1 Prupe.1G500500_v2.0.a1
pyrus_communis	pycom08g14190 pycom15g31510
rosa_chinensis	RchiOBHm_Chr6g0295541 RchiOBHm_Chr6g0295571
rosa_laevigata	RLG00000011789 RLG00000011792
rosa_multiflora	Rmu_sc0005000.1_g000009 Rmu_sc0005000.1_g000012
rosa_roxburghii	Rroxscaffold_7G00172360 Rroxscaffold_7G00172380
rosa_rugosa	Rorug06G0251800 Rorug06G0251900 Rorug06G0252000 Rorug06G0252100
rosa_samantha	Rh6AG365000 Rh6AG365200 Rh6BG373400 Rh6CG379600 Rh6CG379800 Rh6DG366100 Rh6DG366400
rosa_wichuraiana	Rw6G031880 Rw6G031890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	200
AciI	CCGC	2 cut(s)	603, 606
AclI	AACGTT	1 cut(s)	449
AclWI	GGATC	2 cut(s)	578, 903
AcuI	CTGAAG	1 cut(s)	376
AdeI	CACNNNGTG	1 cut(s)	848
AfaI	GTAC	7 cut(s)	104, 161, 320, 488, 513, 653, 799
AfiI	CCNNNNNNNGG	1 cut(s)	436
AgsI	TTSAA	2 cut(s)	212, 646
AjnI	CCWGG	1 cut(s)	677
AluBI	AGCT	3 cut(s)	421, 600, 861
AluI	AGCT	3 cut(s)	421, 600, 861
Alw21I	GWGCWC	1 cut(s)	890
Alw26I	GTCTC	5 cut(s)	79, 124, 395, 672, 869
AlwI	GGATC	2 cut(s)	578, 903
Ama87I	CYCGRG	1 cut(s)	889
AoxI	GGCC	4 cut(s)	224, 493, 577, 868
ApeKI	GCWGC	1 cut(s)	600
AspA2I	CCTAGG	1 cut(s)	865
AspS9I	GGNCC	3 cut(s)	494, 578, 869
AsuHPI	GGTGA	1 cut(s)	448
AvaI	CYCGRG	1 cut(s)	889
AvrII	CCTAGG	1 cut(s)	865
Bbv12I	GWGCWC	1 cut(s)	890
BbvCI	CCTCAGC	1 cut(s)	325
BbvI	GCAGC	1 cut(s)	587
BccI	CCATC	2 cut(s)	25, 721
BciT130I	CCWGG	1 cut(s)	679
BclI	TGATCA	1 cut(s)	474
BcoDI	GTCTC	5 cut(s)	79, 124, 395, 672, 869
BfaI	CTAG	2 cut(s)	431, 866
BfmI	CTRYAG	1 cut(s)	80
BisI	GCNGC	2 cut(s)	601, 604
BlnI	CCTAGG	1 cut(s)	865
BlsI	GCNGC	2 cut(s)	602, 605
BmcAI	AGTACT	1 cut(s)	799
Bme1390I	CCNGG	1 cut(s)	679
BmeT110I	CYCGRG	1 cut(s)	889
BmgT120I	GGNCC	3 cut(s)	494, 578, 869
BmiI	GGNNCC	2 cut(s)	496, 580
BmrFI	CCNGG	1 cut(s)	679
BmsI	GCATC	2 cut(s)	347, 576
BoxI	GACNNNNGTC	1 cut(s)	12
BpmI	CTGGAG	1 cut(s)	486
Bpu10I	CCTNAGC	1 cut(s)	325
BpuEI	CTTGAG	3 cut(s)	29, 296, 751
Bsa29I	ATCGAT	1 cut(s)	504
BsaI	GGTCTC	2 cut(s)	79, 124
BsaJI	CCNNGG	2 cut(s)	435, 865
Bsc4I	CCNNNNNNNGG	1 cut(s)	436
Bse1I	ACTGG	2 cut(s)	281, 384
Bse3DI	GCAATG	2 cut(s)	186, 477
BseBI	CCWGG	1 cut(s)	679
BseCI	ATCGAT	1 cut(s)	504
BseDI	CCNNGG	2 cut(s)	435, 865
BseLI	CCNNNNNNNGG	1 cut(s)	436
