Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0002964

Physical Location & Seq

Genomic Coordinates Reverse (-)

34221434 .. 34230527

Gene Structure 9094 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ38139

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2709 bp

ATGCTAAAGGGAAGAGAAAGCTTGAGCCGATTGGTGGGCAAACGCAGGCGCTTCCTTCCCAATCGTCATTCACTCCTCTCCGCCCCTACCACCACCCAGAGCTTATTGAATCTGGATATCGATCCAAATGGCACACTCGTGTCCCCGGAAGGCTCTTCAAATCAAGACGAACAAGAAAACACACTGGCGGGCTCTGTTGCTTGCCCTGTTTGCAGCGTCAAACTCAGCGCCCAAAACAACACCATCAATTCTCATCTGGATGAGTGTCTATCTAGAGGAACCAAACGAAAGCTAACCCAGCGCACACTTCTAGAGCTCAACTTCTGCCCAGTGTCGAAGATTCAAAATTTTTCCTGTGACTCTAAACAGTTTGGAAATGATTTGTTTCCTGCAGCTCGGGATGAAAGTCGAAATCAGGTTGACAGTCCATCCAGAGACCCAATCAATAAGGACGAGATCAGTGAGGTGCCAGATTTTGATGTGACCATCACTCAGGACGACATATATGGGGTGATTCTTGAAACTTTTATTGTTGGCCGCAGGTTTGGTGATGGAACTGAGTTATATCTTGGTGCAAGCATTTATCTCTCAAGAGATCCTGATAATGTTAAGGATCCTAATGCTATCAAGGTTGTTTATTCAGATTCGGGATGCCTTAAAATGCTTGGCTTTCTCCCTCGCAAGCTAGCTGAGTATTTGTCTCCTCTGATAGACCAGTATAGTCTAAATTTTGAGGGATGCGTTACCTCTATTCCCAAGCGTTCTATTGATGTTGTCCCAATACAGATAGTGTGTCACAAGACCAGTGATAATAAGGACTTTAATGATGACAAGGTTTTCAAATGTTTATGGAGAAATGCTCAGCAAGTAATTGAATCTACAAAGTCCTGTCCGCCCAGTGCAATAAAATATCAGGATAACTTTTGTGTTTTCATACGTGAGGTTTTGAGAAACAGTTCTCACCTCTTGACAGATGATGAAAAGAATTTCATCGAGTCATTTACTTCGATGTCAGATGATAGTCAGAGGCTATTTGTTCGGCTTTATACACGGAAAGGCCCATGGTTTCGGCTGTCTGCTATTTCATACCCAGAAGTACTGGATCCCCAACAAGCAGTGAAAGAGCTATCTGAGACAGGGTATGCATCTTGCTTTGAAATTATAAATAAACTATCTGATGATTGTATTAAGGAGATTTTGGATTTGCTCACTGTATCTGAGCTACGTGAAATCTTGTGCATCCTTAAGCAGGGTTGCAATCGTGGCCTAAGAAAGCAGGATCTCATTGCATCTCTTATATCTTCTTACGATGAAGATTTGTGCCCATTACTACCTAGTATGGTTTTGCACAGAACAGGATCCTGTGTTAGGATATCTTCAAATGCGGAGTCCCTTATCTGGCGTGCTGAGAGGCTTTTCTTCCTGAATGGTGAACAGGATCTCTCGGCATTTCTACTGGTGGATTTGGGAATAGTCAAGTATCCAACTTACAAGTGCATAGTCTCACAACAAATTTTCTCTGCTCGAGATGATTTGCTTGGTTATGAAGAGGCTATTGAAGTGGCACAAATAGTTGATGAAGCTCTTGATGGAAGCAACACTGGATTGGTCTTAAAGTGCATAAAGATAGCTGATTCCCATTTATCCAATCCGGTTCAATCCTTGACCTCTGAATCAATGGCTCCATTCCTTTCCCACTTTTCAGCTACATTTGTCAACTCAAAAGTGGTTTTACTAGGAATTTCTTTTCTTGAGCGTGAGCATAGGTACAATGATGCTATCTATTTACTGAAAAGGCTGCTGAATTGTTTCGCTCGTGATGGTAGAAGAGGATACTGGACACTACGGTTATCAATTGATTTGGAGCACATGGGCTATCTGAATGAGAGCCTTTTGGTTGCTGAAAATGGGTTACTAGATGAATGGGTGCGTGCTGGTTCAAGAGTGGCACTTCAAAGGAGAGTCCTTCGCTTGGGAAAACCACCGAGGCGATGGAAAACTCCTAGTTTTGCAGAGTCTGTCAAGAGGAAGATCATGGAGGTAAATGTTCCGGGGAGACCTTTAAATTGTGCAATTGGCACAAAGAGCAGGTTTTATGGAGAAGATGGGGAGCAATGCGGTGTAGAGCAGCTAGCTCTGCAATATTATGCCGAGGAAGGTGGATGGCAGGGTGTTCATACAGAGAGTGGCATTTGGTTGACTATTTTTGGACTTCTTATGTGGGATATTATATTTTCCAATGTACCAAATGTCTTCCGCACCAGATTTCAGACTGCTCCCTTGGATTTAGAGACTGATAGCTTTTATCTAGTGAGAAAGAACCATATCGAGTCTCACCTACAGAAAATTCTTGATGGCATGGCTGAAGAGATTCTCATCACTTCATGGGAGTTACATGAGGGAACAGCATGTCGAGGAGTTAACTGGGGGCGACATTCCCTCTCTGAGCTTCGGGCAGCTGTTACATGCATCGGTGGCCCATGTGTGGCTGCATTTTGTCGACATCTTGCACAAGATTATCGTAGTTGGTCAAGTGGAATGCCAGATTTACTTCTGTGGCGCTTCCATGGGAAATACAGAGGTGAAGCGAAGCTTGTTGAAGTTAAAGGCCCCAGGGATAGACTCTCTGAACAGCAGCGAGCATGGCTATTGCTTTTAATGGATTGTGGGTTCAATGCTGAGGTCTGTAAAGTGAGCCCTATTGTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000280 GO:0003674 GO:0003676 GO:0003677 GO:0003824 GO:0004518 GO:0004519 GO:0004520 GO:0004527 GO:0004536 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006281 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007049 GO:0007059 GO:0007127 GO:0007129 GO:0008150 GO:0008152 GO:0008409 GO:0009987 GO:0016043 GO:0016787 GO:0016788 GO:0016888 GO:0016893 GO:0017108 GO:0022402 GO:0022414 GO:0033554 GO:0034641 GO:0036297 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0045132 GO:0045143 GO:0046483 GO:0048256 GO:0048285 GO:0050896 GO:0051276 GO:0051321 GO:0051716 GO:0061982 GO:0070192 GO:0070336 GO:0071704 GO:0071840 GO:0090304 GO:0090305 GO:0097159 GO:0098813 GO:0140013 GO:0140097 GO:1901360 GO:1901363 GO:1903046

