Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0002964

Physical Location & Seq

Genomic Coordinates Forward (+)

17868522 .. 17873261

Gene Structure 4740 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G48360.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2241 bp

ATGCTCACCGGACGGGAGAGTTTGCTCCGGTTGATTGGAAAGCGCCGGCGATTTCTCCCCAATCGCCACCTTCTTCTCTCCGCTCATACTCCGAATTCGTTAAATCTCGAGTTCAACGACTATGGCAATCTTGTCTCATTAGCCGGAGATGATTGTCGTTTATCAGAGGATCCGACTTCTTCAGATGACCCGAGTAAATTCTCTGATGATTTGAGTTTATCCACGAGGAAGAAACGGAGATTAACTCAGACCACTCTTCTTCAGTCAAGTTTCTTGTCAGTGCCAAAACAATTAGAAGATGGTCTTGTAATTTGTACTCAGCAGAAATCGATACTCGATTCTGAAACTTTTGAATTCAGTTTGGTGCAAAGAAGTGAGCCTAGTGAGTCTATTTGCTGCAAGGTTGAAGATGGTTCATGTTCTCCAAGTAGGGAGGAGAGTTTGAAAACTGTGACTTTAGATGAAGACAATGGTGAGGCTATTGAAACCTTTATAGTTGGTAGGAAGTTCAGTGATGTTCAGGATTTAGAAATTGGGGGTGACATTTTTCTTTTGAGACATCCTGAGAATGTCAAAGATCGAAACGCTATAAAGGTTATTTCTGGAGACTCTGAAATGCTTGGGTATCTACCTAAAGATATATCCCAGTGCTTGTCCCCGCTGATCGATGACTATGACCTTAAGTTTGAGGGAACGATAACATCTGTTCCGAAGAAATCTTCTGAAGCTGTTCTGATCAAGGTTGTTTGTCACAAGATGAGATCTGATGGTTGGAAGGAATGTGAATTGTATGGAGATTTTAAACCTCTTTGGGAGAAAGTTCTTCAGGTTGTTGAGCATCAGATGCAATTTCCGCCTAAAACAACAAGATATCAGTTGAACTTCAACGTATTACTACAAGAAGTTCTAAGAAGCTGCTCTCACTTATTCACAGCCGATGAAAAGGCATTCTTGGAATCTTTCCCCACACTTTCAGAGGATAGCCAGAGACTTTTCATCCGGCTTTACACACGAAAAGGACCTTGGTTTAGGCTATCAAATATATCATACCCTGAGGTGACTGATTCTCTTCAAGCCCTGAAGGATCTGACAGTCAGGGGATTTATGAGTTCAGTGAAGGACGCAAATGAACTCGATAACCAAAAGATGAAGGAAATCACAGAGTTGCTTAACGTCACTGAACTTCGTGATATCTTATCTATGAACAAGGTGTTCAGTCGCACCTCAAGAAAGAGAGACCTTATTAATTCTCTTTGTTCTTGTTACAATGATGGAACGAGAATAAATCTAGCAACAGTAATTCTAGAAAGAACAGGACTATGTGCTAAGGTATCAAGTACAGCAGAATCTCTCATATGGCGCGTTGAGAGGCTTTTCTTCCTCAATGGGGAGCAAGATCTATCGTCTTTTGTTCTGCTGGATCTTGGTATTATCAAATACCCAACTTACAAATGCATTGACTCAGAGCAAATATTCTCGAATCGGACCAAGCTTTTAGCATATGAAGAGGCCATTGAAGTGGCTCAGTTGATGGATGAGTCTCTTGACAATGAGGATCCTCAGACAGTGTTGAAATGCATTATAATTGCTGAAACCCGCATATCCAGTTCCTCTTTGGATTCTGCTCACGCTGCTGCATTTAATCGCTTTACAGCTCCATGGGTTAACTCAAAGGTGGTTCTCTTAGGAGTTTCCTTTTTTGAGAACCAGAAGAGGTACAACCGAGCAGTTTATCTACTGAGGCGATTGCTCAGCTGTTTTAATTGTGATGGGAGACGAGGATACTGGACAGTCAGGTTATCAACGGATTTGGAGCACATGGGACGTCCAAATGAGAGTCTTACAGTTGCAGAGCAGGGACTATTGGATCCTTGGGTGCGTGCTGGTTCAAGGGTAGCTTTGCAAAGGCGGATTCTTCGTTTGGCAAAACCTCCAAGACGCTGGAAAACTCCCACTTTTTCAAATCTCGTCGACAACAAGATCCCCGAGGTTACTATTCAAGGGAGATCACTGAACTGTGAAGTTGGCATAAAAAATAGGTTTTATGGAGAAGATGGAGAACAATGTGGAGTGGAGCAGCTCGCATTGCAGTATTACAGTGGAGAAGGAGGAGGATGGCAAGGAATTCATACAGAGAGTAGTATCTGGTTAACGATTTTCGGGCTTCTCATGTGGGATATTCTATTTTCCGATGTCCCTGGCGTTTTCCAAACCCGATTCCAGGTGAATGAAACTCAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000280 GO:0003674 GO:0003676 GO:0003677 GO:0003824 GO:0004518 GO:0004519 GO:0004520 GO:0004527 GO:0004536 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006281 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007049 GO:0007059 GO:0007127 GO:0007129 GO:0008150 GO:0008152 GO:0008409 GO:0009987 GO:0016043 GO:0016787 GO:0016788 GO:0016888 GO:0016893 GO:0017108 GO:0022402 GO:0022414 GO:0033554 GO:0034641 GO:0036297 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0045132 GO:0045143 GO:0046483 GO:0048256 GO:0048285 GO:0050896 GO:0051276 GO:0051321 GO:0051716 GO:0061982 GO:0070192 GO:0070336 GO:0071704 GO:0071840 GO:0090304 GO:0090305 GO:0097159 GO:0098813 GO:0140013 GO:0140097 GO:1901360 GO:1901363 GO:1903046

