Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0002964

Physical Location & Seq

Genomic Coordinates Reverse (-)

33930017 .. 33939253

Gene Structure 9237 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00355290.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3381 bp

ATGCTAAAGGGAAGAGAAAGCTTGAGCCGATTGGTGGGCAAACGCCGGCGCTTCCTTCCCAATCGTCTTTCACTCCTCTCCGCCCCTACCACCACCCAGAGCTTATTGAATCTGGGTATCGATCCAAATGGCAAACTCGTGTCCCTGGAAGGCTCTTCAAATCAAGACGAACAAGAAAACACTGTGGTGGGCTCTGTTACTTGCCCTGTTTGCAGCGTCAAACTCAGTGCCCAAAACAACACCATCAATTCTCATCTGGATGAGTGTCTATCTAGAGGAACCAAACGAAAGCTAACCCAGCGCACACTTGTAGAGCTGAACTTCTGCCCAGTGTCGAAAATTCAAAATTTTTCCTGTGACTCTAAAGAGTTTGGAAATGATTTATTTCCTGCAGCTCATGATGAGAGTCATGTGCAAGATGCGACGTGGGGGTTGTCTAACATAAGGGCTGTTGACGAAAGTCAAAATCAGGTTGACAGTCCATCCGGAAACCCAATCAATAAGGAAGAGATCTGTGCGGCGCCAGATTTTGATGTGACCGTCACTCAGGACGACATATATGGGGTGATTCTTGAAACTTTTATTGTTGGCCGCAGGTTTGGTGATGAAACTGATTTATATCTTGGTGCAAGCATTCATCTCTCAAGAGATCCTGATAATGTTAAGGATCCCAACGCTATCAAGGTTGTTTATTCAGATTCAGGATGCCTTAAAATGCTTGGTTTTCTCCCTCGCAAGCTAGCTGAGTATTTGTCTCCTCTGATGGACCAGTATTGTCTAAATTTTGAGGGATGCATTACCTCTGTTCCCAAGCATTCTTTTGATGTTGTCCCAATACAGATAGTCTGTCACAAGACCAGTGATGATAGGGACTTTAATGATGACAAGGTTTTCAAATGTTTATGGAGAAATGCTCAGCAAGTAATTGAATCTACAAAGTCCTGTCCGCCCAGTGCAATAAAATATCAGGATAACTTTTGTGTTTTCATAGGTGAGGTTTTGAGAAACAGTTCTCACCTCTTGACAGATGATGAAAAGAATTTCATCGAGTCGTTTACTTCAATGTCAGATGATAGTCAGAGGCTATTTGTTCGGCTTTATACACGGAAAGGCCCATGGTTTCGGCTGTCTGCTATTTCATACCCAGAAGTACTGGATCCCCAACAAGCAGTGAAAGAGCTATCTGAGACAGGGTATGCATCTTGCTTTGAAATTACAAATAAACTATCTGATGATGATATTAAGGAGATTTTGGATTTGCTCACTGTATCTGAGCTACGTGAAATCTTGTGCATCCTTAAGCAGAGTTGCAATCGTGGCCTAAGAAAGCTGGATCTCATTGCATCTCTTATGTCTTCTTACAATGAAGATTTGTGCCCATTACTACCTAGTATGGTTTTGCATAGAACAGGATCCTGTGTTAGGATATCTTCAAATGCAGAGTCCCTTATCTGGCGTGCTGAGAGGCTTTTCTTCCTGAATGGTGAACAGGATCTCTCGGCATTTCTACTGGTGGATTTGGGAATAATCAAGTATCCAACTTACAAGTGCATAGTCTCACAACAAATTTTCTCAGCTCGAGATGACTTGCTTGGCTATGAAGAGGCTATTGAAGTGGCACAAATAGTTGATGAAGCTCTTGATGGAAGCAACACTGGATTGGTCTTAAAGTGCATAAAAATAGCTGATTCCCATTTATCAAATCCAGTTCAATCCTTGACCTCTGAATCAATGGCTCCATTCCTTTCCCACTTTTCAGCAACATTTGTCTACTCAAAAGTGGTTTTACTAGGAATTTCTTTTCTTGAGCGTGAGCGTAGAGTCACTGCACACGTTGAAGTAGAGACAACTGACACTGCAACTCATCATATCTGCCATATGTGTGGGCTTGGCTATGAAGATTCTATTACAACAAGCAAAGATAAGCTCTGTGATTCATTTCACACGCTAATAATGATATCTGAATATAAGCTGCCTGAACTTGATATAGATCATGTTTCCTACATCAAGCAATTAAGGACATTTCCTCAGTCCCTTCCCATATGTGGCACAGTCTTGATTGATCAGGTATCTGTTTTTGTGCTAGGCTTGTACTTATGTGATGTATTTGCCAACTTCCTCAGTGAAGAGGGTGTCTCTAATTATCTAGAGTACTGGTTTGGATTCAAAACACTTGAGAGAACACCCTTCAGTTGGAAGTATGGGGTGTTGGGAAAGTCCAGTAGGTTGATATTTAGAGCCACTAGTGTTGATCAGAAGGAGAAAACGGAAAAATTAAAGCAGGAGCTACTAAGGGAACATGTATACATGCTTGCTCATATCATTGAGTTTCAGTCGGCTATATTCTCTAGTAATAGCCAAGCTCATTGCGTCACTAACCCATACATGTCTGGAGGATTGCTGTTAATTAGTTTGGGTCTGCCAATTGAAATGCTGGAAAAGTACAATGAAGCTATCTATTTACTGAAAAGGCTGCTGAATTGTTTTGCTCGTGACGGTAGAAGAGGATACTGGACACTAAGGTTATCAATTGATTTGGAGCACATGTGCTATCTGAATGAGAGCCTTTTGGTTGCTGAAAATGGGTTACTAGATGAATGGGTGCGTGCTGGTTCAAGAGTGGCACTTCAAAGGAGAGTCCTTCGCTTGGGAAAACCACCGAGGCGATGGAAAACTCCTAGTTTTGCAGAGTCTGTCAAGAGGAAGATCATGGAGGTCAATGTTCAAGGGAGACCTCTAAATTGTGCAATAGGCACGAAGAGCAGGTTTTATGGAGAAGATGGGGAGCAATGTGGTGTAGAGCAGCTAGCTCTGCAGTATTACGCCGAGGAAGGTGGATGGCAGGGTGTTCATACAGAGAGTGGCATTTGGTTGACTATTTTTGGACTTCTTATGTGGGATATTATATTTTCCAATACTGCTCCCTTGGATTTAGAGACTGAGAGCTTTTATCTAGTGAGAAAGAACCAAATCGAGTCTCACCTACAGAAAATTCATGATGGCATGGCTGAGGAGATTCTCATCACTTCATGGGAGCTACATGAGGGAACGGCGTGTAGAGGAGTTAACTGGGGGCAACATTCCCTCTCTGAGCTTCGGGCAGCTGTTACATGCATTGGTGGCCCTTGTGTGGCTGCATTTTGTCGACATCTTGCACAAGATTATCGTAGTTGGTCAAGTGGAATGCCAGATTTACTTCTGTGGCGCTGTCATGGGAAATACAGAGGTGAAGCGAAGCTTGTCGAAGTTAAAGGCCCCAGGGATAGACTCTCTGAACAGCAGCGAGCATGGCTATTGCTTTTAATGGATTGTGGATTCAATGCCGAGGATTGGCAAGTACTTGACTGGCAAGCTTTCACCTTGAAGATGGTTTCCCAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000280 GO:0003674 GO:0003676 GO:0003677 GO:0003824 GO:0004518 GO:0004519 GO:0004520 GO:0004527 GO:0004536 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006281 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007049 GO:0007059 GO:0007127 GO:0007129 GO:0008150 GO:0008152 GO:0008409 GO:0009987 GO:0016043 GO:0016787 GO:0016788 GO:0016888 GO:0016893 GO:0017108 GO:0022402 GO:0022414 GO:0033554 GO:0034641 GO:0036297 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0045132 GO:0045143 GO:0046483 GO:0048256 GO:0048285 GO:0050896 GO:0051276 GO:0051321 GO:0051716 GO:0061982 GO:0070192 GO:0070336 GO:0071704 GO:0071840 GO:0090304 GO:0090305 GO:0097159 GO:0098813 GO:0140013 GO:0140097 GO:1901360 GO:1901363 GO:1903046