KEGG Pathways

Metabolic & Signaling

ko03460 map03460

Pfam Domains

Protein Families

HIRAN VRR_NUC

Protein Analysis

902

Amino Acids

101.91

Weight (kDa)

5.99

Isoelectric Point (pI)

45.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HIRAN	PF08797	173 - 254	3.1e-14	HIRAN domain
FAN1_HTH	PF21315	304 - 382	9.8e-18	FAN1, HTH domain
FAN1_TPR	PF21170	511 - 658	3.8e-12	Fanconi-associated nuclease 1, TPR domain
VRR_NUC	PF08774	786 - 899	3.1e-36	VRR-NUC domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002964)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G48360 AT1G48360 AT1G48360 AT1G48360 AT1G48360 AT1G48360
fragaria_vesca	FvH4_4g12370 FvH4_4g12370 FvH4_4g12370 FvH4_4g12370 FvH4_4g12370 FvH4_4g12370 FvH4_4g12370 FvH4_4g12370
malus_domestica	MD00G1163900.v1.1 MD09G1250200.v1.1 MD09G1250400.v1.1
prunus_persica	Prupe.1G176700_v2.0.a1 Prupe.1G176700_v2.0.a1 Prupe.1G176700_v2.0.a1 Prupe.1G176700_v2.0.a1 Prupe.1G176700_v2.0.a1
pyrus_communis	pycom04g02280 pycom13g29380
rosa_chinensis	RchiOBHm_Chr4g0410481
rosa_laevigata	RLG00000008424
rosa_multiflora	Rmu_sc0001969.1_g000008 Rmu_sc0016181.1_g000004
rosa_roxburghii	Rroxscaffold_5G00355290
rosa_rugosa	Rorug04G0114400
rosa_samantha	Rh4AG160900 Rh4BG160300 Rh4CG173100 Rh4DG156400
rosa_wichuraiana	Rw0G014390 Rw0G014400 Rw4G013420 Rw4G037760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1163
Acc36I	ACCTGC	2 cut(s)	531, 2079
AccB1I	GGYRCC	1 cut(s)	466
AccI	GTMKAC	1 cut(s)	2500
AciI	CCGC	7 cut(s)	81, 188, 538, 893, 1385, 2118, 2257
AcoI	YGGCCR	1 cut(s)	535
AcsI	RAATTY	6 cut(s)	346, 727, 985, 1512, 1740, 2346
AcuI	CTGAAG	1 cut(s)	2385
AfaI	GTAC	3 cut(s)	1098, 1769, 2244
AfiI	CCNNNNNNNGG	6 cut(s)	34, 1249, 1368, 1398, 1972, 2485
AflII	CTTAAG	1 cut(s)	1244
AjnI	CCWGG	1 cut(s)	2612
AleI	CACNNNNGTG	1 cut(s)	137
AloI	GAACNNNNNNTCC	2 cut(s)	2654, 2686
Alw21I	GWGCWC	2 cut(s)	318, 1869
Alw26I	GTCTC	7 cut(s)	429, 705, 1127, 1507, 2050, 2285, 2337
AlwNI	CAGNNNCTG	1 cut(s)	2018
Ama87I	CYCGRG	2 cut(s)	396, 1524
AoxI	GGCC	5 cut(s)	535, 1057, 1264, 2476, 2608
ApeKI	GCWGC	7 cut(s)	213, 392, 1798, 2128, 2456, 2489, 2635
ApoI	RAATTY	6 cut(s)	346, 727, 985, 1512, 1740, 2346
ArsI	GACNNNNNNTTYG	2 cut(s)	1373, 1405
Asp700I	GAANNNNTTC	3 cut(s)	955, 1808, 2370
AspLEI	GCGC	4 cut(s)	51, 230, 303, 2562
AspS9I	GGNCC	3 cut(s)	1058, 2477, 2609
AsuC2I	CCSGG	2 cut(s)	146, 2052
AsuHPI	GGTGA	6 cut(s)	523, 560, 953, 1442, 2327, 2594
AsuNHI	GCTAGC	2 cut(s)	685, 2131
