Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0003116

Physical Location & Seq

Genomic Coordinates Reverse (-)

41913266 .. 41918672

Gene Structure 5407 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1351800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1092 bp

ATGGGAGAGTCGAAGTTGAGTTTATTTCTCATCAAGATCAAGCCTTACTTGGCTATGGTCTCTCTTCAGTTTGGATATTCAGGCATGTATATCATTAGCATGGTCTCTTTTAAGCATGGCATGAGTCACTTCGTTCTCTCGGTTTATCGTCACGTTGTTGCCTTCTGTGTCATCGCACCCTTCGCCTTTGTTCTTGAAAGGAAAGTAAGGCCGAGAATGACACTCCCGATATTCCTCCGAATAGTTCTGCTTGGTTTTCTTGAGCCGGTTCTTGATCAAAACTTGTACTTTTTGGGAATGAAGTACACGTCAGCGACATTTGCATCTGCTGTTGTCAATGTCCTTCCGGCCATTACCTTCATAATGGCACTTTGTTTCAGGCTAGAGACTGTCAACGTTAAGAAGCTACATAGCCTGGCGAAGGTAATTGGAACAGTGATCACAGTGGGAGGAGCAATGATCATGACATTATACAAAGGCCCCATTGTGGATATCATACGAGGACACTCACACAGTCACAACAGCAGCACCACCGAATCCAGCGAACAGCATTGGATCGCTGGCCCCTTAATGCTCTTAGGCAGCTGCGGTGGTTGGGCAAGTTTCTTCATTCTTCAATCCTTTACGTTGAAGAAGTACCCGGCAGAGCTCTCTCTCACAGCTTGGATATGCTTGATGGGTATGTTGGAAGGTGGAGTAATAACATTTGCAGTGGAACGCAAATTGAGTGTCTGGGTTATAGGCTGGGACTCAAGGCTCCTTGCTTCCGTTTATTCTGGAGTGGTTTGTTCTGGGATGGCATATTATGTGCAAGGAGTTGTCATTAGGGAACGAGGCCCCGTTTTTGTGACCGCTTTCAGCCCCCTCTGCATGATCATCACCGCCGCTCTAGGGGCTATCGTTTTAGCTGAGCAAGTCCACCTCGGAAGTGTAATTGGAGCCATTTGCATAGTGTTCGGCCTCTACACTGTGGTCTGGGGCAAAAGCAAGGACCCTCTAGCATCAAGCGCGCCGTTGAAAGATGAGAAAACTCGTAACCTTGAGTTGCCAGTGAGTGCCGATCATCACAATAGCATAAATGATCGTACCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003333 GO:0003674 GO:0005215 GO:0005342 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0005887 GO:0005938 GO:0006810 GO:0006811 GO:0006820 GO:0006865 GO:0007154 GO:0007165 GO:0008150 GO:0008509 GO:0008514 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009755 GO:0009987 GO:0010033 GO:0015075 GO:0015171 GO:0015179 GO:0015318 GO:0015562 GO:0015711 GO:0015807 GO:0015849 GO:0016020 GO:0016021 GO:0022857 GO:0023052 GO:0031224 GO:0031226 GO:0032870 GO:0032973 GO:0034220 GO:0034639 GO:0042221 GO:0042592 GO:0043090 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0046942 GO:0046943 GO:0048878 GO:0050789 GO:0050794 GO:0050801 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0055081 GO:0055085 GO:0065007 GO:0065008 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0071702 GO:0071705 GO:0071944 GO:0080144 GO:0098656 GO:0099568 GO:0140115 GO:1902475 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EamA

Protein Analysis

364

Amino Acids

39.85

Weight (kDa)

9.26

Isoelectric Point (pI)