KEGG Pathways

Metabolic & Signaling

ko03460 map03460

Pfam Domains

Protein Families

HIRAN VRR_NUC

Protein Analysis

1126

Amino Acids

127.38

Weight (kDa)

5.53

Isoelectric Point (pI)

43.26

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HIRAN	PF08797	191 - 271	5e-13	HIRAN domain
FAN1_HTH	PF21315	322 - 400	3e-17	FAN1, HTH domain
VRR_NUC	PF08774	1000 - 1110	1.5e-32	VRR-NUC domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002964)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G48360 AT1G48360 AT1G48360 AT1G48360 AT1G48360 AT1G48360
fragaria_vesca	FvH4_4g12370 FvH4_4g12370 FvH4_4g12370 FvH4_4g12370 FvH4_4g12370 FvH4_4g12370 FvH4_4g12370 FvH4_4g12370
malus_domestica	MD00G1163900.v1.1 MD09G1250200.v1.1 MD09G1250400.v1.1
prunus_persica	Prupe.1G176700_v2.0.a1 Prupe.1G176700_v2.0.a1 Prupe.1G176700_v2.0.a1 Prupe.1G176700_v2.0.a1 Prupe.1G176700_v2.0.a1
pyrus_communis	pycom04g02280 pycom13g29380
rosa_chinensis	RchiOBHm_Chr4g0410481
rosa_laevigata	RLG00000008424
rosa_multiflora	Rmu_sc0001969.1_g000008 Rmu_sc0016181.1_g000004
rosa_roxburghii	Rroxscaffold_5G00355290
rosa_rugosa	Rorug04G0114400
rosa_samantha	Rh4AG160900 Rh4BG160300 Rh4CG173100 Rh4DG156400
rosa_wichuraiana	Rw0G014390 Rw0G014400 Rw4G013420 Rw4G037760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	585, 2754
AccB1I	GGYRCC	1 cut(s)	520
AccI	GTMKAC	3 cut(s)	1770, 2304, 3145
AccIII	TCCGGA	1 cut(s)	485
AciI	CCGC	4 cut(s)	81, 518, 592, 947
AcoI	YGGCCR	1 cut(s)	589
AcsI	RAATTY	7 cut(s)	339, 346, 781, 1039, 1566, 1794, 2991
AcuI	CTGAAG	1 cut(s)	2173
AcyI	GRCGYC	1 cut(s)	521
AfaI	GTAC	5 cut(s)	1152, 2093, 2153, 2444, 3339
AfiI	CCNNNNNNNGG	8 cut(s)	34, 1422, 1452, 2045, 2193, 2647, 3130, 3330
AflII	CTTAAG	1 cut(s)	1298
AflIII	ACRYGT	4 cut(s)	1831, 2299, 2385, 2544
AhlI	ACTAGT	1 cut(s)	2243
AjiI	CACGTC	1 cut(s)	426
AjnI	CCWGG	2 cut(s)	144, 3257
AleI	CACNNNNGTG	1 cut(s)	185
Alw21I	GWGCWC	1 cut(s)	2544
Alw26I	GTCTC	8 cut(s)	759, 1181, 1561, 1838, 2140, 2725, 2930, 2982
AlwNI	CAGNNNCTG	1 cut(s)	2693
Ama87I	CYCGRG	1 cut(s)	1578
Aor13HI	TCCGGA	1 cut(s)	485
AoxI	GGCC	5 cut(s)	589, 1111, 1318, 3121, 3253
ApeKI	GCWGC	8 cut(s)	213, 392, 1972, 2473, 2803, 3101, 3134, 3280
ApoI	RAATTY	7 cut(s)	339, 346, 781, 1039, 1566, 1794, 2991
ArsI	GACNNNNNNTTYG	2 cut(s)	1427, 1459
Asp700I	GAANNNNTTC	1 cut(s)	1009
AspLEI	GCGC	4 cut(s)	51, 303, 523, 3207
AspS9I	GGNCC	4 cut(s)	766, 1112, 3122, 3254
AsuHPI	GGTGA	8 cut(s)	577, 614, 1004, 1007, 1496, 2972, 3239, 3349