AvaI	CYCGRG	2 cut(s)	396, 1524
BaeGI	GKGCMC	1 cut(s)	1325
BamHI	GGATCC	3 cut(s)	613, 1102, 1358
BanI	GGYRCC	1 cut(s)	466
BanII	GRGCYC	3 cut(s)	194, 318, 2699
BauI	CACGAG	2 cut(s)	137, 1815
BbsI	GAAGAC	1 cut(s)	2245
Bbv12I	GWGCWC	2 cut(s)	318, 1869
BbvCI	CCTCAGC	1 cut(s)	2679
BbvI	GCAGC	7 cut(s)	225, 404, 1785, 2140, 2468, 2476, 2647
BciT130I	CCWGG	1 cut(s)	2614
BciVI	GTATCC	2 cut(s)	1491, 1826
BcnI	CCSGG	2 cut(s)	146, 2052
BcoDI	GTCTC	7 cut(s)	429, 705, 1127, 1507, 2050, 2285, 2337
BfaI	CTAG	9 cut(s)	273, 311, 686, 1335, 1736, 1916, 2004, 2132, 2309
BfmI	CTRYAG	2 cut(s)	390, 2339
BfoI	RGCGCY	3 cut(s)	52, 231, 2563
BfrI	CTTAAG	1 cut(s)	1244
BfuAI	ACCTGC	2 cut(s)	531, 2079
BfuI	GTATCC	2 cut(s)	1491, 1826
BisI	GCNGC	8 cut(s)	214, 393, 538, 1799, 2129, 2457, 2490, 2636
BlpI	GCTNAGC	1 cut(s)	861
BlsI	GCNGC	8 cut(s)	215, 394, 539, 1800, 2130, 2458, 2491, 2637
BmcAI	AGTACT	1 cut(s)	1098
Bme1390I	CCNGG	3 cut(s)	146, 2052, 2614
BmeT110I	CYCGRG	2 cut(s)	396, 1524
BmgT120I	GGNCC	3 cut(s)	1058, 2477, 2609
BmiI	GGNNCC	7 cut(s)	280, 468, 615, 1104, 1360, 1683, 2611
BmrFI	CCNGG	3 cut(s)	146, 2052, 2614
BmrI	ACTGGG	3 cut(s)	323, 891, 2434
BmsI	GCATC	7 cut(s)	641, 728, 1154, 1248, 1298, 1765, 2478
BmtI	GCTAGC	2 cut(s)	689, 2135
BmuI	ACTGGG	3 cut(s)	323, 891, 2434
BpiI	GAAGAC	1 cut(s)	2245
BplI	GAGNNNNNCTC	2 cut(s)	844, 876
Bpu10I	CCTNAGC	1 cut(s)	2679
Bpu1102I	GCTNAGC	1 cut(s)	861
BpuEI	CTTGAG	3 cut(s)	43, 574, 1772
BpuMI	CCSGG	2 cut(s)	146, 2052
Bsa29I	ATCGAT	1 cut(s)	120
BsaAI	YACGTR	2 cut(s)	938, 1226
BsaBI	GATNNNNATC	2 cut(s)	120, 2375
BsaI	GGTCTC	2 cut(s)	429, 2050
BsaJI	CCNNGG	9 cut(s)	144, 1061, 1985, 2051, 2151, 2280, 2566, 2612, 2613
BsaWI	WCCGGW	1 cut(s)	1651
Bsc4I	CCNNNNNNNGG	6 cut(s)	34, 1249, 1368, 1398, 1972, 2485
Bse3DI	GCAATG	2 cut(s)	1284, 2120
Bse8I	GATNNNNATC	2 cut(s)	120, 2375
BseBI	CCWGG	1 cut(s)	2614
BseCI	ATCGAT	1 cut(s)	120
BseDI	CCNNGG	9 cut(s)	144, 1061, 1985, 2051, 2151, 2280, 2566, 2612, 2613
BseGI	GGATG	7 cut(s)	265, 406, 428, 656, 743, 1239, 2168
BseJI	GATNNNNATC	2 cut(s)	120, 2375
BseLI	CCNNNNNNNGG	6 cut(s)	34, 1249, 1368, 1398, 1972, 2485
BseMI	GCAATG	2 cut(s)	1284, 2120
BseRI	GAGGAG	3 cut(s)	65, 693, 2430
BseSI	GKGCMC	1 cut(s)	1325
BseXI	GCAGC	7 cut(s)	225, 404, 1785, 2140, 2468, 2476, 2647
BseYI	CCCAGC	1 cut(s)	297
BshFI	GGCC	5 cut(s)	537, 1059, 1266, 2478, 2610
BshNI	GGYRCC	1 cut(s)	466
BshVI	ATCGAT	1 cut(s)	120
BsiHKAI	GWGCWC	2 cut(s)	318, 1869