KEGG Pathways

Metabolic & Signaling

ko03460 map03460

Pfam Domains

Protein Families

HIRAN VRR_NUC

Protein Analysis

746

Amino Acids

84.97

Weight (kDa)

5.69

Isoelectric Point (pI)

50.35

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HIRAN	PF08797	160 - 249	1.2e-20	HIRAN domain
FAN1_HTH	PF21315	291 - 369	1.5e-17	FAN1, HTH domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002964)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G48360 AT1G48360 AT1G48360 AT1G48360 AT1G48360 AT1G48360
fragaria_vesca	FvH4_4g12370 FvH4_4g12370 FvH4_4g12370 FvH4_4g12370 FvH4_4g12370 FvH4_4g12370 FvH4_4g12370 FvH4_4g12370
malus_domestica	MD00G1163900.v1.1 MD09G1250200.v1.1 MD09G1250400.v1.1
prunus_persica	Prupe.1G176700_v2.0.a1 Prupe.1G176700_v2.0.a1 Prupe.1G176700_v2.0.a1 Prupe.1G176700_v2.0.a1 Prupe.1G176700_v2.0.a1
pyrus_communis	pycom04g02280 pycom13g29380
rosa_chinensis	RchiOBHm_Chr4g0410481
rosa_laevigata	RLG00000008424
rosa_multiflora	Rmu_sc0001969.1_g000008 Rmu_sc0016181.1_g000004
rosa_roxburghii	Rroxscaffold_5G00355290
rosa_rugosa	Rorug04G0114400
rosa_samantha	Rh4AG160900 Rh4BG160300 Rh4CG173100 Rh4DG156400
rosa_wichuraiana	Rw0G014390 Rw0G014400 Rw4G013420 Rw4G037760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1583
AatII	GACGTC	1 cut(s)	1828
AccBSI	CCGCTC	1 cut(s)	83
AccI	GTMKAC	1 cut(s)	1971
AccII	CGCG	1 cut(s)	1362
AciI	CCGC	5 cut(s)	81, 659, 854, 1597, 1909
AclWI	GGATC	9 cut(s)	164, 177, 1092, 1428, 1550, 1563, 1862, 1875, 1975
AcsI	RAATTY	4 cut(s)	94, 197, 353, 2124
AcuI	CTGAAG	5 cut(s)	165, 245, 744, 809, 1100
AcyI	GRCGYC	1 cut(s)	1825
AfaI	GTAC	3 cut(s)	316, 1339, 1718
AfiI	CCNNNNNNNGG	2 cut(s)	1387, 2221
AflII	CTTAAG	1 cut(s)	680
AjnI	CCWGG	2 cut(s)	2197, 2220
AjuI	GAANNNNNNNTTGG	2 cut(s)	1006, 1038
AluBI	AGCT	7 cut(s)	728, 915, 1492, 1655, 1755, 1898, 2080
AluI	AGCT	7 cut(s)	728, 915, 1492, 1655, 1755, 1898, 2080
Alw21I	GWGCWC	1 cut(s)	1818
Alw26I	GTCTC	7 cut(s)	139, 550, 600, 982, 1230, 1545, 1768
AlwI	GGATC	9 cut(s)	164, 177, 1092, 1428, 1550, 1563, 1862, 1875, 1975
Ama87I	CYCGRG	3 cut(s)	107, 190, 1985
AoxI	GGCC	1 cut(s)	1509
ApeKI	GCWGC	5 cut(s)	396, 915, 1631, 1634, 2077
ApoI	RAATTY	4 cut(s)	94, 197, 353, 2124