AsuNHI	GCTAGC	2 cut(s)	739, 2806
AvaI	CYCGRG	1 cut(s)	1578
AvaII	GGWCC	1 cut(s)	766
BaeGI	GKGCMC	2 cut(s)	232, 1379
BamHI	GGATCC	3 cut(s)	667, 1156, 1412
BanI	GGYRCC	1 cut(s)	520
BanII	GRGCYC	1 cut(s)	194
BauI	CACGAG	2 cut(s)	137, 2490
BbsI	GAAGAC	1 cut(s)	1347
Bbv12I	GWGCWC	1 cut(s)	2544
BbvCI	CCTCAGC	1 cut(s)	3009
BbvI	GCAGC	8 cut(s)	225, 404, 1959, 2460, 2815, 3113, 3121, 3292
BccI	CCATC	9 cut(s)	251, 490, 757, 1637, 2661, 2774, 2832, 2993, 3361
BceAI	ACGGC	1 cut(s)	3066
BciT130I	CCWGG	2 cut(s)	146, 3259
BciVI	GTATCC	2 cut(s)	1545, 2501
BclI	TGATCA	2 cut(s)	2062, 2251
BcoDI	GTCTC	8 cut(s)	759, 1181, 1561, 1838, 2140, 2725, 2930, 2982
BcuI	ACTAGT	1 cut(s)	2243
BfmI	CTRYAG	3 cut(s)	390, 2813, 2984
BfoI	RGCGCY	3 cut(s)	52, 524, 3208
BfrI	CTTAAG	1 cut(s)	1298
BfuAI	ACCTGC	2 cut(s)	585, 2754
BfuI	GTATCC	2 cut(s)	1545, 2501
BglII	AGATCT	1 cut(s)	510
BlpI	GCTNAGC	1 cut(s)	915
BmcAI	AGTACT	3 cut(s)	1152, 2153, 3339
Bme1390I	CCNGG	2 cut(s)	146, 3259
Bme18I	GGWCC	1 cut(s)	766
BmeT110I	CYCGRG	1 cut(s)	1578
BmgBI	CACGTC	1 cut(s)	426
BmgT120I	GGNCC	4 cut(s)	766, 1112, 3122, 3254
BmiI	GGNNCC	7 cut(s)	280, 522, 669, 1158, 1414, 1737, 3256
BmrFI	CCNGG	2 cut(s)	146, 3259
BmrI	ACTGGG	4 cut(s)	323, 945, 3079, 3370
BmsI	GCATC	6 cut(s)	409, 695, 782, 1208, 1302, 1352
BmtI	GCTAGC	2 cut(s)	743, 2810
BmuI	ACTGGG	4 cut(s)	323, 945, 3079, 3370
BoxI	GACNNNNGTC	1 cut(s)	459
BpiI	GAAGAC	1 cut(s)	1347
BplI	GAGNNNNNCTC	4 cut(s)	898, 930, 2120, 2152
BpmI	CTGGAG	1 cut(s)	2412
Bpu10I	CCTNAGC	1 cut(s)	3009
Bpu1102I	GCTNAGC	1 cut(s)	915
BpuEI	CTTGAG	4 cut(s)	43, 628, 1826, 2195
Bsa29I	ATCGAT	1 cut(s)	120
BsaAI	YACGTR	1 cut(s)	1280
BsaBI	GATNNNNATC	3 cut(s)	618, 1989, 3020
BsaHI	GRCGYC	1 cut(s)	521
BsaI	GGTCTC	1 cut(s)	2725
BsaJI	CCNNGG	8 cut(s)	144, 1115, 2660, 2826, 2925, 3257, 3258, 3324
BsaWI	WCCGGW	1 cut(s)	485
BsaXI	ACNNNNNCTCC	2 cut(s)	2531, 2561
Bsc4I	CCNNNNNNNGG	8 cut(s)	34, 1422, 1452, 2045, 2193, 2647, 3130, 3330
Bse118I	RCCGGY	1 cut(s)	45
Bse3DI	GCAATG	3 cut(s)	1338, 2365, 2795
Bse8I	GATNNNNATC	3 cut(s)	618, 1989, 3020
BseAI	TCCGGA	1 cut(s)	485
BseBI	CCWGG	2 cut(s)	146, 3259
BseCI	ATCGAT	1 cut(s)	120
BseDI	CCNNGG	8 cut(s)	144, 1115, 2660, 2826, 2925, 3257, 3258, 3324
BseGI	GGATG	6 cut(s)	265, 482, 710, 797, 1293, 2843
BseJI	GATNNNNATC	3 cut(s)	618, 1989, 3020
BseLI	CCNNNNNNNGG	8 cut(s)	34, 1422, 1452, 2045, 2193, 2647, 3130, 3330
BseMI	GCAATG	3 cut(s)	1338, 2365, 2795
BseRI	GAGGAG	4 cut(s)	65, 747, 3026, 3075