BsiHKCI	CYCGRG	2 cut(s)	396, 1524
BsiSI	CCGG	3 cut(s)	146, 1652, 2051
BslFI	GGGAC	3 cut(s)	127, 761, 1375
BslI	CCNNNNNNNGG	6 cut(s)	34, 1249, 1368, 1398, 1972, 2485
BsmAI	GTCTC	7 cut(s)	429, 705, 1127, 1507, 2050, 2285, 2337
BsmFI	GGGAC	3 cut(s)	127, 761, 1375
BsmI	GAATGC	1 cut(s)	2544
BsnI	GGCC	5 cut(s)	537, 1059, 1266, 2478, 2610
Bso31I	GGTCTC	2 cut(s)	429, 2050
BsoBI	CYCGRG	2 cut(s)	396, 1524
Bsp1286I	GDGCHC	5 cut(s)	194, 318, 1325, 1869, 2699
Bsp143I	GATC	9 cut(s)	121, 456, 595, 613, 1102, 1279, 1358, 1438, 2031
Bsp1720I	GCTNAGC	1 cut(s)	861
Bsp19I	CCATGG	2 cut(s)	1061, 2566
BspACI	CCGC	7 cut(s)	81, 188, 538, 893, 1385, 2118, 2257
BspANI	GGCC	5 cut(s)	537, 1059, 1266, 2478, 2610
BspDI	ATCGAT	1 cut(s)	120
BspLI	GGNNCC	7 cut(s)	280, 468, 615, 1104, 1360, 1683, 2611
BspMAI	CTGCAG	1 cut(s)	394
BspMI	ACCTGC	2 cut(s)	531, 2079
BspOI	GCTAGC	2 cut(s)	689, 2135
BspQI	GCTCTTC	1 cut(s)	160
BspT107I	GGYRCC	1 cut(s)	466
BspTI	CTTAAG	1 cut(s)	1244
BspTNI	GGTCTC	2 cut(s)	429, 2050
BsrDI	GCAATG	2 cut(s)	1284, 2120
BssECI	CCNNGG	9 cut(s)	144, 1061, 1985, 2051, 2151, 2280, 2566, 2612, 2613
BssMI	GATC	9 cut(s)	121, 456, 595, 613, 1102, 1279, 1358, 1438, 2031
BssSI	CACGAG	2 cut(s)	137, 1815
BssT1I	CCWWGG	3 cut(s)	1061, 2280, 2566
Bst2BI	CACGAG	2 cut(s)	137, 1815
Bst2UI	CCWGG	1 cut(s)	2614
Bst4CI	ACNGT	5 cut(s)	369, 425, 956, 1213, 1848
Bst6I	CTCTTC	5 cut(s)	7, 160, 1542, 1822, 2361
BstAFI	CTTAAG	1 cut(s)	1244
BstBAI	YACGTR	2 cut(s)	938, 1226
BstDSI	CCRYGG	2 cut(s)	1061, 2566
BstENI	CCTNNNNNAGG	2 cut(s)	1247, 1366
BstF5I	GGATG	7 cut(s)	265, 406, 428, 656, 743, 1239, 2168
BstH2I	RGCGCY	3 cut(s)	52, 231, 2563
BstHHI	GCGC	4 cut(s)	51, 230, 303, 2562
BstKTI	GATC	9 cut(s)	124, 459, 598, 616, 1105, 1282, 1361, 1441, 2034
BstMAI	GTCTC	7 cut(s)	429, 705, 1127, 1507, 2050, 2285, 2337
BstMBI	GATC	9 cut(s)	121, 456, 595, 613, 1102, 1279, 1358, 1438, 2031
BstMWI	GCNNNNNNNGC	7 cut(s)	210, 298, 1263, 2085, 2137, 2475, 2644
BstNI	CCWGG	1 cut(s)	2614
BstNSI	RCATGY	2 cut(s)	2412, 2469
BstSCI	CCNGG	3 cut(s)	144, 2050, 2612
BstSFI	CTRYAG	2 cut(s)	390, 2339
BstSLI	GKGCMC	1 cut(s)	1325
BstV1I	GCAGC	7 cut(s)	225, 404, 1785, 2140, 2468, 2476, 2647
BstV2I	GAAGAC	1 cut(s)	2245
BstX2I	RGATCY	6 cut(s)	595, 613, 1102, 1279, 1358, 1438
BstYI	RGATCY	6 cut(s)	595, 613, 1102, 1279, 1358, 1438
Bsu15I	ATCGAT	1 cut(s)	120
BsuI	GTATCC	2 cut(s)	1491, 1826
BsuRI	GGCC	5 cut(s)	537, 1059, 1266, 2478, 2610
BsuTUI	ATCGAT	1 cut(s)	120