26.89

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EamA	PF00892	27 - 154	5.6e-12	EamA-like transporter family
EamA	PF00892	188 - 325	9.5e-10	EamA-like transporter family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003116)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G21890 AT1G21890 AT1G44800 AT4G08300
fragaria_vesca	FvH4_2g26691 FvH4_2g26691 FvH4_2g26691 FvH4_2g26700
malus_domestica	MD00G1157200.v1.1 MD15G1351700.v1.1 MD15G1351800.v1.1
prunus_persica	Prupe.1G500400_v2.0.a1 Prupe.1G500400_v2.0.a1 Prupe.1G500500_v2.0.a1
pyrus_communis	pycom08g14190 pycom15g31510
rosa_chinensis	RchiOBHm_Chr6g0295541 RchiOBHm_Chr6g0295571
rosa_laevigata	RLG00000011789 RLG00000011792
rosa_multiflora	Rmu_sc0005000.1_g000009 Rmu_sc0005000.1_g000012
rosa_roxburghii	Rroxscaffold_7G00172360 Rroxscaffold_7G00172380
rosa_rugosa	Rorug06G0251800 Rorug06G0251900 Rorug06G0252000 Rorug06G0252100
rosa_samantha	Rh6AG365000 Rh6AG365200 Rh6BG373400 Rh6CG379600 Rh6CG379800 Rh6DG366100 Rh6DG366400
rosa_wichuraiana	Rw6G031880 Rw6G031890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	887
AccII	CGCG	1 cut(s)	1010
AciI	CCGC	4 cut(s)	588, 852, 882, 885
AclI	AACGTT	1 cut(s)	396
AclWI	GGATC	1 cut(s)	563
AcoI	YGGCCR	1 cut(s)	348
AcuI	CTGAAG	1 cut(s)	50
AfaI	GTAC	4 cut(s)	287, 305, 638, 1087
AfiI	CCNNNNNNNGG	3 cut(s)	421, 487, 891
AflIII	ACRYGT	1 cut(s)	306
AgsI	TTSAA	4 cut(s)	197, 617, 631, 1018
AjiI	CACGTC	1 cut(s)	309
AjnI	CCWGG	1 cut(s)	414
AluBI	AGCT	5 cut(s)	406, 585, 649, 662, 908
AluI	AGCT	5 cut(s)	406, 585, 649, 662, 908
Alw21I	GWGCWC	1 cut(s)	651
Alw26I	GTCTC	3 cut(s)	64, 109, 380
AlwI	GGATC	1 cut(s)	563
AoxI	GGCC	6 cut(s)	209, 348, 478, 562, 835, 958
ApeKI	GCWGC	3 cut(s)	525, 582, 585
ArsI	GACNNNNNNTTYG	2 cut(s)	714, 746
AspLEI	GCGC	2 cut(s)	1010, 1012
AspS9I	GGNCC	4 cut(s)	479, 563, 836, 991
AsuC2I	CCSGG	1 cut(s)	641
AsuHPI	GGTGA	1 cut(s)	871
AvaII	GGWCC	1 cut(s)	991
BanII	GRGCYC	1 cut(s)	651
Bbv12I	GWGCWC	1 cut(s)	651
BbvI	GCAGC	3 cut(s)	537, 572, 594
BccI	CCATC	2 cut(s)	670, 790
BceAI	ACGGC	1 cut(s)	997
BcgI	CGANNNNNNTGC	2 cut(s)	937, 971
BciT130I	CCWGG	1 cut(s)	416