BseSI	GKGCMC	2 cut(s)	232, 1379
BseXI	GCAGC	8 cut(s)	225, 404, 1959, 2460, 2815, 3113, 3121, 3292
BseYI	CCCAGC	1 cut(s)	297
BsgI	GTGCAG	1 cut(s)	1812
BshFI	GGCC	5 cut(s)	591, 1113, 1320, 3123, 3255
BshNI	GGYRCC	1 cut(s)	520
BshVI	ATCGAT	1 cut(s)	120
BsiHKAI	GWGCWC	1 cut(s)	2544
BsiHKCI	CYCGRG	1 cut(s)	1578
BsiSI	CCGG	2 cut(s)	46, 486
BslFI	GGGAC	5 cut(s)	127, 815, 884, 1429, 2017
BslI	CCNNNNNNNGG	8 cut(s)	34, 1422, 1452, 2045, 2193, 2647, 3130, 3330
BsmAI	GTCTC	8 cut(s)	759, 1181, 1561, 1838, 2140, 2725, 2930, 2982
BsmFI	GGGAC	5 cut(s)	127, 815, 884, 1429, 2017
BsmI	GAATGC	3 cut(s)	633, 814, 3189
BsnI	GGCC	5 cut(s)	591, 1113, 1320, 3123, 3255
Bso31I	GGTCTC	1 cut(s)	2725
BsoBI	CYCGRG	1 cut(s)	1578
Bsp1286I	GDGCHC	4 cut(s)	194, 232, 1379, 2544
Bsp13I	TCCGGA	1 cut(s)	485
Bsp1720I	GCTNAGC	1 cut(s)	915
Bsp19I	CCATGG	1 cut(s)	1115
BspACI	CCGC	4 cut(s)	81, 518, 592, 947
BspANI	GGCC	5 cut(s)	591, 1113, 1320, 3123, 3255
BspDI	ATCGAT	1 cut(s)	120
BspEI	TCCGGA	1 cut(s)	485
BspHI	TCATGA	2 cut(s)	397, 2995
BspLI	GGNNCC	7 cut(s)	280, 522, 669, 1158, 1414, 1737, 3256
BspMAI	CTGCAG	2 cut(s)	394, 2817
BspMI	ACCTGC	2 cut(s)	585, 2754
BspOI	GCTAGC	2 cut(s)	743, 2810
BspQI	GCTCTTC	2 cut(s)	160, 2753
BspT107I	GGYRCC	1 cut(s)	520
BspTI	CTTAAG	1 cut(s)	1298
BspTNI	GGTCTC	1 cut(s)	2725
BsrDI	GCAATG	3 cut(s)	1338, 2365, 2795
BsrFI	RCCGGY	1 cut(s)	45
BssAI	RCCGGY	1 cut(s)	45
BssECI	CCNNGG	8 cut(s)	144, 1115, 2660, 2826, 2925, 3257, 3258, 3324
BssNAI	GTATAC	1 cut(s)	2305
BssNI	GRCGYC	1 cut(s)	521
BssSI	CACGAG	2 cut(s)	137, 2490
BssT1I	CCWWGG	2 cut(s)	1115, 2925
Bst1107I	GTATAC	1 cut(s)	2305
Bst2BI	CACGAG	2 cut(s)	137, 2490
Bst2UI	CCWGG	2 cut(s)	146, 3259
Bst4CI	ACNGT	7 cut(s)	184, 479, 541, 1010, 1267, 2053, 2498
Bst6I	CTCTTC	7 cut(s)	7, 160, 501, 1596, 2121, 2497, 2753
BstACI	GRCGYC	1 cut(s)	521
BstAFI	CTTAAG	1 cut(s)	1298
BstBAI	YACGTR	1 cut(s)	1280
BstDSI	CCRYGG	1 cut(s)	1115
BstENI	CCTNNNNNAGG	1 cut(s)	1420
BstF5I	GGATG	6 cut(s)	265, 482, 710, 797, 1293, 2843
BstH2I	RGCGCY	3 cut(s)	52, 524, 3208
BstHHI	GCGC	4 cut(s)	51, 303, 523, 3207
BstMAI	GTCTC	8 cut(s)	759, 1181, 1561, 1838, 2140, 2725, 2930, 2982
BstMWI	GCNNNNNNNGC	7 cut(s)	210, 298, 1317, 2760, 2812, 3120, 3289
BstNI	CCWGG	2 cut(s)	146, 3259
BstNSI	RCATGY	5 cut(s)	2303, 2311, 2389, 2548, 3114
BstPAI	GACNNNNGTC	1 cut(s)	459
BstSCI	CCNGG	2 cut(s)	144, 3257
BstSFI	CTRYAG	3 cut(s)	390, 2813, 2984
BstSLI	GKGCMC	2 cut(s)	232, 1379
BstV1I	GCAGC	8 cut(s)	225, 404, 1959, 2460, 2815, 3113, 3121, 3292