ArsI	GACNNNNNNTTYG	2 cut(s)	668, 700
AseI	ATTAAT	1 cut(s)	1245
Asp700I	GAANNNNTTC	1 cut(s)	729
AspLEI	GCGC	2 cut(s)	45, 1362
AspS9I	GGNCC	2 cut(s)	1019, 1485
AsuHPI	GGTGA	4 cut(s)	485, 551, 1069, 2236
AvaI	CYCGRG	3 cut(s)	107, 190, 1985
AvaII	GGWCC	2 cut(s)	1019, 1485
AxyI	CCTNAGG	1 cut(s)	1053
BamHI	GGATCC	3 cut(s)	169, 1555, 1867
BauI	CACGAG	1 cut(s)	223
BbsI	GAAGAC	1 cut(s)	471
Bbv12I	GWGCWC	1 cut(s)	1818
BbvI	GCAGC	5 cut(s)	383, 902, 1618, 1621, 2089
BccI	CCATC	8 cut(s)	293, 404, 761, 1265, 1525, 1763, 2048, 2109
BciT130I	CCWGG	2 cut(s)	2199, 2222
BciVI	GTATCC	1 cut(s)	1775
BclI	TGATCA	1 cut(s)	735
BcoDI	GTCTC	7 cut(s)	139, 550, 600, 982, 1230, 1545, 1768
BfaI	CTAG	3 cut(s)	381, 1289, 1304
BfoI	RGCGCY	1 cut(s)	46
BfrI	CTTAAG	1 cut(s)	680
BfuI	GTATCC	1 cut(s)	1775
BglII	AGATCT	2 cut(s)	761, 1396
BisI	GCNGC	5 cut(s)	397, 916, 1632, 1635, 2078
BlpI	GCTNAGC	1 cut(s)	1751
BlsI	GCNGC	5 cut(s)	398, 917, 1633, 1636, 2079
Bme1390I	CCNGG	2 cut(s)	2199, 2222
Bme18I	GGWCC	2 cut(s)	1019, 1485
BmeT110I	CYCGRG	3 cut(s)	107, 190, 1985
BmgT120I	GGNCC	2 cut(s)	1019, 1485
BmiI	GGNNCC	3 cut(s)	171, 1557, 1869
BmrFI	CCNGG	2 cut(s)	2199, 2222
BmrI	ACTGGG	1 cut(s)	640
BmsI	GCATC	2 cut(s)	834, 847
BmuI	ACTGGG	1 cut(s)	640
BpiI	GAAGAC	1 cut(s)	471
BplI	GAGNNNNNCTC	2 cut(s)	229, 261
BpmI	CTGGAG	1 cut(s)	624
Bpu10I	CCTNAGC	1 cut(s)	1326
Bpu1102I	GCTNAGC	1 cut(s)	1751
BpuEI	CTTGAG	1 cut(s)	1210
Bsa29I	ATCGAT	2 cut(s)	329, 666
BsaHI	GRCGYC	1 cut(s)	1825
BsaI	GGTCTC	1 cut(s)	1230
BsaJI	CCNNGG	5 cut(s)	1022, 1658, 1871, 1986, 2197
BsaWI	WCCGGW	2 cut(s)	8, 27
Bsc4I	CCNNNNNNNGG	2 cut(s)	1387, 2221
Bse118I	RCCGGY	1 cut(s)	45
Bse1I	ACTGG	3 cut(s)	646, 1605, 1790
Bse21I	CCTNAGG	1 cut(s)	1053
Bse3DI	GCAATG	1 cut(s)	2084
BseBI	CCWGG	2 cut(s)	2199, 2222
BseCI	ATCGAT	2 cut(s)	329, 666
BseDI	CCNNGG	5 cut(s)	1022, 1658, 1871, 1986, 2197
BseGI	GGATG	4 cut(s)	559, 996, 1540, 2120
BseLI	CCNNNNNNNGG	2 cut(s)	1387, 2221
BseMI	GCAATG	1 cut(s)	2084
BseMII	CTCAG	9 cut(s)	260, 332, 555, 1044, 1476, 1538, 1574, 1730, 1765
BseNI	ACTGG	3 cut(s)	646, 1605, 1790
BseRI	GAGGAG	2 cut(s)	449, 2124
BseXI	GCAGC	5 cut(s)	383, 902, 1618, 1621, 2089
Bsh1236I	CGCG	1 cut(s)	1362
BshFI	GGCC	1 cut(s)	1511
BshVI	ATCGAT	2 cut(s)	329, 666
