Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0002964

Physical Location & Seq

Genomic Coordinates Forward (+)

30344122 .. 30353063

Gene Structure 8942 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000008424

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2622 bp

ATGCTAAACGGAAGAGAAAGCTTGAGCCGATTGGTGGGCAAACGCAGGCGCTTCCTTCCCAATCGTCATTCACTCCTCTCCGCCCCTACCACCACCACGAGCTTATTGAATCTGGATATCGATCCAAATGGCAAACTCGTGTCCCTGGAAGGCTCTTCAAATCAAGACGAACAAGAAAACACACTGGTGGGCTCTGTTACTTGCCCTGTTTGCAGCGTCAAACTCAGTGCCCAAAACAACACCATCAATTCTCATCTGGATGAGTGTCTATCTAGAGGAACCAAACGAAAGCTAACCCAGCGCACACTTCTAGAGCTGAACTTCTGCCAAGTGTCGAAAATTCAAAATTTTTCCTGTGACACTAAAGAGTTTGGAAATGATTTATTTCCTGCAGCTCGTGATGAGAGTCATGTACAAGATGCGTCGTGGGGGTTGTCTAACTTGAGGGCTGTTGACGAAAGTCAAAATCAGGTTGACGGTCCATCCAGAAACCCAATCAATAAGGACGAGATCAGTGAGGTGCCAGATTTTGATGTGACCATCACTCAGGACAACATATATGGGGTGATTCTTGAAACTTTTATTGTTGGCCGCAGGTTTGGTGATGAAACTGATTTATATCTTGGTGCAAGCATTTATCTCTCAAGAGATCCTGATAATGTTAAGGATCCTAATGCTATCAAGGTTGTTTATTCAGATTCAGGATGCCTTAAAATGCTTGGTTTTCTGCCTCGCAAGCTAGCTGAGTATTTGTCTCCTCTGATAGACCAGTATCGTCTAAATTTTGAGGGATGCGTTACCTCTGTTCCCAAGCGTTCTATTGATGTTGTCCCAATACAGATAGTGTGTCACAAGACCAGTGATAATAAGGACTTTAATGATGACAAGGTTTTCAAATGTTTATGGAGAAATGCTCAGCAAGTAATTGAATCTACAAAGTCCTGTCCGCCCAGTGCAATAAAATATCAGGATAACTTTTGTGTTTTCATACATGAGGTTTTGAGAAACAGTTCTCACCTCTTGACAGATGATGAAAAGAATTTCATCGAGTCATTTACTTCGATGTCAGATGATAGTCAGAGGCTATTTGTTCGGCTTTATACACGGAAAGGCCCATGGTTTCGGCTGTCTGCTATTTCATACCCAGAAGTACTGGATCCCCAACAAGCAGTGAAAGAGCTATCTGAGACAGGGTATACATCTTGCTTTGAAATTACAAATAAACTATCTGATGATTGTATTAAGGAGATTTTGGATTTGCTCACTGTATCTGAACTACGTGAAATCTTGTGCATCCTTAAGCAGAGTTGCAATCGTGGCCTAAGAAAGCAGGATCTCATTGCATCTCTTATATCTTCTTACAATGGAGATTTGTGCTCATTACTACCTAGTATGGTTTTGCACAGAACAGGATCCTGTGTTAGGATATCTTCAAATGCGGAGTCCCTTATCTGGCGTGCTGAGAGGCTTTTCTTCCTGAATGGTGAACAGGATCTCTCGGCATTTCTACTGGTGGATTTGGGAATAGTCAAGTATCCAACTTACAAGTGCATAGTCTCACAACAAATTTTCTCAGCTCGAGATGATTTGCTTGGCTATGAAGAGGCTATTGAAGTGGCACAAATAGTTGATGAAGCTCTTGATGGAAGCAACACTGGATTGGTCTTAAAGTGCATAAAGATAGCTGATTCCCATTTATCCAATCCGGTTCAATCCTTGACCTCTGAATCAACGGCTCCATTCCTTCCCCACTTTTCAGCAACATTTGTCTACTCAAAAGTGGTTTTACTAGGAATTTCTTTTCTTGAGCGTGAGCATAGGTACAATGATGCTATCTATTTACTGAAAAGGCTGCTGAATTGTTTCGCTTGTGATGGTAGAAGAGGATACTGGACACTACGGTTATCAATTGATTTGGAGCACATGGGCTATCTGAATGAGAGCCTTTTGGCTGTAAATGTTCAAGGGAGACCTTTAAATTGTGCAATTGGCACAAAGAGCAGGTTTTATGGAGAAGATGGGGAGCAATGTGGTGTAGAGCAGCTAGCTCTGCAGTATTATGCCGAGGAAGGTGGATGGCAGGGTGTTCATACAGAGAGTGGCATTTGGTTGACTATTTTTGGACTTCTTATGTGGGATATTATATTTTCCAATGTACCAAATGTCTTCCGCACCAGATTTCAGACTGCTCCCTTGGATTTAGAGACTGATAGCTTTTATCTAGTGAGAAAGAACCATATCGAGTCTCACCTACAGAAAATTCGTGATGGCATGGCTGAGGAGATTCTCATCACTTCATGGGAGTTACATGAGGGAACAGCATGTCGAGGAGTTAACTGGGGGCGACATTCCCTCTCTGAGCTTCGGGCAGCTGTTACATGCATCGGTGGCCCATGTGTGGCTGCATTTTGTCGACATCTTGCACAAGATTATCGTAGTTGGTCAAGTGGAATGCCAGATTTACTTCTGTGGCGCTTCCATGGGAAATACAGAGGTGAAGCGAAGCTTGTCGAAGTTAAAGGCCCCAGGGATAGACTCTCTGAACAGCAGCGAGCATGGCTATTGCTTTTAATGGATTGTGGGTTCAATGCCGAGGTCTGTAAAGTGAGCCCTATTGTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000280 GO:0003674 GO:0003676 GO:0003677 GO:0003824 GO:0004518 GO:0004519 GO:0004520 GO:0004527 GO:0004536 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006281 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007049 GO:0007059 GO:0007127 GO:0007129 GO:0008150 GO:0008152 GO:0008409 GO:0009987 GO:0016043 GO:0016787 GO:0016788 GO:0016888 GO:0016893 GO:0017108 GO:0022402 GO:0022414 GO:0033554 GO:0034641 GO:0036297 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0045132 GO:0045143 GO:0046483 GO:0048256 GO:0048285 GO:0050896 GO:0051276 GO:0051321 GO:0051716 GO:0061982 GO:0070192 GO:0070336 GO:0071704 GO:0071840 GO:0090304 GO:0090305 GO:0097159 GO:0098813 GO:0140013 GO:0140097 GO:1901360 GO:1901363 GO:1903046