BstV2I	GAAGAC	1 cut(s)	1347
BstX2I	RGATCY	7 cut(s)	510, 649, 667, 1156, 1333, 1412, 1492
BstXI	CCANNNNNNTGG	1 cut(s)	1883
BstYI	RGATCY	7 cut(s)	510, 649, 667, 1156, 1333, 1412, 1492
BstZ17I	GTATAC	1 cut(s)	2305
Bsu15I	ATCGAT	1 cut(s)	120
BsuI	GTATCC	2 cut(s)	1545, 2501
BsuRI	GGCC	5 cut(s)	591, 1113, 1320, 3123, 3255
BsuTUI	ATCGAT	1 cut(s)	120
BtgI	CCRYGG	1 cut(s)	1115
BtgZI	GCGATG	1 cut(s)	2680
BtrI	CACGTC	1 cut(s)	426
BtsCI	GGATG	6 cut(s)	265, 482, 710, 797, 1293, 2843
BtsI	GCAGTG	3 cut(s)	1176, 1824, 1854
BveI	ACCTGC	2 cut(s)	585, 2754
CaiI	CAGNNNCTG	1 cut(s)	2693
CciI	TCATGA	2 cut(s)	397, 2995
CfoI	GCGC	4 cut(s)	51, 303, 523, 3207
Cfr10I	RCCGGY	1 cut(s)	45
Cfr13I	GGNCC	4 cut(s)	766, 1112, 3122, 3254
ClaI	ATCGAT	1 cut(s)	120
CseI	GACGC	2 cut(s)	205, 2359
Csp6I	GTAC	5 cut(s)	1151, 2092, 2152, 2443, 3338
CspCI	CAANNNNNGTGG	2 cut(s)	2230, 2265
CviQI	GTAC	5 cut(s)	1151, 2092, 2152, 2443, 3338
DinI	GGCGCC	1 cut(s)	522
EaeI	YGGCCR	1 cut(s)	589
Eam1104I	CTCTTC	7 cut(s)	7, 160, 501, 1596, 2121, 2497, 2753
EarI	CTCTTC	7 cut(s)	7, 160, 501, 1596, 2121, 2497, 2753
EciI	GGCGGA	2 cut(s)	70, 936
Eco130I	CCWWGG	2 cut(s)	1115, 2925
Eco24I	GRGCYC	1 cut(s)	194
Eco31I	GGTCTC	1 cut(s)	2725
Eco32I	GATATC	2 cut(s)	1428, 1959
Eco47I	GGWCC	1 cut(s)	766
Eco57I	CTGAAG	1 cut(s)	2173
Eco88I	CYCGRG	1 cut(s)	1578
EcoNI	CCTNNNNNAGG	1 cut(s)	1420
EcoO109I	RGGNCCY	1 cut(s)	3254
EcoRII	CCWGG	2 cut(s)	144, 3257
EcoRV	GATATC	2 cut(s)	1428, 1959
EcoT14I	CCWWGG	2 cut(s)	1115, 2925
EcoT22I	ATGCAT	3 cut(s)	797, 1201, 3116
EcoT38I	GRGCYC	1 cut(s)	194
EgeI	GGCGCC	1 cut(s)	522
EheI	GGCGCC	1 cut(s)	522
ErhI	CCWWGG	2 cut(s)	1115, 2925
FalI	AAGNNNNNCTT	2 cut(s)	3222, 3254
FaqI	GGGAC	5 cut(s)	127, 815, 884, 1429, 2017
FauNDI	CATATG	2 cut(s)	1878, 2042
FbaI	TGATCA	2 cut(s)	2062, 2251
FblI	GTMKAC	3 cut(s)	1770, 2304, 3145
FokI	GGATG	6 cut(s)	272, 469, 717, 804, 1280, 2850
FriOI	GRGCYC	1 cut(s)	194
GlaI	GCGC	4 cut(s)	50, 302, 522, 3206
GsaI	CCCAGC	1 cut(s)	301
GsuI	CTGGAG	1 cut(s)	2412
HaeII	RGCGCY	3 cut(s)	52, 524, 3208
HaeIII	GGCC	5 cut(s)	591, 1113, 1320, 3123, 3255
HapII	CCGG	2 cut(s)	46, 486
HgaI	GACGC	2 cut(s)	205, 2359
HhaI	GCGC	4 cut(s)	51, 303, 523, 3207
Hin1I	GRCGYC	1 cut(s)	521
Hin6I	GCGC	4 cut(s)	49, 301, 521, 3205
HinP1I	GCGC	4 cut(s)	49, 301, 521, 3205
HincII	GTYRAC	5 cut(s)	454, 475, 2874, 3067, 3146
HindII	GTYRAC	5 cut(s)	454, 475, 2874, 3067, 3146
HindIII	AAGCTT	3 cut(s)	19, 3236, 3351
HpaI	GTTAAC	1 cut(s)	3067