BsiHKAI	GWGCWC	1 cut(s)	1818
BsiHKCI	CYCGRG	3 cut(s)	107, 190, 1985
BsiSI	CCGG	5 cut(s)	9, 28, 46, 144, 1000
BslFI	GGGAC	4 cut(s)	640, 1836, 1872, 2180
BslI	CCNNNNNNNGG	2 cut(s)	1387, 2221
BsmAI	GTCTC	7 cut(s)	139, 550, 600, 982, 1230, 1545, 1768
BsmBI	CGTCTC	1 cut(s)	1768
BsmFI	GGGAC	4 cut(s)	640, 1836, 1872, 2180
BsmI	GAATGC	1 cut(s)	947
BsnI	GGCC	1 cut(s)	1511
Bso31I	GGTCTC	1 cut(s)	1230
BsoBI	CYCGRG	3 cut(s)	107, 190, 1985
Bsp1286I	GDGCHC	1 cut(s)	1818
Bsp1720I	GCTNAGC	1 cut(s)	1751
Bsp19I	CCATGG	1 cut(s)	1658
BspACI	CCGC	5 cut(s)	81, 659, 854, 1597, 1909
BspANI	GGCC	1 cut(s)	1511
BspCNI	CTCAG	9 cut(s)	259, 331, 556, 1045, 1475, 1537, 1573, 1731, 1764
BspDI	ATCGAT	2 cut(s)	329, 666
BspFNI	CGCG	1 cut(s)	1362
BspLI	GGNNCC	3 cut(s)	171, 1557, 1869
BspPI	GGATC	9 cut(s)	164, 177, 1092, 1428, 1550, 1563, 1862, 1875, 1975
BspTI	CTTAAG	1 cut(s)	680
BspTNI	GGTCTC	1 cut(s)	1230
BsrBI	CCGCTC	1 cut(s)	83
BsrDI	GCAATG	1 cut(s)	2084
BsrFI	RCCGGY	1 cut(s)	45
BsrI	ACTGG	3 cut(s)	646, 1605, 1790
BssAI	RCCGGY	1 cut(s)	45
BssECI	CCNNGG	5 cut(s)	1022, 1658, 1871, 1986, 2197
BssNI	GRCGYC	1 cut(s)	1825
BssSI	CACGAG	1 cut(s)	223
BssT1I	CCWWGG	3 cut(s)	1022, 1658, 1871
Bst2BI	CACGAG	1 cut(s)	223
Bst2UI	CCWGG	2 cut(s)	2199, 2222
Bst4CI	ACNGT	8 cut(s)	451, 1093, 1297, 1567, 1792, 1846, 2018, 2099
Bst6I	CTCTTC	4 cut(s)	261, 1074, 1500, 1706
BstACI	GRCGYC	1 cut(s)	1825
BstAFI	CTTAAG	1 cut(s)	680
BstAPI	GCANNNNNTGC	1 cut(s)	844
BstC8I	GCNNGC	3 cut(s)	47, 1881, 2082
BstDSI	CCRYGG	1 cut(s)	1658
BstF5I	GGATG	4 cut(s)	559, 996, 1540, 2120
BstFNI	CGCG	1 cut(s)	1362
BstH2I	RGCGCY	1 cut(s)	46
BstHHI	GCGC	2 cut(s)	45, 1362
BstMAI	GTCTC	7 cut(s)	139, 550, 600, 982, 1230, 1545, 1768
BstMWI	GCNNNNNNNGC	4 cut(s)	844, 853, 1631, 2086
BstNI	CCWGG	2 cut(s)	2199, 2222
BstSCI	CCNGG	2 cut(s)	2197, 2220
BstUI	CGCG	1 cut(s)	1362
BstV1I	GCAGC	5 cut(s)	383, 902, 1618, 1621, 2089
BstV2I	GAAGAC	1 cut(s)	471
BstX2I	RGATCY	8 cut(s)	169, 761, 1084, 1396, 1420, 1555, 1867, 1980
BstXI	CCANNNNNNTGG	2 cut(s)	1519, 1941
BstYI	RGATCY	8 cut(s)	169, 761, 1084, 1396, 1420, 1555, 1867, 1980
Bsu15I	ATCGAT	2 cut(s)	329, 666
Bsu36I	CCTNAGG	1 cut(s)	1053
BsuI	GTATCC	1 cut(s)	1775
BsuRI	GGCC	1 cut(s)	1511