BclI	TGATCA	4 cut(s)	274, 438, 459, 873
BcnI	CCSGG	1 cut(s)	641
BcoDI	GTCTC	3 cut(s)	64, 109, 380
BfaI	CTAG	3 cut(s)	383, 890, 998
BisI	GCNGC	4 cut(s)	526, 583, 586, 885
BlpI	GCTNAGC	1 cut(s)	909
BlsI	GCNGC	4 cut(s)	527, 584, 587, 886
Bme1390I	CCNGG	2 cut(s)	416, 641
Bme18I	GGWCC	1 cut(s)	991
BmgBI	CACGTC	1 cut(s)	309
BmgT120I	GGNCC	4 cut(s)	479, 563, 836, 991
BmiI	GGNNCC	6 cut(s)	481, 565, 758, 838, 940, 993
BmrFI	CCNGG	2 cut(s)	416, 641
BmsI	GCATC	2 cut(s)	332, 1010
BpmI	CTGGAG	1 cut(s)	798
Bpu1102I	GCTNAGC	1 cut(s)	909
BpuEI	CTTGAG	3 cut(s)	281, 736, 1061
BpuMI	CCSGG	1 cut(s)	641
BsaI	GGTCTC	2 cut(s)	64, 109
BsaJI	CCNNGG	1 cut(s)	922
Bsc4I	CCNNNNNNNGG	3 cut(s)	421, 487, 891
Bse118I	RCCGGY	1 cut(s)	265
Bse1I	ACTGG	1 cut(s)	1049
Bse3DI	GCAATG	1 cut(s)	462
BseBI	CCWGG	1 cut(s)	416
BseDI	CCNNGG	1 cut(s)	922
BseGI	GGATG	1 cut(s)	801
BseLI	CCNNNNNNNGG	3 cut(s)	421, 487, 891
BseMI	GCAATG	1 cut(s)	462
BseMII	CTCAG	1 cut(s)	900
BseNI	ACTGG	1 cut(s)	1049
BsePI	GCGCGC	1 cut(s)	1008
BseRI	GAGGAG	1 cut(s)	465
BseXI	GCAGC	3 cut(s)	537, 572, 594
BseYI	CCCAGC	1 cut(s)	744
Bsh1236I	CGCG	1 cut(s)	1010
BshFI	GGCC	6 cut(s)	211, 350, 480, 564, 837, 960
BsiHKAI	GWGCWC	1 cut(s)	651
BsiSI	CCGG	3 cut(s)	266, 347, 641
BslFI	GGGAC	1 cut(s)	761
BslI	CCNNNNNNNGG	3 cut(s)	421, 487, 891
BsmAI	GTCTC	3 cut(s)	64, 109, 380
BsmFI	GGGAC	1 cut(s)	761
BsnI	GGCC	6 cut(s)	211, 350, 480, 564, 837, 960
Bso31I	GGTCTC	2 cut(s)	64, 109
Bsp1286I	GDGCHC	1 cut(s)	651
Bsp143I	GATC	8 cut(s)	36, 274, 438, 459, 555, 873, 1060, 1081
Bsp1720I	GCTNAGC	1 cut(s)	909
BspACI	CCGC	4 cut(s)	588, 852, 882, 885
BspANI	GGCC	6 cut(s)	211, 350, 480, 564, 837, 960
BspCNI	CTCAG	1 cut(s)	901
BspFNI	CGCG	1 cut(s)	1010
BspHI	TCATGA	1 cut(s)	462
BspLI	GGNNCC	6 cut(s)	481, 565, 758, 838, 940, 993
BspPI	GGATC	1 cut(s)	563
BspTNI	GGTCTC	2 cut(s)	64, 109
BsrBI	CCGCTC	1 cut(s)	887
BsrDI	GCAATG	1 cut(s)	462
BsrFI	RCCGGY	1 cut(s)	265
BsrI	ACTGG	1 cut(s)	1049
BssAI	RCCGGY	1 cut(s)	265
BssECI	CCNNGG	1 cut(s)	922
BssHII	GCGCGC	1 cut(s)	1008
BssMI	GATC	8 cut(s)	36, 274, 438, 459, 555, 873, 1060, 1081
Bst2UI	CCWGG	1 cut(s)	416