KEGG Pathways

Metabolic & Signaling

ko03460 map03460

Pfam Domains

Protein Families

HIRAN VRR_NUC

Protein Analysis

874

Amino Acids

98.54

Weight (kDa)

5.59

Isoelectric Point (pI)

40.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HIRAN	PF08797	191 - 272	1.7e-13	HIRAN domain
FAN1_HTH	PF21315	322 - 399	1e-17	FAN1, HTH domain
FAN1_TPR	PF21170	529 - 642	1.3e-06	Fanconi-associated nuclease 1, TPR domain
VRR_NUC	PF08774	756 - 870	1.6e-36	VRR-NUC domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002964)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G48360 AT1G48360 AT1G48360 AT1G48360 AT1G48360 AT1G48360
fragaria_vesca	FvH4_4g12370 FvH4_4g12370 FvH4_4g12370 FvH4_4g12370 FvH4_4g12370 FvH4_4g12370 FvH4_4g12370 FvH4_4g12370
malus_domestica	MD00G1163900.v1.1 MD09G1250200.v1.1 MD09G1250400.v1.1
prunus_persica	Prupe.1G176700_v2.0.a1 Prupe.1G176700_v2.0.a1 Prupe.1G176700_v2.0.a1 Prupe.1G176700_v2.0.a1 Prupe.1G176700_v2.0.a1
pyrus_communis	pycom04g02280 pycom13g29380
rosa_chinensis	RchiOBHm_Chr4g0410481
rosa_laevigata	RLG00000008424
rosa_multiflora	Rmu_sc0001969.1_g000008 Rmu_sc0016181.1_g000004
rosa_roxburghii	Rroxscaffold_5G00355290
rosa_rugosa	Rorug04G0114400
rosa_samantha	Rh4AG160900 Rh4BG160300 Rh4CG173100 Rh4DG156400
rosa_wichuraiana	Rw0G014390 Rw0G014400 Rw4G013420 Rw4G037760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	585, 1992
AccB1I	GGYRCC	1 cut(s)	520
AccI	GTMKAC	3 cut(s)	1196, 1770, 2413
AciI	CCGC	5 cut(s)	81, 592, 947, 1439, 2170
AcoI	YGGCCR	1 cut(s)	589
AcsI	RAATTY	7 cut(s)	339, 346, 781, 1039, 1566, 1794, 2259
AfaI	GTAC	4 cut(s)	414, 1152, 1823, 2157
AfiI	CCNNNNNNNGG	4 cut(s)	34, 1422, 1452, 2398
AflII	CTTAAG	1 cut(s)	1298
AjnI	CCWGG	2 cut(s)	144, 2525
AleI	CACNNNNGTG	1 cut(s)	185
AloI	GAACNNNNNNTCC	2 cut(s)	2567, 2599
Alw21I	GWGCWC	2 cut(s)	1379, 1923
Alw26I	GTCTC	6 cut(s)	759, 1181, 1561, 1963, 2198, 2250
Ama87I	CYCGRG	1 cut(s)	1578
AoxI	GGCC	5 cut(s)	589, 1111, 1318, 2389, 2521
ApeKI	GCWGC	7 cut(s)	213, 392, 1852, 2041, 2369, 2402, 2548
ApoI	RAATTY	7 cut(s)	339, 346, 781, 1039, 1566, 1794, 2259
ArsI	GACNNNNNNTTYG	2 cut(s)	1427, 1459
Asp700I	GAANNNNTTC	2 cut(s)	1009, 1862
AspLEI	GCGC	3 cut(s)	51, 303, 2475
AspS9I	GGNCC	4 cut(s)	479, 1112, 2390, 2522
AsuHPI	GGTGA	6 cut(s)	577, 614, 1007, 1496, 2240, 2507
AsuNHI	GCTAGC	2 cut(s)	739, 2044
AvaI	CYCGRG	1 cut(s)	1578
AvaII	GGWCC	1 cut(s)	479
BaeGI	GKGCMC	1 cut(s)	232
BamHI	GGATCC	3 cut(s)	667, 1156, 1412