BtgI	CCRYGG	2 cut(s)	1061, 2566
BtgZI	GCGATG	1 cut(s)	2005
BtsCI	GGATG	7 cut(s)	265, 406, 428, 656, 743, 1239, 2168
BtsI	GCAGTG	1 cut(s)	1122
BtsIMutI	CAGTG	8 cut(s)	182, 336, 466, 811, 904, 1122, 1209, 1599
BveI	ACCTGC	2 cut(s)	531, 2079
CaiI	CAGNNNCTG	1 cut(s)	2018
CfoI	GCGC	4 cut(s)	51, 230, 303, 2562
Cfr13I	GGNCC	3 cut(s)	1058, 2477, 2609
ClaI	ATCGAT	1 cut(s)	120
CseI	GACGC	1 cut(s)	205
Csp6I	GTAC	3 cut(s)	1097, 1768, 2243
CviQI	GTAC	3 cut(s)	1097, 1768, 2243
DpnI	GATC	9 cut(s)	123, 458, 597, 615, 1104, 1281, 1360, 1440, 2033
DpnII	GATC	9 cut(s)	121, 456, 595, 613, 1102, 1279, 1358, 1438, 2031
DraI	TTTAAA	1 cut(s)	2064
EaeI	YGGCCR	1 cut(s)	535
Eam1104I	CTCTTC	5 cut(s)	7, 160, 1542, 1822, 2361
EarI	CTCTTC	5 cut(s)	7, 160, 1542, 1822, 2361
EciI	GGCGGA	2 cut(s)	70, 882
Ecl136II	GAGCTC	1 cut(s)	316
Eco130I	CCWWGG	3 cut(s)	1061, 2280, 2566
Eco24I	GRGCYC	3 cut(s)	194, 318, 2699
Eco31I	GGTCTC	2 cut(s)	429, 2050
Eco32I	GATATC	2 cut(s)	118, 1374
Eco53kI	GAGCTC	1 cut(s)	316
Eco57I	CTGAAG	1 cut(s)	2385
Eco88I	CYCGRG	2 cut(s)	396, 1524
EcoICRI	GAGCTC	1 cut(s)	316
EcoNI	CCTNNNNNAGG	2 cut(s)	1247, 1366
EcoO109I	RGGNCCY	1 cut(s)	2609
EcoRII	CCWGG	1 cut(s)	2612
EcoRV	GATATC	2 cut(s)	118, 1374
EcoT14I	CCWWGG	3 cut(s)	1061, 2280, 2566
EcoT22I	ATGCAT	2 cut(s)	1147, 2471
EcoT38I	GRGCYC	3 cut(s)	194, 318, 2699
ErhI	CCWWGG	3 cut(s)	1061, 2280, 2566
FalI	AAGNNNNNCTT	2 cut(s)	2577, 2609
FaqI	GGGAC	3 cut(s)	127, 761, 1375
FauI	CCCGC	1 cut(s)	181
FblI	GTMKAC	1 cut(s)	2500
Fnu4HI	GCNGC	8 cut(s)	214, 393, 538, 1799, 2129, 2457, 2490, 2636
FokI	GGATG	7 cut(s)	272, 413, 415, 663, 750, 1226, 2175
FriOI	GRGCYC	3 cut(s)	194, 318, 2699
Fsp4HI	GCNGC	8 cut(s)	214, 393, 538, 1799, 2129, 2457, 2490, 2636
FspBI	CTAG	9 cut(s)	273, 311, 686, 1335, 1736, 1916, 2004, 2132, 2309
GlaI	GCGC	4 cut(s)	50, 229, 302, 2561
GluI	GCNGC	8 cut(s)	214, 393, 538, 1799, 2129, 2457, 2490, 2636
GsaI	CCCAGC	1 cut(s)	301
HaeII	RGCGCY	3 cut(s)	52, 231, 2563
HaeIII	GGCC	5 cut(s)	537, 1059, 1266, 2478, 2610
HapII	CCGG	3 cut(s)	146, 1652, 2051
HgaI	GACGC	1 cut(s)	205
HhaI	GCGC	4 cut(s)	51, 230, 303, 2562
Hin6I	GCGC	4 cut(s)	49, 228, 301, 2560
HinP1I	GCGC	4 cut(s)	49, 228, 301, 2560
HincII	GTYRAC	5 cut(s)	421, 1717, 2199, 2422, 2501
HindII	GTYRAC	5 cut(s)	421, 1717, 2199, 2422, 2501
HindIII	AAGCTT	2 cut(s)	19, 2591
HpaI	GTTAAC	1 cut(s)	2422
HpaII	CCGG	3 cut(s)	146, 1652, 2051
HphI	GGTGA	6 cut(s)	523, 560, 953, 1442, 2327, 2594