Bst4CI	ACNGT	5 cut(s)	391, 436, 445, 515, 970
Bst6I	CTCTTC	1 cut(s)	69
BstC8I	GCNNGC	2 cut(s)	562, 1010
BstDEI	CTNAG	2 cut(s)	577, 909
BstENI	CCTNNNNNAGG	1 cut(s)	419
BstF5I	GGATG	1 cut(s)	801
BstFNI	CGCG	1 cut(s)	1010
BstHHI	GCGC	2 cut(s)	1010, 1012
BstKTI	GATC	8 cut(s)	39, 277, 441, 462, 558, 876, 1063, 1084
BstMAI	GTCTC	3 cut(s)	64, 109, 380
BstMBI	GATC	8 cut(s)	36, 274, 438, 459, 555, 873, 1060, 1081
BstMWI	GCNNNNNNNGC	5 cut(s)	182, 320, 867, 893, 1007
BstNI	CCWGG	1 cut(s)	416
BstNSI	RCATGY	1 cut(s)	88
BstSCI	CCNGG	2 cut(s)	414, 639
BstUI	CGCG	1 cut(s)	1010
BstV1I	GCAGC	3 cut(s)	537, 572, 594
BsuRI	GGCC	6 cut(s)	211, 350, 480, 564, 837, 960
BtgZI	GCGATG	1 cut(s)	157
BtrI	CACGTC	1 cut(s)	309
BtsCI	GGATG	1 cut(s)	801
BtsI	GCAGTG	1 cut(s)	717
BtsIMutI	CAGTG	5 cut(s)	441, 450, 717, 966, 1056
Cac8I	GCNNGC	2 cut(s)	562, 1010
CciI	TCATGA	1 cut(s)	462
CfoI	GCGC	2 cut(s)	1010, 1012
Cfr10I	RCCGGY	1 cut(s)	265
Cfr13I	GGNCC	4 cut(s)	479, 563, 836, 991
Csp6I	GTAC	4 cut(s)	286, 304, 637, 1086
CviAII	CATG	6 cut(s)	85, 100, 116, 121, 463, 871
CviQI	GTAC	4 cut(s)	286, 304, 637, 1086
DdeI	CTNAG	2 cut(s)	577, 909
DpnI	GATC	8 cut(s)	38, 276, 440, 461, 557, 875, 1062, 1083
DpnII	GATC	8 cut(s)	36, 274, 438, 459, 555, 873, 1060, 1081
EaeI	YGGCCR	1 cut(s)	348
Eam1104I	CTCTTC	1 cut(s)	69
EarI	CTCTTC	1 cut(s)	69
Ecl136II	GAGCTC	1 cut(s)	649
Eco24I	GRGCYC	1 cut(s)	651
Eco31I	GGTCTC	2 cut(s)	64, 109
Eco32I	GATATC	1 cut(s)	493
Eco47I	GGWCC	1 cut(s)	991
Eco53kI	GAGCTC	1 cut(s)	649
Eco57I	CTGAAG	1 cut(s)	50
EcoICRI	GAGCTC	1 cut(s)	649
EcoNI	CCTNNNNNAGG	1 cut(s)	419
EcoO109I	RGGNCCY	3 cut(s)	479, 836, 991
EcoRII	CCWGG	1 cut(s)	414
EcoRV	GATATC	1 cut(s)	493
EcoT38I	GRGCYC	1 cut(s)	651
FaeI	CATG	6 cut(s)	88, 103, 119, 124, 466, 874
FalI	AAGNNNNNCTT	2 cut(s)	32, 64
FaqI	GGGAC	1 cut(s)	761
FatI	CATG	6 cut(s)	84, 99, 115, 120, 462, 870
FbaI	TGATCA	4 cut(s)	274, 438, 459, 873
Fnu4HI	GCNGC	4 cut(s)	526, 583, 586, 885
FokI	GGATG	1 cut(s)	808
FriOI	GRGCYC	1 cut(s)	651
Fsp4HI	GCNGC	4 cut(s)	526, 583, 586, 885
FspBI	CTAG	3 cut(s)	383, 890, 998
GlaI	GCGC	2 cut(s)	1009, 1011
GluI	GCNGC	4 cut(s)	526, 583, 586, 885