BanI	GGYRCC	1 cut(s)	520
BanII	GRGCYC	2 cut(s)	194, 2612
BauI	CACGAG	3 cut(s)	97, 137, 396
BbsI	GAAGAC	1 cut(s)	2158
Bbv12I	GWGCWC	2 cut(s)	1379, 1923
BbvCI	CCTCAGC	1 cut(s)	2277
BbvI	GCAGC	7 cut(s)	225, 404, 1839, 2053, 2381, 2389, 2560
BccI	CCATC	8 cut(s)	251, 490, 548, 1637, 1868, 2012, 2070, 2261
BceAI	ACGGC	1 cut(s)	1749
BciT130I	CCWGG	2 cut(s)	146, 2527
BciVI	GTATCC	2 cut(s)	1545, 1880
BcoDI	GTCTC	6 cut(s)	759, 1181, 1561, 1963, 2198, 2250
BfaI	CTAG	7 cut(s)	273, 311, 740, 1389, 1790, 2045, 2222
BfmI	CTRYAG	3 cut(s)	390, 2051, 2252
BfoI	RGCGCY	2 cut(s)	52, 2476
BfrI	CTTAAG	1 cut(s)	1298
BfuAI	ACCTGC	2 cut(s)	585, 1992
BfuI	GTATCC	2 cut(s)	1545, 1880
BisI	GCNGC	8 cut(s)	214, 393, 592, 1853, 2042, 2370, 2403, 2549
BlpI	GCTNAGC	1 cut(s)	915
BlsI	GCNGC	8 cut(s)	215, 394, 593, 1854, 2043, 2371, 2404, 2550
BmcAI	AGTACT	1 cut(s)	1152
Bme1390I	CCNGG	2 cut(s)	146, 2527
Bme18I	GGWCC	1 cut(s)	479
BmeT110I	CYCGRG	1 cut(s)	1578
BmgT120I	GGNCC	4 cut(s)	479, 1112, 2390, 2522
BmiI	GGNNCC	7 cut(s)	280, 522, 669, 1158, 1414, 1737, 2524
BmrFI	CCNGG	2 cut(s)	146, 2527
BmrI	ACTGGG	2 cut(s)	945, 2347
BmsI	GCATC	7 cut(s)	409, 695, 782, 1302, 1352, 1819, 2391
BmtI	GCTAGC	2 cut(s)	743, 2048
BmuI	ACTGGG	2 cut(s)	945, 2347
BoxI	GACNNNNGTC	1 cut(s)	459
BpiI	GAAGAC	1 cut(s)	2158
BplI	GAGNNNNNCTC	2 cut(s)	898, 930
Bpu10I	CCTNAGC	1 cut(s)	2277
Bpu1102I	GCTNAGC	1 cut(s)	915
BpuEI	CTTGAG	4 cut(s)	43, 463, 628, 1826
Bsa29I	ATCGAT	1 cut(s)	120
BsaAI	YACGTR	1 cut(s)	1280
BsaBI	GATNNNNATC	3 cut(s)	120, 618, 2288
BsaI	GGTCTC	1 cut(s)	1963
BsaJI	CCNNGG	8 cut(s)	144, 1115, 2064, 2193, 2479, 2525, 2526, 2592
BsaWI	WCCGGW	1 cut(s)	1705
Bsc4I	CCNNNNNNNGG	4 cut(s)	34, 1422, 1452, 2398
Bse1I	ACTGG	9 cut(s)	189, 769, 858, 951, 1158, 1515, 1660, 1895, 2342
Bse3DI	GCAATG	2 cut(s)	1338, 2033
Bse8I	GATNNNNATC	3 cut(s)	120, 618, 2288
BseBI	CCWGG	2 cut(s)	146, 2527
BseCI	ATCGAT	1 cut(s)	120
BseDI	CCNNGG	8 cut(s)	144, 1115, 2064, 2193, 2479, 2525, 2526, 2592
BseGI	GGATG	6 cut(s)	265, 482, 710, 797, 1293, 2081
BseJI	GATNNNNATC	3 cut(s)	120, 618, 2288
BseLI	CCNNNNNNNGG	4 cut(s)	34, 1422, 1452, 2398
BseMI	GCAATG	2 cut(s)	1338, 2033
BseMII	CTCAG	9 cut(s)	238, 560, 735, 929, 1176, 1452, 1587, 2268, 2349
BseNI	ACTGG	9 cut(s)	189, 769, 858, 951, 1158, 1515, 1660, 1895, 2342
BseRI	GAGGAG	4 cut(s)	65, 747, 2294, 2343
BseSI	GKGCMC	1 cut(s)	232
BseXI	GCAGC	7 cut(s)	225, 404, 1839, 2053, 2381, 2389, 2560
BseYI	CCCAGC	1 cut(s)	297
BshFI	GGCC	5 cut(s)	591, 1113, 1320, 2391, 2523