BsuTUI	ATCGAT	2 cut(s)	329, 666
BtgI	CCRYGG	1 cut(s)	1658
BtsCI	GGATG	4 cut(s)	559, 996, 1540, 2120
BtsIMutI	CAGTG	8 cut(s)	285, 517, 653, 1119, 1176, 1572, 2009, 2104
Cac8I	GCNNGC	3 cut(s)	47, 1881, 2082
CfoI	GCGC	2 cut(s)	45, 1362
Cfr10I	RCCGGY	1 cut(s)	45
Cfr13I	GGNCC	2 cut(s)	1019, 1485
ClaI	ATCGAT	2 cut(s)	329, 666
CseI	GACGC	2 cut(s)	1130, 1947
Csp6I	GTAC	3 cut(s)	315, 1338, 1717
CviAII	CATG	4 cut(s)	417, 1659, 1819, 2170
CviQI	GTAC	3 cut(s)	315, 1338, 1717
DraI	TTTAAA	1 cut(s)	802
Eam1104I	CTCTTC	4 cut(s)	261, 1074, 1500, 1706
EarI	CTCTTC	4 cut(s)	261, 1074, 1500, 1706
EciI	GGCGGA	2 cut(s)	843, 1924
Eco130I	CCWWGG	3 cut(s)	1022, 1658, 1871
Eco31I	GGTCTC	1 cut(s)	1230
Eco32I	GATATC	2 cut(s)	872, 1192
Eco47I	GGWCC	2 cut(s)	1019, 1485
Eco57I	CTGAAG	5 cut(s)	165, 245, 744, 809, 1100
Eco81I	CCTNAGG	1 cut(s)	1053
Eco88I	CYCGRG	3 cut(s)	107, 190, 1985
EcoO109I	RGGNCCY	1 cut(s)	1019
EcoRI	GAATTC	3 cut(s)	94, 353, 2124
EcoRII	CCWGG	2 cut(s)	2197, 2220
EcoRV	GATATC	2 cut(s)	872, 1192
EcoT14I	CCWWGG	3 cut(s)	1022, 1658, 1871
EcoT22I	ATGCAT	2 cut(s)	1457, 1580
ErhI	CCWWGG	3 cut(s)	1022, 1658, 1871
Esp3I	CGTCTC	1 cut(s)	1768
FaeI	CATG	4 cut(s)	420, 1662, 1822, 2173
FalI	AAGNNNNNCTT	6 cut(s)	288, 320, 935, 967, 1882, 1914
FaqI	GGGAC	4 cut(s)	640, 1836, 1872, 2180
FatI	CATG	4 cut(s)	416, 1658, 1818, 2169
FauI	CCCGC	2 cut(s)	666, 1604
FauNDI	CATATG	2 cut(s)	1355, 1501
FbaI	TGATCA	1 cut(s)	735
FblI	GTMKAC	1 cut(s)	1971
Fnu4HI	GCNGC	5 cut(s)	397, 916, 1632, 1635, 2078
FokI	GGATG	4 cut(s)	546, 983, 1547, 2127
Fsp4HI	GCNGC	5 cut(s)	397, 916, 1632, 1635, 2078
FspBI	CTAG	3 cut(s)	381, 1289, 1304
GlaI	GCGC	2 cut(s)	44, 1361
GluI	GCNGC	5 cut(s)	397, 916, 1632, 1635, 2078
GsuI	CTGGAG	1 cut(s)	624
HaeII	RGCGCY	1 cut(s)	46
HaeIII	GGCC	1 cut(s)	1511
HapII	CCGG	5 cut(s)	9, 28, 46, 144, 1000
HgaI	GACGC	2 cut(s)	1130, 1947
HhaI	GCGC	2 cut(s)	45, 1362
Hin1I	GRCGYC	1 cut(s)	1825
Hin1II	CATG	4 cut(s)	420, 1662, 1822, 2173
Hin6I	GCGC	2 cut(s)	43, 1360
HinP1I	GCGC	2 cut(s)	43, 1360
HincII	GTYRAC	3 cut(s)	1666, 1972, 2151
HindII	GTYRAC	3 cut(s)	1666, 1972, 2151
HindIII	AAGCTT	1 cut(s)	1490
HpaI	GTTAAC	2 cut(s)	1666, 2151
HpaII	CCGG	5 cut(s)	9, 28, 46, 144, 1000
HphI	GGTGA	4 cut(s)	485, 551, 1069, 2236