Hpy166II	GTNNAC	6 cut(s)	421, 1433, 1717, 2199, 2422, 2501
Hpy8I	GTNNAC	6 cut(s)	421, 1433, 1717, 2199, 2422, 2501
HpyAV	CCTTC	4 cut(s)	65, 143, 1976, 2150
HpyCH4III	ACNGT	5 cut(s)	369, 425, 956, 1213, 1848
HpyCH4IV	ACGT	2 cut(s)	937, 1225
HpyF10VI	GCNNNNNNNGC	7 cut(s)	210, 298, 1263, 2085, 2137, 2475, 2644
HpySE526I	ACGT	2 cut(s)	937, 1225
HspAI	GCGC	4 cut(s)	49, 228, 301, 2560
KspAI	GTTAAC	1 cut(s)	2422
Kzo9I	GATC	9 cut(s)	121, 456, 595, 613, 1102, 1279, 1358, 1438, 2031
LguI	GCTCTTC	1 cut(s)	160
LmnI	GCTCC	4 cut(s)	1687, 1864, 2110, 2281
Lsp1109I	GCAGC	7 cut(s)	225, 404, 1785, 2140, 2468, 2476, 2647
LweI	GCATC	7 cut(s)	641, 728, 1154, 1248, 1298, 1765, 2478
MaeI	CTAG	9 cut(s)	273, 311, 686, 1335, 1736, 1916, 2004, 2132, 2309
MaeII	ACGT	2 cut(s)	937, 1225
MaeIII	GTNAC	7 cut(s)	356, 481, 742, 794, 1911, 2391, 2461
MalI	GATC	9 cut(s)	123, 458, 597, 615, 1104, 1281, 1360, 1440, 2033
MboI	GATC	9 cut(s)	121, 456, 595, 613, 1102, 1279, 1358, 1438, 2031
MfeI	CAATTG	2 cut(s)	1854, 2073
MflI	RGATCY	6 cut(s)	595, 613, 1102, 1279, 1358, 1438
MhlI	GDGCHC	5 cut(s)	194, 318, 1325, 1869, 2699
MlyI	GAGTC	7 cut(s)	353, 1004, 1397, 1971, 2024, 2339, 2616
MmeI	TCCRAC	1 cut(s)	1508
Mph1103I	ATGCAT	2 cut(s)	1147, 2471
MroXI	GAANNNNTTC	3 cut(s)	955, 1808, 2370
MslI	CAYNNNNRTG	2 cut(s)	137, 258
MspA1I	CMGCKG	1 cut(s)	2459
MspCI	CTTAAG	1 cut(s)	1244
MspI	CCGG	3 cut(s)	146, 1652, 2051
MspR9I	CCNGG	3 cut(s)	146, 2052, 2614
MunI	CAATTG	2 cut(s)	1854, 2073
Mva1269I	GAATGC	1 cut(s)	2544
MvaI	CCWGG	1 cut(s)	2614
MwoI	GCNNNNNNNGC	7 cut(s)	210, 298, 1263, 2085, 2137, 2475, 2644
NciI	CCSGG	2 cut(s)	146, 2052
NcoI	CCATGG	2 cut(s)	1061, 2566
NdeII	GATC	9 cut(s)	121, 456, 595, 613, 1102, 1279, 1358, 1438, 2031
NheI	GCTAGC	2 cut(s)	685, 2131
NlaIV	GGNNCC	7 cut(s)	280, 468, 615, 1104, 1360, 1683, 2611
NmeAIII	GCCGAG	2 cut(s)	1424, 2176
NmuCI	GTSAC	3 cut(s)	356, 481, 794
NsiI	ATGCAT	2 cut(s)	1147, 2471
NspI	RCATGY	2 cut(s)	2412, 2469
OliI	CACNNNNGTG	1 cut(s)	137
PaeR7I	CTCGAG	1 cut(s)	1524
PasI	CCCWGGG	1 cut(s)	2613
PciSI	GCTCTTC	1 cut(s)	160
PctI	GAATGC	1 cut(s)	2544
PdmI	GAANNNNTTC	3 cut(s)	955, 1808, 2370
PfeI	GAWTC	8 cut(s)	109, 340, 514, 644, 875, 1634, 1673, 2371
PkrI	GCNGC	8 cut(s)	215, 394, 539, 1800, 2130, 2458, 2491, 2637
PleI	GAGTC	7 cut(s)	353, 1003, 1396, 1970, 2023, 2338, 2616
PpsI	GAGTC	7 cut(s)	353, 1003, 1396, 1970, 2023, 2338, 2616
Ppu21I	YACGTR	2 cut(s)	938, 1226
PsiI	TTATAA	1 cut(s)	1163
Psp124BI	GAGCTC	1 cut(s)	318