BshNI	GGYRCC	1 cut(s)	520
BshVI	ATCGAT	1 cut(s)	120
BsiHKAI	GWGCWC	2 cut(s)	1379, 1923
BsiHKCI	CYCGRG	1 cut(s)	1578
BsiSI	CCGG	1 cut(s)	1706
BslFI	GGGAC	3 cut(s)	127, 815, 1429
BslI	CCNNNNNNNGG	4 cut(s)	34, 1422, 1452, 2398
BsmAI	GTCTC	6 cut(s)	759, 1181, 1561, 1963, 2198, 2250
BsmFI	GGGAC	3 cut(s)	127, 815, 1429
BsmI	GAATGC	1 cut(s)	2457
BsnI	GGCC	5 cut(s)	591, 1113, 1320, 2391, 2523
Bso31I	GGTCTC	1 cut(s)	1963
BsoBI	CYCGRG	1 cut(s)	1578
Bsp1286I	GDGCHC	5 cut(s)	194, 232, 1379, 1923, 2612
Bsp1407I	TGTACA	1 cut(s)	412
Bsp143I	GATC	8 cut(s)	121, 510, 649, 667, 1156, 1333, 1412, 1492
Bsp1720I	GCTNAGC	1 cut(s)	915
Bsp19I	CCATGG	2 cut(s)	1115, 2479
BspACI	CCGC	5 cut(s)	81, 592, 947, 1439, 2170
BspANI	GGCC	5 cut(s)	591, 1113, 1320, 2391, 2523
BspCNI	CTCAG	9 cut(s)	237, 559, 736, 928, 1177, 1453, 1586, 2269, 2350
BspDI	ATCGAT	1 cut(s)	120
BspLI	GGNNCC	7 cut(s)	280, 522, 669, 1158, 1414, 1737, 2524
BspMAI	CTGCAG	2 cut(s)	394, 2055
BspMI	ACCTGC	2 cut(s)	585, 1992
BspOI	GCTAGC	2 cut(s)	743, 2048
BspQI	GCTCTTC	1 cut(s)	160
BspT107I	GGYRCC	1 cut(s)	520
BspTI	CTTAAG	1 cut(s)	1298
BspTNI	GGTCTC	1 cut(s)	1963
BsrDI	GCAATG	2 cut(s)	1338, 2033
BsrGI	TGTACA	1 cut(s)	412
BsrI	ACTGG	9 cut(s)	189, 769, 858, 951, 1158, 1515, 1660, 1895, 2342
BssECI	CCNNGG	8 cut(s)	144, 1115, 2064, 2193, 2479, 2525, 2526, 2592
BssMI	GATC	8 cut(s)	121, 510, 649, 667, 1156, 1333, 1412, 1492
BssNAI	GTATAC	1 cut(s)	1197
BssSI	CACGAG	3 cut(s)	97, 137, 396
BssT1I	CCWWGG	3 cut(s)	1115, 2193, 2479
Bst1107I	GTATAC	1 cut(s)	1197
Bst2BI	CACGAG	3 cut(s)	97, 137, 396
Bst2UI	CCWGG	2 cut(s)	146, 2527
Bst4CI	ACNGT	4 cut(s)	479, 1010, 1267, 1902
Bst6I	CTCTTC	4 cut(s)	7, 160, 1596, 1876
BstAFI	CTTAAG	1 cut(s)	1298
BstAUI	TGTACA	1 cut(s)	412
BstBAI	YACGTR	1 cut(s)	1280
BstC8I	GCNNGC	7 cut(s)	47, 631, 737, 741, 1458, 2046, 2553
BstDSI	CCRYGG	2 cut(s)	1115, 2479
BstENI	CCTNNNNNAGG	1 cut(s)	1420
BstF5I	GGATG	6 cut(s)	265, 482, 710, 797, 1293, 2081
BstH2I	RGCGCY	2 cut(s)	52, 2476
BstHHI	GCGC	3 cut(s)	51, 303, 2475
BstKTI	GATC	8 cut(s)	124, 513, 652, 670, 1159, 1336, 1415, 1495
BstMAI	GTCTC	6 cut(s)	759, 1181, 1561, 1963, 2198, 2250
BstMBI	GATC	8 cut(s)	121, 510, 649, 667, 1156, 1333, 1412, 1492
BstMWI	GCNNNNNNNGC	8 cut(s)	210, 298, 736, 1317, 1998, 2050, 2388, 2557
BstNI	CCWGG	2 cut(s)	146, 2527
BstNSI	RCATGY	2 cut(s)	2325, 2382
BstPAI	GACNNNNGTC	1 cut(s)	459
BstSCI	CCNGG	2 cut(s)	144, 2525
BstSFI	CTRYAG	3 cut(s)	390, 2051, 2252
BstSLI	GKGCMC	1 cut(s)	232