BseMI	GCAATG	2 cut(s)	186, 477
BseMII	CTCAG	2 cut(s)	265, 339
BseNI	ACTGG	2 cut(s)	281, 384
BseXI	GCAGC	1 cut(s)	587
BseYI	CCCAGC	1 cut(s)	655
Bsh1236I	CGCG	1 cut(s)	200
BshFI	GGCC	4 cut(s)	226, 495, 579, 870
BshVI	ATCGAT	1 cut(s)	504
BsiHKAI	GWGCWC	1 cut(s)	890
BsiHKCI	CYCGRG	1 cut(s)	889
BslFI	GGGAC	2 cut(s)	531, 776
BslI	CCNNNNNNNGG	1 cut(s)	436
BsmAI	GTCTC	5 cut(s)	79, 124, 395, 672, 869
BsmFI	GGGAC	2 cut(s)	531, 776
BsnI	GGCC	4 cut(s)	226, 495, 579, 870
Bso31I	GGTCTC	2 cut(s)	79, 124
BsoBI	CYCGRG	1 cut(s)	889
Bsp1286I	GDGCHC	1 cut(s)	890
Bsp1407I	TGTACA	2 cut(s)	102, 486
Bsp143I	GATC	6 cut(s)	51, 474, 559, 570, 803, 895
BspACI	CCGC	2 cut(s)	603, 606
BspANI	GGCC	4 cut(s)	226, 495, 579, 870
BspCNI	CTCAG	2 cut(s)	264, 338
BspDI	ATCGAT	1 cut(s)	504
BspFNI	CGCG	1 cut(s)	200
BspHI	TCATGA	1 cut(s)	477
BspLI	GGNNCC	2 cut(s)	496, 580
BspMAI	CTGCAG	1 cut(s)	84
BspPI	GGATC	2 cut(s)	578, 903
BspTNI	GGTCTC	2 cut(s)	79, 124
BsrDI	GCAATG	2 cut(s)	186, 477
BsrGI	TGTACA	2 cut(s)	102, 486
BsrI	ACTGG	2 cut(s)	281, 384
BssECI	CCNNGG	2 cut(s)	435, 865
BssMI	GATC	6 cut(s)	51, 474, 559, 570, 803, 895
BssT1I	CCWWGG	2 cut(s)	435, 865
Bst2UI	CCWGG	1 cut(s)	679
Bst4CI	ACNGT	5 cut(s)	164, 349, 406, 663, 848
BstAPI	GCANNNNNTGC	1 cut(s)	335
BstAUI	TGTACA	2 cut(s)	102, 486
BstC8I	GCNNGC	3 cut(s)	97, 577, 598
BstDEI	CTNAG	3 cut(s)	27, 251, 325
BstEII	GGTNACC	1 cut(s)	454
BstENI	CCTNNNNNAGG	1 cut(s)	434
BstFNI	CGCG	1 cut(s)	200
BstKTI	GATC	6 cut(s)	54, 477, 562, 573, 806, 898
BstMAI	GTCTC	5 cut(s)	79, 124, 395, 672, 869
BstMBI	GATC	6 cut(s)	51, 474, 559, 570, 803, 895
BstMWI	GCNNNNNNNGC	3 cut(s)	197, 335, 867
BstNI	CCWGG	1 cut(s)	679
BstNSI	RCATGY	1 cut(s)	103
BstPAI	GACNNNNGTC	1 cut(s)	12
BstPI	GGTNACC	1 cut(s)	454
BstSCI	CCNGG	1 cut(s)	677
BstSFI	CTRYAG	1 cut(s)	80
BstUI	CGCG	1 cut(s)	200
BstV1I	GCAGC	1 cut(s)	587
BstX2I	RGATCY	1 cut(s)	895
BstYI	RGATCY	1 cut(s)	895
Bsu15I	ATCGAT	1 cut(s)	504
BsuRI	GGCC	4 cut(s)	226, 495, 579, 870
BsuTUI	ATCGAT	1 cut(s)	504
Cac8I	GCNNGC	3 cut(s)	97, 577, 598
CciI	TCATGA	1 cut(s)	477
Cfr13I	GGNCC	3 cut(s)	494, 578, 869
ClaI	ATCGAT	1 cut(s)	504
Csp6I	GTAC	7 cut(s)	103, 160, 319, 487, 512, 652, 798
CviAII	CATG	5 cut(s)	100, 115, 131, 136, 478
