Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr4

Orthogroup ID

OG0002964

Physical Location & Seq

Genomic Coordinates Forward (+)

2033667 .. 2033969

Gene Structure 303 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom04g02280.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 303 bp

ATGGTAATATTGGACATTAATACTAGACCAATGGTGGGTGCTGCCATGCTGGTTCAATTGTGGCACCTAAAAGGAGTCCTGCACTTAGGTGCGCGTCAAGGGAGACCTTTAAATTCTATGATTGGTACGAGGAGCAGATTTCATGAAGAATATGAGGAATGTGGGGTGGAGCAGCTAGTCCCGCACCCGCAGCACTATGCTGGGGAAGGAGGATGGCAGGGTGTTCATACGGAGAGTGGCATTTGGTTGACTATTTTTGGGCTTCTTCCATGTGATATTATATTTTTCTTATATACCAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000280 GO:0003674 GO:0003676 GO:0003677 GO:0003824 GO:0004518 GO:0004519 GO:0004520 GO:0004527 GO:0004536 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006281 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007049 GO:0007059 GO:0007127 GO:0007129 GO:0008150 GO:0008152 GO:0008409 GO:0009987 GO:0016043 GO:0016787 GO:0016788 GO:0016888 GO:0016893 GO:0017108 GO:0022402 GO:0022414 GO:0033554 GO:0034641 GO:0036297 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0045132 GO:0045143 GO:0046483 GO:0048256 GO:0048285 GO:0050896 GO:0051276 GO:0051321 GO:0051716 GO:0061982 GO:0070192 GO:0070336 GO:0071704 GO:0071840 GO:0090304 GO:0090305 GO:0097159 GO:0098813 GO:0140013 GO:0140097 GO:1901360 GO:1901363 GO:1903046

KEGG Pathways

Metabolic & Signaling

ko03460 map03460

Pfam Domains

Protein Families

HIRAN VRR_NUC

Protein Analysis

101

Amino Acids

11.31

Weight (kDa)

6.27

Isoelectric Point (pI)