BstV1I	GCAGC	7 cut(s)	225, 404, 1839, 2053, 2381, 2389, 2560
BstV2I	GAAGAC	1 cut(s)	2158
BstX2I	RGATCY	6 cut(s)	649, 667, 1156, 1333, 1412, 1492
BstYI	RGATCY	6 cut(s)	649, 667, 1156, 1333, 1412, 1492
BstZ17I	GTATAC	1 cut(s)	1197
Bsu15I	ATCGAT	1 cut(s)	120
BsuI	GTATCC	2 cut(s)	1545, 1880
BsuRI	GGCC	5 cut(s)	591, 1113, 1320, 2391, 2523
BsuTUI	ATCGAT	1 cut(s)	120
BtgI	CCRYGG	2 cut(s)	1115, 2479
BtsCI	GGATG	6 cut(s)	265, 482, 710, 797, 1293, 2081
BtsI	GCAGTG	1 cut(s)	1176
BtsIMutI	CAGTG	8 cut(s)	182, 232, 520, 865, 958, 1176, 1263, 1653
BveI	ACCTGC	2 cut(s)	585, 1992
Cac8I	GCNNGC	7 cut(s)	47, 631, 737, 741, 1458, 2046, 2553
CfoI	GCGC	3 cut(s)	51, 303, 2475
Cfr13I	GGNCC	4 cut(s)	479, 1112, 2390, 2522
ClaI	ATCGAT	1 cut(s)	120
CseI	GACGC	2 cut(s)	205, 411
Csp6I	GTAC	4 cut(s)	413, 1151, 1822, 2156
CviQI	GTAC	4 cut(s)	413, 1151, 1822, 2156
DpnI	GATC	8 cut(s)	123, 512, 651, 669, 1158, 1335, 1414, 1494
DpnII	GATC	8 cut(s)	121, 510, 649, 667, 1156, 1333, 1412, 1492
DraI	TTTAAA	1 cut(s)	1977
EaeI	YGGCCR	1 cut(s)	589
Eam1104I	CTCTTC	4 cut(s)	7, 160, 1596, 1876
EarI	CTCTTC	4 cut(s)	7, 160, 1596, 1876
EciI	GGCGGA	2 cut(s)	70, 936
Eco130I	CCWWGG	3 cut(s)	1115, 2193, 2479
Eco24I	GRGCYC	2 cut(s)	194, 2612
Eco31I	GGTCTC	1 cut(s)	1963
Eco32I	GATATC	2 cut(s)	118, 1428
Eco47I	GGWCC	1 cut(s)	479
Eco88I	CYCGRG	1 cut(s)	1578
EcoNI	CCTNNNNNAGG	1 cut(s)	1420
EcoO109I	RGGNCCY	1 cut(s)	2522
EcoRII	CCWGG	2 cut(s)	144, 2525
EcoRV	GATATC	2 cut(s)	118, 1428
EcoT14I	CCWWGG	3 cut(s)	1115, 2193, 2479
EcoT22I	ATGCAT	1 cut(s)	2384
EcoT38I	GRGCYC	2 cut(s)	194, 2612
ErhI	CCWWGG	3 cut(s)	1115, 2193, 2479
FalI	AAGNNNNNCTT	2 cut(s)	2490, 2522
FaqI	GGGAC	3 cut(s)	127, 815, 1429
FblI	GTMKAC	3 cut(s)	1196, 1770, 2413
Fnu4HI	GCNGC	8 cut(s)	214, 393, 592, 1853, 2042, 2370, 2403, 2549
FokI	GGATG	6 cut(s)	272, 469, 717, 804, 1280, 2088
FriOI	GRGCYC	2 cut(s)	194, 2612
Fsp4HI	GCNGC	8 cut(s)	214, 393, 592, 1853, 2042, 2370, 2403, 2549
FspBI	CTAG	7 cut(s)	273, 311, 740, 1389, 1790, 2045, 2222
GlaI	GCGC	3 cut(s)	50, 302, 2474
GluI	GCNGC	8 cut(s)	214, 393, 592, 1853, 2042, 2370, 2403, 2549
GsaI	CCCAGC	1 cut(s)	301
HaeII	RGCGCY	2 cut(s)	52, 2476
HaeIII	GGCC	5 cut(s)	591, 1113, 1320, 2391, 2523
HapII	CCGG	1 cut(s)	1706
HgaI	GACGC	2 cut(s)	205, 411
HhaI	GCGC	3 cut(s)	51, 303, 2475
Hin6I	GCGC	3 cut(s)	49, 301, 2473
HinP1I	GCGC	3 cut(s)	49, 301, 2473
HincII	GTYRAC	5 cut(s)	454, 475, 2112, 2335, 2414
HindII	GTYRAC	5 cut(s)	454, 475, 2112, 2335, 2414