HpaII	CCGG	2 cut(s)	46, 486
HphI	GGTGA	8 cut(s)	577, 614, 1004, 1007, 1496, 2972, 3239, 3349
Hpy166II	GTNNAC	9 cut(s)	454, 475, 1056, 1487, 1771, 2305, 2874, 3067, 3146
Hpy8I	GTNNAC	9 cut(s)	454, 475, 1056, 1487, 1771, 2305, 2874, 3067, 3146
Hpy99I	CGWCG	1 cut(s)	427
HpyAV	CCTTC	7 cut(s)	65, 143, 2045, 2197, 2251, 2651, 2825
HpyCH4III	ACNGT	7 cut(s)	184, 479, 541, 1010, 1267, 2053, 2498
HpyCH4IV	ACGT	3 cut(s)	425, 1279, 1833
HpyF10VI	GCNNNNNNNGC	7 cut(s)	210, 298, 1317, 2760, 2812, 3120, 3289
HpySE526I	ACGT	3 cut(s)	425, 1279, 1833
Hsp92I	GRCGYC	1 cut(s)	521
HspAI	GCGC	4 cut(s)	49, 301, 521, 3205
KasI	GGCGCC	1 cut(s)	520
Kpn2I	TCCGGA	1 cut(s)	485
KroI	GCCGGC	1 cut(s)	45
KroNI	GCCGGC	1 cut(s)	47
Ksp22I	TGATCA	2 cut(s)	2062, 2251
KspAI	GTTAAC	1 cut(s)	3067
LguI	GCTCTTC	2 cut(s)	160, 2753
LmnI	GCTCC	6 cut(s)	1741, 2284, 2539, 2785, 2926, 3034
Lsp1109I	GCAGC	8 cut(s)	225, 404, 1959, 2460, 2815, 3113, 3121, 3292
LweI	GCATC	6 cut(s)	409, 695, 782, 1208, 1302, 1352
MaeII	ACGT	3 cut(s)	425, 1279, 1833
MfeI	CAATTG	2 cut(s)	2424, 2529
MflI	RGATCY	7 cut(s)	510, 649, 667, 1156, 1333, 1412, 1492
MhlI	GDGCHC	4 cut(s)	194, 232, 1379, 2544
Mly113I	GGCGCC	1 cut(s)	521
MlyI	GAGTC	9 cut(s)	353, 415, 1058, 1451, 1830, 2646, 2699, 2984, 3261
MmeI	TCCRAC	2 cut(s)	1562, 2174
Mph1103I	ATGCAT	3 cut(s)	797, 1201, 3116
MreI	CGCCGGCG	1 cut(s)	45
MroI	TCCGGA	1 cut(s)	485
MroNI	GCCGGC	1 cut(s)	45
MroXI	GAANNNNTTC	1 cut(s)	1009
MslI	CAYNNNNRTG	3 cut(s)	185, 258, 1881
MspA1I	CMGCKG	1 cut(s)	3104
MspCI	CTTAAG	1 cut(s)	1298
MspI	CCGG	2 cut(s)	46, 486
MspR9I	CCNGG	2 cut(s)	146, 3259
MunI	CAATTG	2 cut(s)	2424, 2529
Mva1269I	GAATGC	3 cut(s)	633, 814, 3189
MvaI	CCWGG	2 cut(s)	146, 3259
MwoI	GCNNNNNNNGC	7 cut(s)	210, 298, 1317, 2760, 2812, 3120, 3289
NaeI	GCCGGC	1 cut(s)	47
NarI	GGCGCC	1 cut(s)	521
NcoI	CCATGG	1 cut(s)	1115
NdeI	CATATG	2 cut(s)	1878, 2042
NgoMIV	GCCGGC	1 cut(s)	45
NheI	GCTAGC	2 cut(s)	739, 2806
NlaIV	GGNNCC	7 cut(s)	280, 522, 669, 1158, 1414, 1737, 3256
NmeAIII	GCCGAG	3 cut(s)	1478, 2851, 3349
NmuCI	GTSAC	7 cut(s)	356, 535, 541, 848, 1822, 2371, 2492
NsiI	ATGCAT	3 cut(s)	797, 1201, 3116
NspI	RCATGY	5 cut(s)	2303, 2311, 2389, 2548, 3114
OliI	CACNNNNGTG	1 cut(s)	185
PaeR7I	CTCGAG	1 cut(s)	1578
PagI	TCATGA	2 cut(s)	397, 2995
PasI	CCCWGGG	1 cut(s)	3258
PciI	ACATGT	3 cut(s)	2299, 2385, 2544
PciSI	GCTCTTC	2 cut(s)	160, 2753
PctI	GAATGC	3 cut(s)	633, 814, 3189
PdiI	GCCGGC	1 cut(s)	47
PdmI	GAANNNNTTC	1 cut(s)	1009