CviQI	GTAC	7 cut(s)	103, 160, 319, 487, 512, 652, 798
DdeI	CTNAG	3 cut(s)	27, 251, 325
DpnI	GATC	6 cut(s)	53, 476, 561, 572, 805, 897
DpnII	GATC	6 cut(s)	51, 474, 559, 570, 803, 895
DraIII	CACNNNGTG	1 cut(s)	848
Eco130I	CCWWGG	2 cut(s)	435, 865
Eco31I	GGTCTC	2 cut(s)	79, 124
Eco57I	CTGAAG	1 cut(s)	376
Eco88I	CYCGRG	1 cut(s)	889
Eco91I	GGTNACC	1 cut(s)	454
EcoNI	CCTNNNNNAGG	1 cut(s)	434
EcoO109I	RGGNCCY	1 cut(s)	494
EcoO65I	GGTNACC	1 cut(s)	454
EcoRII	CCWGG	1 cut(s)	677
EcoT14I	CCWWGG	2 cut(s)	435, 865
ErhI	CCWWGG	2 cut(s)	435, 865
FaeI	CATG	5 cut(s)	103, 118, 134, 139, 481
FaqI	GGGAC	2 cut(s)	531, 776
FatI	CATG	5 cut(s)	99, 114, 130, 135, 477
FbaI	TGATCA	1 cut(s)	474
Fnu4HI	GCNGC	2 cut(s)	601, 604
Fsp4HI	GCNGC	2 cut(s)	601, 604
FspBI	CTAG	2 cut(s)	431, 866
GluI	GCNGC	2 cut(s)	601, 604
GsaI	CCCAGC	1 cut(s)	659
GsuI	CTGGAG	1 cut(s)	486
HaeIII	GGCC	4 cut(s)	226, 495, 579, 870
Hin1II	CATG	5 cut(s)	103, 118, 134, 139, 481
HindIII	AAGCTT	1 cut(s)	859
HinfI	GANTC	4 cut(s)	139, 235, 551, 764
HphI	GGTGA	1 cut(s)	448
Hpy166II	GTNNAC	5 cut(s)	160, 321, 409, 639, 787
Hpy188I	TCNGA	2 cut(s)	254, 446
Hpy188III	TCNNGA	8 cut(s)	46, 209, 275, 287, 415, 465, 478, 768
Hpy8I	GTNNAC	5 cut(s)	160, 321, 409, 639, 787
HpyAV	CCTTC	4 cut(s)	187, 205, 368, 698
HpyCH4III	ACNGT	5 cut(s)	164, 349, 406, 663, 848
HpyCH4IV	ACGT	3 cut(s)	168, 411, 449
HpyCH4V	TGCA	5 cut(s)	82, 95, 191, 338, 344
HpyF10VI	GCNNNNNNNGC	3 cut(s)	197, 335, 867
HpyF3I	CTNAG	3 cut(s)	27, 251, 325
HpySE526I	ACGT	3 cut(s)	168, 411, 449
Hsp92II	CATG	5 cut(s)	103, 118, 134, 139, 481
Ksp22I	TGATCA	1 cut(s)	474
Kzo9I	GATC	6 cut(s)	51, 474, 559, 570, 803, 895
LmnI	GCTCC	1 cut(s)	467
Lsp1109I	GCAGC	1 cut(s)	587
LweI	GCATC	2 cut(s)	347, 576
MaeI	CTAG	2 cut(s)	431, 866
MaeII	ACGT	3 cut(s)	168, 411, 449
MaeIII	GTNAC	4 cut(s)	140, 164, 454, 715
MalI	GATC	6 cut(s)	53, 476, 561, 572, 805, 897
MboI	GATC	6 cut(s)	51, 474, 559, 570, 803, 895
MboII	GAAGA	2 cut(s)	61, 658
MflI	RGATCY	1 cut(s)	895
MhlI	GDGCHC	1 cut(s)	890
MluCI	AATT	2 cut(s)	807, 880
MlyI	GAGTC	4 cut(s)	148, 229, 560, 758
MmeI	TCCRAC	1 cut(s)	836
MnlI	CCTC	4 cut(s)	260, 334, 863, 885
MseI	TTAA	3 cut(s)	126, 351, 913
MslI	CAYNNNNRTG	1 cut(s)	113
MspA1I	CMGCKG	1 cut(s)	600