Hpy166II	GTNNAC	3 cut(s)	1666, 1972, 2151
Hpy188III	TCNNGA	9 cut(s)	107, 521, 563, 603, 1187, 1227, 1304, 1477, 1544
Hpy8I	GTNNAC	3 cut(s)	1666, 1972, 2151
Hpy99I	CGWCG	1 cut(s)	1973
HpyAV	CCTTC	6 cut(s)	80, 769, 1075, 1111, 1144, 2099
HpyCH4III	ACNGT	8 cut(s)	451, 1093, 1297, 1567, 1792, 1846, 2018, 2099
HpyCH4IV	ACGT	3 cut(s)	888, 1173, 1825
HpyCH4V	TGCA	9 cut(s)	367, 399, 847, 1455, 1578, 1637, 1850, 1903, 2089
HpyF10VI	GCNNNNNNNGC	4 cut(s)	844, 853, 1631, 2086
HpySE526I	ACGT	3 cut(s)	888, 1173, 1825
Hsp92I	GRCGYC	1 cut(s)	1825
Hsp92II	CATG	4 cut(s)	420, 1662, 1822, 2173
HspAI	GCGC	2 cut(s)	43, 1360
KroI	GCCGGC	1 cut(s)	45
KroNI	GCCGGC	1 cut(s)	47
Ksp22I	TGATCA	1 cut(s)	735
KspAI	GTTAAC	2 cut(s)	1666, 2151
LmnI	GCTCC	5 cut(s)	30, 1390, 1660, 1813, 2074
Lsp1109I	GCAGC	5 cut(s)	383, 902, 1618, 1621, 2089
LweI	GCATC	2 cut(s)	834, 847
MaeI	CTAG	3 cut(s)	381, 1289, 1304
MaeII	ACGT	3 cut(s)	888, 1173, 1825
MaeIII	GTNAC	7 cut(s)	451, 539, 749, 1057, 1174, 1262, 1990
MbiI	CCGCTC	1 cut(s)	83
MflI	RGATCY	8 cut(s)	169, 761, 1084, 1396, 1420, 1555, 1867, 1980
MhlI	GDGCHC	1 cut(s)	1818
MlyI	GAGTC	5 cut(s)	395, 602, 1454, 1547, 1846
MmeI	TCCRAC	2 cut(s)	197, 752
Mph1103I	ATGCAT	2 cut(s)	1457, 1580
MreI	CGCCGGCG	1 cut(s)	45
MroNI	GCCGGC	1 cut(s)	45
MroXI	GAANNNNTTC	1 cut(s)	729
MslI	CAYNNNNRTG	1 cut(s)	1517
MspA1I	CMGCKG	2 cut(s)	661, 1755
MspCI	CTTAAG	1 cut(s)	680
MspI	CCGG	5 cut(s)	9, 28, 46, 144, 1000
MspR9I	CCNGG	2 cut(s)	2199, 2222
Mva1269I	GAATGC	1 cut(s)	947
MvaI	CCWGG	2 cut(s)	2199, 2222
MvnI	CGCG	1 cut(s)	1362
MwoI	GCNNNNNNNGC	4 cut(s)	844, 853, 1631, 2086
NaeI	GCCGGC	1 cut(s)	47
NcoI	CCATGG	1 cut(s)	1658
NdeI	CATATG	2 cut(s)	1355, 1501
NgoMIV	GCCGGC	1 cut(s)	45
NlaIII	CATG	4 cut(s)	420, 1662, 1822, 2173
NlaIV	GGNNCC	3 cut(s)	171, 1557, 1869
NmuCI	GTSAC	5 cut(s)	451, 539, 749, 1057, 1174
NsiI	ATGCAT	2 cut(s)	1457, 1580
PaeR7I	CTCGAG	1 cut(s)	107
PcsI	WCGNNNNNNNCGW	1 cut(s)	114
PctI	GAATGC	1 cut(s)	947
PdiI	GCCGGC	1 cut(s)	47
PdmI	GAANNNNTTC	1 cut(s)	729
PfeI	GAWTC	8 cut(s)	338, 956, 1064, 1346, 1480, 1619, 1912, 2217
PkrI	GCNGC	5 cut(s)	398, 917, 1633, 1636, 2079
PleI	GAGTC	5 cut(s)	394, 602, 1454, 1546, 1845
PpsI	GAGTC	5 cut(s)	394, 602, 1454, 1546, 1845