HindIII	AAGCTT	2 cut(s)	19, 2504
HpaI	GTTAAC	1 cut(s)	2335
HpaII	CCGG	1 cut(s)	1706
HphI	GGTGA	6 cut(s)	577, 614, 1007, 1496, 2240, 2507
Hpy166II	GTNNAC	8 cut(s)	454, 475, 1197, 1487, 1771, 2112, 2335, 2414
Hpy8I	GTNNAC	8 cut(s)	454, 475, 1197, 1487, 1771, 2112, 2335, 2414
Hpy99I	CGWCG	1 cut(s)	427
HpyAV	CCTTC	4 cut(s)	65, 143, 1754, 2063
HpyCH4III	ACNGT	4 cut(s)	479, 1010, 1267, 1902
HpyCH4IV	ACGT	1 cut(s)	1279
HpyF10VI	GCNNNNNNNGC	8 cut(s)	210, 298, 736, 1317, 1998, 2050, 2388, 2557
HpySE526I	ACGT	1 cut(s)	1279
HspAI	GCGC	3 cut(s)	49, 301, 2473
KspAI	GTTAAC	1 cut(s)	2335
Kzo9I	GATC	8 cut(s)	121, 510, 649, 667, 1156, 1333, 1412, 1492
LguI	GCTCTTC	1 cut(s)	160
LmnI	GCTCC	4 cut(s)	1741, 1918, 2023, 2194
Lsp1109I	GCAGC	7 cut(s)	225, 404, 1839, 2053, 2381, 2389, 2560
LweI	GCATC	7 cut(s)	409, 695, 782, 1302, 1352, 1819, 2391
MaeI	CTAG	7 cut(s)	273, 311, 740, 1389, 1790, 2045, 2222
MaeII	ACGT	1 cut(s)	1279
MaeIII	GTNAC	7 cut(s)	196, 356, 535, 796, 848, 2304, 2374
MalI	GATC	8 cut(s)	123, 512, 651, 669, 1158, 1335, 1414, 1494
MboI	GATC	8 cut(s)	121, 510, 649, 667, 1156, 1333, 1412, 1492
MboII	GAAGA	9 cut(s)	24, 147, 1347, 1422, 1465, 1613, 1893, 2027, 2158
MfeI	CAATTG	2 cut(s)	1908, 1986
MflI	RGATCY	6 cut(s)	649, 667, 1156, 1333, 1412, 1492
MhlI	GDGCHC	5 cut(s)	194, 232, 1379, 1923, 2612
MlyI	GAGTC	5 cut(s)	415, 1058, 1451, 2252, 2529
MmeI	TCCRAC	1 cut(s)	1562
Mph1103I	ATGCAT	1 cut(s)	2384
MroXI	GAANNNNTTC	2 cut(s)	1009, 1862
MslI	CAYNNNNRTG	2 cut(s)	185, 258
MspA1I	CMGCKG	1 cut(s)	2372
MspCI	CTTAAG	1 cut(s)	1298
MspI	CCGG	1 cut(s)	1706
MspR9I	CCNGG	2 cut(s)	146, 2527
MunI	CAATTG	2 cut(s)	1908, 1986
Mva1269I	GAATGC	1 cut(s)	2457
MvaI	CCWGG	2 cut(s)	146, 2527
MwoI	GCNNNNNNNGC	8 cut(s)	210, 298, 736, 1317, 1998, 2050, 2388, 2557
NcoI	CCATGG	2 cut(s)	1115, 2479
NdeII	GATC	8 cut(s)	121, 510, 649, 667, 1156, 1333, 1412, 1492
NheI	GCTAGC	2 cut(s)	739, 2044
NlaIV	GGNNCC	7 cut(s)	280, 522, 669, 1158, 1414, 1737, 2524
NmeAIII	GCCGAG	3 cut(s)	1478, 2089, 2617
NmuCI	GTSAC	3 cut(s)	356, 535, 848
NsiI	ATGCAT	1 cut(s)	2384
NspI	RCATGY	2 cut(s)	2325, 2382
OliI	CACNNNNGTG	1 cut(s)	185
PaeR7I	CTCGAG	1 cut(s)	1578
PasI	CCCWGGG	1 cut(s)	2526
PciSI	GCTCTTC	1 cut(s)	160
PctI	GAATGC	1 cut(s)	2457
PdmI	GAANNNNTTC	2 cut(s)	1009, 1862
PfeI	GAWTC	7 cut(s)	109, 568, 698, 929, 1688, 1727, 2284
PkrI	GCNGC	8 cut(s)	215, 394, 593, 1854, 2043, 2371, 2404, 2550
PleI	GAGTC	5 cut(s)	414, 1057, 1450, 2251, 2529
PpsI	GAGTC	5 cut(s)	414, 1057, 1450, 2251, 2529