MspR9I	CCNGG	1 cut(s)	679
MvaI	CCWGG	1 cut(s)	679
MvnI	CGCG	1 cut(s)	200
MwoI	GCNNNNNNNGC	3 cut(s)	197, 335, 867
NdeII	GATC	6 cut(s)	51, 474, 559, 570, 803, 895
NlaIII	CATG	5 cut(s)	103, 118, 134, 139, 481
NlaIV	GGNNCC	2 cut(s)	496, 580
NmuCI	GTSAC	4 cut(s)	140, 164, 454, 715
NspI	RCATGY	1 cut(s)	103
PaeR7I	CTCGAG	1 cut(s)	889
PagI	TCATGA	1 cut(s)	477
PkrI	GCNGC	2 cut(s)	602, 605
PleI	GAGTC	4 cut(s)	147, 229, 559, 758
PpsI	GAGTC	4 cut(s)	147, 229, 559, 758
PshAI	GACNNNNGTC	1 cut(s)	12
Psp1406I	AACGTT	1 cut(s)	449
Psp6I	CCWGG	1 cut(s)	677
PspEI	GGTNACC	1 cut(s)	454
PspFI	CCCAGC	1 cut(s)	655
PspGI	CCWGG	1 cut(s)	677
PspN4I	GGNNCC	2 cut(s)	496, 580
PspPI	GGNCC	3 cut(s)	494, 578, 869
PspXI	VCTCGAGB	1 cut(s)	889
PstI	CTGCAG	1 cut(s)	84
PsuI	RGATCY	1 cut(s)	895
PvuII	CAGCTG	1 cut(s)	600
RsaI	GTAC	7 cut(s)	104, 161, 320, 488, 513, 653, 799
RsaNI	GTAC	7 cut(s)	103, 160, 319, 487, 512, 652, 798
RseI	CAYNNNNRTG	1 cut(s)	113
SaqAI	TTAA	3 cut(s)	126, 351, 913
SatI	GCNGC	2 cut(s)	601, 604
Sau3AI	GATC	6 cut(s)	51, 474, 559, 570, 803, 895
Sau96I	GGNCC	3 cut(s)	494, 578, 869
ScaI	AGTACT	1 cut(s)	799
SchI	GAGTC	4 cut(s)	148, 229, 560, 758
ScrFI	CCNGG	1 cut(s)	679
SduI	GDGCHC	1 cut(s)	890
SfaNI	GCATC	2 cut(s)	347, 576
SfcI	CTRYAG	1 cut(s)	80
Sfr274I	CTCGAG	1 cut(s)	889
SlaI	CTCGAG	1 cut(s)	889
SmiMI	CAYNNNNRTG	1 cut(s)	113
SmlI	CTYRAG	4 cut(s)	44, 275, 766, 889
SmoI	CTYRAG	4 cut(s)	44, 275, 766, 889
Sse9I	AATT	2 cut(s)	807, 880
SsiI	CCGC	2 cut(s)	603, 606
SspMI	CTAG	2 cut(s)	431, 866
StyD4I	CCNGG	1 cut(s)	677
StyI	CCWWGG	2 cut(s)	435, 865
TaaI	ACNGT	5 cut(s)	164, 349, 406, 663, 848
TaiI	ACGT	3 cut(s)	171, 414, 452
TaqI	TCGA	3 cut(s)	504, 802, 890
TasI	AATT	2 cut(s)	807, 880
TatI	WGTACW	4 cut(s)	102, 318, 486, 797
TauI	GCSGC	1 cut(s)	606
Tru1I	TTAA	3 cut(s)	126, 351, 913
Tru9I	TTAA	3 cut(s)	126, 351, 913
TseFI	GTSAC	4 cut(s)	140, 164, 454, 715
TseI	GCWGC	1 cut(s)	600
Tsp45I	GTSAC	4 cut(s)	140, 164, 454, 715
TspDTI	ATGAA	1 cut(s)	329
XagI	CCTNNNNNAGG	1 cut(s)	434
XceI	RCATGY	1 cut(s)	103
XcmI	CCANNNNNNNNNTGG	1 cut(s)	17
XhoI	CTCGAG	1 cut(s)	889
XmaJI	CCTAGG	1 cut(s)	865
XspI	CTAG	2 cut(s)	431, 866
ZrmI	AGTACT	1 cut(s)	799

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.