GsaI	CCCAGC	1 cut(s)	748
GsuI	CTGGAG	1 cut(s)	798
HaeIII	GGCC	6 cut(s)	211, 350, 480, 564, 837, 960
HapII	CCGG	3 cut(s)	266, 347, 641
HhaI	GCGC	2 cut(s)	1010, 1012
Hin1II	CATG	6 cut(s)	88, 103, 119, 124, 466, 874
Hin6I	GCGC	2 cut(s)	1008, 1010
HinP1I	GCGC	2 cut(s)	1008, 1010
HincII	GTYRAC	1 cut(s)	394
HindII	GTYRAC	1 cut(s)	394
HinfI	GANTC	4 cut(s)	8, 124, 536, 749
HpaII	CCGG	3 cut(s)	266, 347, 641
HphI	GGTGA	1 cut(s)	871
Hpy166II	GTNNAC	3 cut(s)	306, 394, 919
Hpy188I	TCNGA	2 cut(s)	239, 926
Hpy188III	TCNNGA	7 cut(s)	34, 194, 226, 260, 272, 463, 777
Hpy8I	GTNNAC	3 cut(s)	306, 394, 919
HpyAV	CCTTC	6 cut(s)	172, 190, 353, 367, 415, 683
HpyCH4III	ACNGT	5 cut(s)	391, 436, 445, 515, 970
HpyCH4IV	ACGT	4 cut(s)	153, 308, 396, 626
HpyCH4V	TGCA	5 cut(s)	323, 710, 811, 870, 948
HpyF10VI	GCNNNNNNNGC	5 cut(s)	182, 320, 867, 893, 1007
HpyF3I	CTNAG	2 cut(s)	577, 909
HpySE526I	ACGT	4 cut(s)	153, 308, 396, 626
Hsp92II	CATG	6 cut(s)	88, 103, 119, 124, 466, 874
HspAI	GCGC	2 cut(s)	1008, 1010
Ksp22I	TGATCA	4 cut(s)	274, 438, 459, 873
Kzo9I	GATC	8 cut(s)	36, 274, 438, 459, 555, 873, 1060, 1081
LmnI	GCTCC	3 cut(s)	452, 762, 938
Lsp1109I	GCAGC	3 cut(s)	537, 572, 594
LweI	GCATC	2 cut(s)	332, 1010
MaeI	CTAG	3 cut(s)	383, 890, 998
MaeII	ACGT	4 cut(s)	153, 308, 396, 626
MaeIII	GTNAC	5 cut(s)	125, 149, 515, 847, 1034
MalI	GATC	8 cut(s)	38, 276, 440, 461, 557, 875, 1062, 1083
MbiI	CCGCTC	1 cut(s)	887
MboI	GATC	8 cut(s)	36, 274, 438, 459, 555, 873, 1060, 1081
MboII	GAAGA	4 cut(s)	56, 598, 605, 643
MhlI	GDGCHC	1 cut(s)	651
MluCI	AATT	3 cut(s)	426, 722, 933
MlyI	GAGTC	3 cut(s)	17, 133, 743
MmeI	TCCRAC	1 cut(s)	666
MnlI	CCTC	8 cut(s)	245, 443, 494, 827, 875, 932, 971, 1005
MseI	TTAA	3 cut(s)	111, 399, 569
MslI	CAYNNNNRTG	1 cut(s)	98
MspA1I	CMGCKG	1 cut(s)	585
MspI	CCGG	3 cut(s)	266, 347, 641
MspR9I	CCNGG	2 cut(s)	416, 641
MvaI	CCWGG	1 cut(s)	416
MvnI	CGCG	1 cut(s)	1010
MwoI	GCNNNNNNNGC	5 cut(s)	182, 320, 867, 893, 1007
NciI	CCSGG	1 cut(s)	641
NdeII	GATC	8 cut(s)	36, 274, 438, 459, 555, 873, 1060, 1081
NlaIII	CATG	6 cut(s)	88, 103, 119, 124, 466, 874
NlaIV	GGNNCC	6 cut(s)	481, 565, 758, 838, 940, 993