Ppu21I	YACGTR	1 cut(s)	1280
PshAI	GACNNNNGTC	1 cut(s)	459
Psp6I	CCWGG	2 cut(s)	144, 2525
PspFI	CCCAGC	1 cut(s)	297
PspGI	CCWGG	2 cut(s)	144, 2525
PspN4I	GGNNCC	7 cut(s)	280, 522, 669, 1158, 1414, 1737, 2524
PspPI	GGNCC	4 cut(s)	479, 1112, 2390, 2522
PstI	CTGCAG	2 cut(s)	394, 2055
PsuI	RGATCY	6 cut(s)	649, 667, 1156, 1333, 1412, 1492
PvuII	CAGCTG	1 cut(s)	2372
RsaI	GTAC	4 cut(s)	414, 1152, 1823, 2157
RsaNI	GTAC	4 cut(s)	413, 1151, 1822, 2156
RseI	CAYNNNNRTG	2 cut(s)	185, 258
SalI	GTCGAC	1 cut(s)	2412
SapI	GCTCTTC	1 cut(s)	160
SatI	GCNGC	8 cut(s)	214, 393, 592, 1853, 2042, 2370, 2403, 2549
Sau3AI	GATC	8 cut(s)	121, 510, 649, 667, 1156, 1333, 1412, 1492
Sau96I	GGNCC	4 cut(s)	479, 1112, 2390, 2522
ScaI	AGTACT	1 cut(s)	1152
SchI	GAGTC	5 cut(s)	415, 1058, 1451, 2252, 2529
ScrFI	CCNGG	2 cut(s)	146, 2527
SduI	GDGCHC	5 cut(s)	194, 232, 1379, 1923, 2612
SfaNI	GCATC	7 cut(s)	409, 695, 782, 1302, 1352, 1819, 2391
SfcI	CTRYAG	3 cut(s)	390, 2051, 2252
Sfr274I	CTCGAG	1 cut(s)	1578
SinI	GGWCC	1 cut(s)	479
SlaI	CTCGAG	1 cut(s)	1578
SmiMI	CAYNNNNRTG	2 cut(s)	185, 258
SmlI	CTYRAG	6 cut(s)	22, 442, 643, 1298, 1578, 1805
SmoI	CTYRAG	6 cut(s)	22, 442, 643, 1298, 1578, 1805
SsiI	CCGC	5 cut(s)	81, 592, 947, 1439, 2170
SspMI	CTAG	7 cut(s)	273, 311, 740, 1389, 1790, 2045, 2222
StyD4I	CCNGG	2 cut(s)	144, 2525
StyI	CCWWGG	3 cut(s)	1115, 2193, 2479
TaaI	ACNGT	4 cut(s)	479, 1010, 1267, 1902
TaiI	ACGT	1 cut(s)	1282
TaqI	TCGA	9 cut(s)	120, 335, 1047, 1061, 1579, 2241, 2326, 2413, 2511
TatI	WGTACW	2 cut(s)	412, 1150
TauI	GCSGC	1 cut(s)	594
TfiI	GAWTC	7 cut(s)	109, 568, 698, 929, 1688, 1727, 2284
TscAI	CASTG	8 cut(s)	189, 232, 520, 865, 958, 1176, 1270, 1660
TseFI	GTSAC	3 cut(s)	356, 535, 848
TseI	GCWGC	7 cut(s)	213, 392, 1852, 2041, 2369, 2402, 2548
Tsp45I	GTSAC	3 cut(s)	356, 535, 848
TspDTI	ATGAA	9 cut(s)	621, 976, 1033, 1047, 1128, 1614, 1647, 2078, 2286
TspGWI	ACGGA	2 cut(s)	24, 1120
TspRI	CASTG	8 cut(s)	189, 232, 520, 865, 958, 1176, 1270, 1660
Vha464I	CTTAAG	1 cut(s)	1298
VpaK11BI	GGWCC	1 cut(s)	479
XagI	CCTNNNNNAGG	1 cut(s)	1420
XapI	RAATTY	7 cut(s)	339, 346, 781, 1039, 1566, 1794, 2259
XbaI	TCTAGA	2 cut(s)	272, 310
XceI	RCATGY	2 cut(s)	2325, 2382
XhoI	CTCGAG	1 cut(s)	1578
XmiI	GTMKAC	3 cut(s)	1196, 1770, 2413
XmnI	GAANNNNTTC	2 cut(s)	1009, 1862
XspI	CTAG	7 cut(s)	273, 311, 740, 1389, 1790, 2045, 2222
ZrmI	AGTACT	1 cut(s)	1152
Zsp2I	ATGCAT	1 cut(s)	2384

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.