PpuMI	RGGWCCY	1 cut(s)	1019
PshBI	ATTAAT	1 cut(s)	1245
PsiI	TTATAA	1 cut(s)	1583
Psp5II	RGGWCCY	1 cut(s)	1019
Psp6I	CCWGG	2 cut(s)	2197, 2220
PspGI	CCWGG	2 cut(s)	2197, 2220
PspN4I	GGNNCC	3 cut(s)	171, 1557, 1869
PspPI	GGNCC	2 cut(s)	1019, 1485
PspPPI	RGGWCCY	1 cut(s)	1019
PsuI	RGATCY	8 cut(s)	169, 761, 1084, 1396, 1420, 1555, 1867, 1980
PvuII	CAGCTG	1 cut(s)	1755
RsaI	GTAC	3 cut(s)	316, 1339, 1718
RsaNI	GTAC	3 cut(s)	315, 1338, 1717
RseI	CAYNNNNRTG	1 cut(s)	1517
SalI	GTCGAC	1 cut(s)	1970
SatI	GCNGC	5 cut(s)	397, 916, 1632, 1635, 2078
Sau96I	GGNCC	2 cut(s)	1019, 1485
SchI	GAGTC	5 cut(s)	395, 602, 1454, 1547, 1846
ScrFI	CCNGG	2 cut(s)	2199, 2222
SduI	GDGCHC	1 cut(s)	1818
SfaNI	GCATC	2 cut(s)	834, 847
Sfr274I	CTCGAG	1 cut(s)	107
SgrAI	CRCCGGYG	1 cut(s)	45
SinI	GGWCC	2 cut(s)	1019, 1485
SlaI	CTCGAG	1 cut(s)	107
SmiMI	CAYNNNNRTG	1 cut(s)	1517
SmlI	CTYRAG	3 cut(s)	107, 680, 1225
SmoI	CTYRAG	3 cut(s)	107, 680, 1225
SsiI	CCGC	5 cut(s)	81, 659, 854, 1597, 1909
SspI	AATATT	1 cut(s)	1473
SspMI	CTAG	3 cut(s)	381, 1289, 1304
StyD4I	CCNGG	2 cut(s)	2197, 2220
StyI	CCWWGG	3 cut(s)	1022, 1658, 1871
TaaI	ACNGT	8 cut(s)	451, 1093, 1297, 1567, 1792, 1846, 2018, 2099
TaiI	ACGT	3 cut(s)	891, 1176, 1828
TaqI	TCGA	8 cut(s)	108, 329, 336, 580, 666, 1134, 1478, 1971
TatI	WGTACW	2 cut(s)	314, 1337
TfiI	GAWTC	8 cut(s)	338, 956, 1064, 1346, 1480, 1619, 1912, 2217
TscAI	CASTG	8 cut(s)	285, 517, 653, 1119, 1183, 1572, 2016, 2104
TseFI	GTSAC	5 cut(s)	451, 539, 749, 1057, 1174
TseI	GCWGC	5 cut(s)	396, 915, 1631, 1634, 2077
Tsp45I	GTSAC	5 cut(s)	451, 539, 749, 1057, 1174
TspDTI	ATGAA	9 cut(s)	405, 477, 954, 985, 1143, 1163, 1217, 1518, 2117
TspGWI	ACGGA	2 cut(s)	250, 1820
TspRI	CASTG	8 cut(s)	285, 517, 653, 1119, 1183, 1572, 2016, 2104
Vha464I	CTTAAG	1 cut(s)	680
VpaK11BI	GGWCC	2 cut(s)	1019, 1485
VspI	ATTAAT	1 cut(s)	1245
XapI	RAATTY	4 cut(s)	94, 197, 353, 2124
XbaI	TCTAGA	1 cut(s)	1303
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1612
XhoI	CTCGAG	1 cut(s)	107
XmiI	GTMKAC	1 cut(s)	1971
XmnI	GAANNNNTTC	1 cut(s)	729
XspI	CTAG	3 cut(s)	381, 1289, 1304
ZraI	GACGTC	1 cut(s)	1826
Zsp2I	ATGCAT	2 cut(s)	1457, 1580

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.