NmeAIII	GCCGAG	1 cut(s)	237
NmuCI	GTSAC	4 cut(s)	125, 149, 515, 847
NspI	RCATGY	1 cut(s)	88
PagI	TCATGA	1 cut(s)	462
PauI	GCGCGC	1 cut(s)	1008
PfeI	GAWTC	1 cut(s)	536
PkrI	GCNGC	4 cut(s)	527, 584, 587, 886
PleI	GAGTC	3 cut(s)	16, 132, 743
PpsI	GAGTC	3 cut(s)	16, 132, 743
PpuMI	RGGWCCY	1 cut(s)	991
Psp124BI	GAGCTC	1 cut(s)	651
Psp1406I	AACGTT	1 cut(s)	396
Psp5II	RGGWCCY	1 cut(s)	991
Psp6I	CCWGG	1 cut(s)	414
PspFI	CCCAGC	1 cut(s)	744
PspGI	CCWGG	1 cut(s)	414
PspN4I	GGNNCC	6 cut(s)	481, 565, 758, 838, 940, 993
PspPI	GGNCC	4 cut(s)	479, 563, 836, 991
PspPPI	RGGWCCY	1 cut(s)	991
PteI	GCGCGC	1 cut(s)	1008
PvuII	CAGCTG	1 cut(s)	585
RsaI	GTAC	4 cut(s)	287, 305, 638, 1087
RsaNI	GTAC	4 cut(s)	286, 304, 637, 1086
RseI	CAYNNNNRTG	1 cut(s)	98
SacI	GAGCTC	1 cut(s)	651
SaqAI	TTAA	3 cut(s)	111, 399, 569
SatI	GCNGC	4 cut(s)	526, 583, 586, 885
Sau3AI	GATC	8 cut(s)	36, 274, 438, 459, 555, 873, 1060, 1081
Sau96I	GGNCC	4 cut(s)	479, 563, 836, 991
SchI	GAGTC	3 cut(s)	17, 133, 743
ScrFI	CCNGG	2 cut(s)	416, 641
SduI	GDGCHC	1 cut(s)	651
SfaNI	GCATC	2 cut(s)	332, 1010
SinI	GGWCC	1 cut(s)	991
SmiMI	CAYNNNNRTG	1 cut(s)	98
SmlI	CTYRAG	3 cut(s)	260, 751, 1040
SmoI	CTYRAG	3 cut(s)	260, 751, 1040
Sse9I	AATT	3 cut(s)	426, 722, 933
SsiI	CCGC	4 cut(s)	588, 852, 882, 885
SspMI	CTAG	3 cut(s)	383, 890, 998
SstI	GAGCTC	1 cut(s)	651
StyD4I	CCNGG	2 cut(s)	414, 639
TaaI	ACNGT	5 cut(s)	391, 436, 445, 515, 970
TaiI	ACGT	4 cut(s)	156, 311, 399, 629
TaqI	TCGA	1 cut(s)	11
TasI	AATT	3 cut(s)	426, 722, 933
TatI	WGTACW	2 cut(s)	285, 303
TauI	GCSGC	1 cut(s)	887
TfiI	GAWTC	1 cut(s)	536
Tru1I	TTAA	3 cut(s)	111, 399, 569
Tru9I	TTAA	3 cut(s)	111, 399, 569
TscAI	CASTG	5 cut(s)	441, 450, 717, 973, 1056
TseFI	GTSAC	4 cut(s)	125, 149, 515, 847
TseI	GCWGC	3 cut(s)	525, 582, 585
Tsp45I	GTSAC	4 cut(s)	125, 149, 515, 847
TspDTI	ATGAA	3 cut(s)	314, 349, 598
TspGWI	ACGGA	1 cut(s)	757
TspRI	CASTG	5 cut(s)	441, 450, 717, 973, 1056
VpaK11BI	GGWCC	1 cut(s)	991
XagI	CCTNNNNNAGG	1 cut(s)	419
XceI	RCATGY	1 cut(s)	88
XspI	CTAG	3 cut(s)	383, 890, 998

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.