Psp6I	CCWGG	1 cut(s)	2612
PspFI	CCCAGC	1 cut(s)	297
PspGI	CCWGG	1 cut(s)	2612
PspN4I	GGNNCC	7 cut(s)	280, 468, 615, 1104, 1360, 1683, 2611
PspPI	GGNCC	3 cut(s)	1058, 2477, 2609
PstI	CTGCAG	1 cut(s)	394
PstNI	CAGNNNCTG	1 cut(s)	2018
PsuI	RGATCY	6 cut(s)	595, 613, 1102, 1279, 1358, 1438
PvuII	CAGCTG	1 cut(s)	2459
RsaI	GTAC	3 cut(s)	1098, 1769, 2244
RsaNI	GTAC	3 cut(s)	1097, 1768, 2243
RseI	CAYNNNNRTG	2 cut(s)	137, 258
SacI	GAGCTC	1 cut(s)	318
SalI	GTCGAC	1 cut(s)	2499
SapI	GCTCTTC	1 cut(s)	160
SatI	GCNGC	8 cut(s)	214, 393, 538, 1799, 2129, 2457, 2490, 2636
Sau3AI	GATC	9 cut(s)	121, 456, 595, 613, 1102, 1279, 1358, 1438, 2031
Sau96I	GGNCC	3 cut(s)	1058, 2477, 2609
ScaI	AGTACT	1 cut(s)	1098
SchI	GAGTC	7 cut(s)	353, 1004, 1397, 1971, 2024, 2339, 2616
ScrFI	CCNGG	3 cut(s)	146, 2052, 2614
SduI	GDGCHC	5 cut(s)	194, 318, 1325, 1869, 2699
SfaNI	GCATC	7 cut(s)	641, 728, 1154, 1248, 1298, 1765, 2478
SfcI	CTRYAG	2 cut(s)	390, 2339
Sfr274I	CTCGAG	1 cut(s)	1524
SlaI	CTCGAG	1 cut(s)	1524
SmiMI	CAYNNNNRTG	2 cut(s)	137, 258
SmlI	CTYRAG	5 cut(s)	22, 589, 1244, 1524, 1751
SmoI	CTYRAG	5 cut(s)	22, 589, 1244, 1524, 1751
SsiI	CCGC	7 cut(s)	81, 188, 538, 893, 1385, 2118, 2257
SspI	AATATT	1 cut(s)	2144
SspMI	CTAG	9 cut(s)	273, 311, 686, 1335, 1736, 1916, 2004, 2132, 2309
SstI	GAGCTC	1 cut(s)	318
StyD4I	CCNGG	3 cut(s)	144, 2050, 2612
StyI	CCWWGG	3 cut(s)	1061, 2280, 2566
TaaI	ACNGT	5 cut(s)	369, 425, 956, 1213, 1848
TaiI	ACGT	2 cut(s)	940, 1228
TaqI	TCGA	9 cut(s)	120, 335, 409, 993, 1007, 1525, 2328, 2413, 2500
TatI	WGTACW	1 cut(s)	1096
TauI	GCSGC	1 cut(s)	540
TfiI	GAWTC	8 cut(s)	109, 340, 514, 644, 875, 1634, 1673, 2371
TscAI	CASTG	8 cut(s)	189, 336, 466, 811, 904, 1122, 1216, 1606
TseFI	GTSAC	3 cut(s)	356, 481, 794
TseI	GCWGC	7 cut(s)	213, 392, 1798, 2128, 2456, 2489, 2635
Tsp45I	GTSAC	3 cut(s)	356, 481, 794
TspGWI	ACGGA	1 cut(s)	1066
TspRI	CASTG	8 cut(s)	189, 336, 466, 811, 904, 1122, 1216, 1606
Vha464I	CTTAAG	1 cut(s)	1244
XagI	CCTNNNNNAGG	2 cut(s)	1247, 1366
XapI	RAATTY	6 cut(s)	346, 727, 985, 1512, 1740, 2346
XbaI	TCTAGA	2 cut(s)	272, 310
XceI	RCATGY	2 cut(s)	2412, 2469
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1989
XhoI	CTCGAG	1 cut(s)	1524
XmiI	GTMKAC	1 cut(s)	2500
XmnI	GAANNNNTTC	3 cut(s)	955, 1808, 2370
XspI	CTAG	9 cut(s)	273, 311, 686, 1335, 1736, 1916, 2004, 2132, 2309
ZrmI	AGTACT	1 cut(s)	1098
Zsp2I	ATGCAT	2 cut(s)	1147, 2471

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.