PleI	GAGTC	9 cut(s)	353, 414, 1057, 1450, 1829, 2645, 2698, 2983, 3261
PluTI	GGCGCC	1 cut(s)	524
PpsI	GAGTC	9 cut(s)	353, 414, 1057, 1450, 1829, 2645, 2698, 2983, 3261
Ppu21I	YACGTR	1 cut(s)	1280
PscI	ACATGT	3 cut(s)	2299, 2385, 2544
PshAI	GACNNNNGTC	1 cut(s)	459
Psp6I	CCWGG	2 cut(s)	144, 3257
PspFI	CCCAGC	1 cut(s)	297
PspGI	CCWGG	2 cut(s)	144, 3257
PspN4I	GGNNCC	7 cut(s)	280, 522, 669, 1158, 1414, 1737, 3256
PspPI	GGNCC	4 cut(s)	766, 1112, 3122, 3254
PstI	CTGCAG	2 cut(s)	394, 2817
PstNI	CAGNNNCTG	1 cut(s)	2693
PsuI	RGATCY	7 cut(s)	510, 649, 667, 1156, 1333, 1412, 1492
PvuII	CAGCTG	1 cut(s)	3104
RsaI	GTAC	5 cut(s)	1152, 2093, 2153, 2444, 3339
RsaNI	GTAC	5 cut(s)	1151, 2092, 2152, 2443, 3338
RseI	CAYNNNNRTG	3 cut(s)	185, 258, 1881
SalI	GTCGAC	1 cut(s)	3144
SapI	GCTCTTC	2 cut(s)	160, 2753
Sau96I	GGNCC	4 cut(s)	766, 1112, 3122, 3254
ScaI	AGTACT	3 cut(s)	1152, 2153, 3339
SchI	GAGTC	9 cut(s)	353, 415, 1058, 1451, 1830, 2646, 2699, 2984, 3261
ScrFI	CCNGG	2 cut(s)	146, 3259
SduI	GDGCHC	4 cut(s)	194, 232, 1379, 2544
SfaNI	GCATC	6 cut(s)	409, 695, 782, 1208, 1302, 1352
SfcI	CTRYAG	3 cut(s)	390, 2813, 2984
SfoI	GGCGCC	1 cut(s)	522
Sfr274I	CTCGAG	1 cut(s)	1578
SgrAI	CRCCGGYG	1 cut(s)	45
SinI	GGWCC	1 cut(s)	766
SlaI	CTCGAG	1 cut(s)	1578
SmiMI	CAYNNNNRTG	3 cut(s)	185, 258, 1881
SmlI	CTYRAG	6 cut(s)	22, 643, 1298, 1578, 1805, 2174
SmoI	CTYRAG	6 cut(s)	22, 643, 1298, 1578, 1805, 2174
SpeI	ACTAGT	1 cut(s)	2243
SsiI	CCGC	4 cut(s)	81, 518, 592, 947
SspDI	GGCGCC	1 cut(s)	520
StyD4I	CCNGG	2 cut(s)	144, 3257
StyI	CCWWGG	2 cut(s)	1115, 2925
TaaI	ACNGT	7 cut(s)	184, 479, 541, 1010, 1267, 2053, 2498
TaiI	ACGT	3 cut(s)	428, 1282, 1836
TaqI	TCGA	7 cut(s)	120, 335, 1047, 1579, 2973, 3145, 3243
TatI	WGTACW	5 cut(s)	1150, 2091, 2151, 2442, 3337
TauI	GCSGC	2 cut(s)	521, 594
TseFI	GTSAC	7 cut(s)	356, 535, 541, 848, 1822, 2371, 2492
TseI	GCWGC	8 cut(s)	213, 392, 1972, 2473, 2803, 3101, 3134, 3280
Tsp45I	GTSAC	7 cut(s)	356, 535, 541, 848, 1822, 2371, 2492
TspGWI	ACGGA	2 cut(s)	1120, 2282
Vha464I	CTTAAG	1 cut(s)	1298
VpaK11BI	GGWCC	1 cut(s)	766
XagI	CCTNNNNNAGG	1 cut(s)	1420
XapI	RAATTY	7 cut(s)	339, 346, 781, 1039, 1566, 1794, 2991
XbaI	TCTAGA	2 cut(s)	272, 2146
XceI	RCATGY	5 cut(s)	2303, 2311, 2389, 2548, 3114
XcmI	CCANNNNNNNNNTGG	1 cut(s)	2664
XhoI	CTCGAG	1 cut(s)	1578
XmiI	GTMKAC	3 cut(s)	1770, 2304, 3145
XmnI	GAANNNNTTC	1 cut(s)	1009
ZrmI	AGTACT	3 cut(s)	1152, 2153, 3339
Zsp2I	ATGCAT	3 cut(s)	797, 1201, 3116

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.