51.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002964)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G48360 AT1G48360 AT1G48360 AT1G48360 AT1G48360 AT1G48360
fragaria_vesca	FvH4_4g12370 FvH4_4g12370 FvH4_4g12370 FvH4_4g12370 FvH4_4g12370 FvH4_4g12370 FvH4_4g12370 FvH4_4g12370
malus_domestica	MD00G1163900.v1.1 MD09G1250200.v1.1 MD09G1250400.v1.1
prunus_persica	Prupe.1G176700_v2.0.a1 Prupe.1G176700_v2.0.a1 Prupe.1G176700_v2.0.a1 Prupe.1G176700_v2.0.a1 Prupe.1G176700_v2.0.a1
pyrus_communis	pycom04g02280 pycom13g29380
rosa_chinensis	RchiOBHm_Chr4g0410481
rosa_laevigata	RLG00000008424
rosa_multiflora	Rmu_sc0001969.1_g000008 Rmu_sc0016181.1_g000004
rosa_roxburghii	Rroxscaffold_5G00355290
rosa_rugosa	Rorug04G0114400
rosa_samantha	Rh4AG160900 Rh4BG160300 Rh4CG173100 Rh4DG156400
rosa_wichuraiana	Rw0G014390 Rw0G014400 Rw4G013420 Rw4G037760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	63
AccII	CGCG	1 cut(s)	94
AciI	CCGC	2 cut(s)	182, 188
AcsI	RAATTY	1 cut(s)	112
AfaI	GTAC	1 cut(s)	127
AfiI	CCNNNNNNNGG	1 cut(s)	35
AgsI	TTSAA	1 cut(s)	56
AleI	CACNNNNGTG	1 cut(s)	87
AluBI	AGCT	1 cut(s)	175
AluI	AGCT	1 cut(s)	175
Alw26I	GTCTC	1 cut(s)	97
ApeKI	GCWGC	3 cut(s)	41, 172, 190
ApoI	RAATTY	1 cut(s)	112
AseI	ATTAAT	1 cut(s)	18
AspLEI	GCGC	1 cut(s)	94
BanI	GGYRCC	1 cut(s)	63
BbvI	GCAGC	3 cut(s)	28, 184, 202
BccI	CCATC	1 cut(s)	207
BcoDI	GTCTC	1 cut(s)	97
BfaI	CTAG	2 cut(s)	24, 176
BisI	GCNGC	3 cut(s)	42, 173, 191
BlsI	GCNGC	3 cut(s)	43, 174, 192
BmiI	GGNNCC	1 cut(s)	65
BsaI	GGTCTC	1 cut(s)	97
Bsc4I	CCNNNNNNNGG	1 cut(s)	35
BseGI	GGATG	1 cut(s)	218
BseLI	CCNNNNNNNGG	1 cut(s)	35
BseRI	GAGGAG	1 cut(s)	145
BseXI	GCAGC	3 cut(s)	28, 184, 202
BseYI	CCCAGC	1 cut(s)	200
BsgI	GTGCAG	1 cut(s)	65
Bsh1236I	CGCG	1 cut(s)	94
BshNI	GGYRCC	1 cut(s)	63
BslFI	GGGAC	1 cut(s)	164
BslI	CCNNNNNNNGG	1 cut(s)	35
BsmAI	GTCTC	1 cut(s)	97
BsmFI	GGGAC	1 cut(s)	164
Bso31I	GGTCTC	1 cut(s)	97
BspACI	CCGC	2 cut(s)	182, 188
BspFNI	CGCG	1 cut(s)	94
BspHI	TCATGA	1 cut(s)	142
BspLI	GGNNCC	1 cut(s)	65
BspT107I	GGYRCC	1 cut(s)	63
BspTNI	GGTCTC	1 cut(s)	97
BstDEI	CTNAG	1 cut(s)	85
BstF5I	GGATG	1 cut(s)	218
BstFNI	CGCG	1 cut(s)	94
BstHHI	GCGC	1 cut(s)	94
BstMAI	GTCTC	1 cut(s)	97
BstMWI	GCNNNNNNNGC	2 cut(s)	181, 190
BstUI	CGCG	1 cut(s)	94
BstV1I	GCAGC	3 cut(s)	28, 184, 202
BtsCI	GGATG	1 cut(s)	218
CciI	TCATGA	1 cut(s)	142
CfoI	GCGC	1 cut(s)	94
CseI	GACGC	1 cut(s)	83
Csp6I	GTAC	1 cut(s)	126
CviAII	CATG	3 cut(s)	46, 143, 270
CviJI	RGCY	2 cut(s)	175, 262
CviKI_1	RGCY	2 cut(s)	175, 262
CviQI	GTAC	1 cut(s)	126
DdeI	CTNAG	1 cut(s)	85
DraI	TTTAAA	1 cut(s)	111
Eco31I	GGTCTC	1 cut(s)	97
FaeI	CATG	3 cut(s)	49, 146, 273
FaqI	GGGAC	1 cut(s)	164
FatI	CATG	3 cut(s)	45, 142, 269
FauI	CCCGC	2 cut(s)	189, 195
Fnu4HI	GCNGC	3 cut(s)	42, 173, 191
FokI	GGATG	1 cut(s)	225
Fsp4HI	GCNGC	3 cut(s)	42, 173, 191
FspBI	CTAG	2 cut(s)	24, 176
GlaI	GCGC	1 cut(s)	93
GluI	GCNGC	3 cut(s)	42, 173, 191
GsaI	CCCAGC	1 cut(s)	204
HgaI	GACGC	1 cut(s)	83
HhaI	GCGC	1 cut(s)	94
Hin1II	CATG	3 cut(s)	49, 146, 273
Hin6I	GCGC	1 cut(s)	92
HinP1I	GCGC	1 cut(s)	92
HincII	GTYRAC	1 cut(s)	249
HindII	GTYRAC	1 cut(s)	249
HinfI	GANTC	1 cut(s)	75
Hpy166II	GTNNAC	1 cut(s)	249
Hpy188III	TCNNGA	1 cut(s)	143
Hpy8I	GTNNAC	1 cut(s)	249
HpyAV	CCTTC	1 cut(s)	200
HpyCH4V	TGCA	1 cut(s)	82
HpyF10VI	GCNNNNNNNGC	2 cut(s)	181, 190
HpyF3I	CTNAG	1 cut(s)	85
Hsp92II	CATG	3 cut(s)	49, 146, 273
HspAI	GCGC	1 cut(s)	92
LmnI	GCTCC	2 cut(s)	132, 169
LpnPI	CCDG	4 cut(s)	35, 92, 186, 203
Lsp1109I	GCAGC	3 cut(s)	28, 184, 202
MaeI	CTAG	2 cut(s)	24, 176
MboII	GAAGA	2 cut(s)	158, 257
MfeI	CAATTG	1 cut(s)	56
MluCI	AATT	2 cut(s)	56, 112
MlyI	GAGTC	1 cut(s)	84
MnlI	CCTC	3 cut(s)	123, 148, 203
MseI	TTAA	2 cut(s)	18, 110
MslI	CAYNNNNRTG	1 cut(s)	87
MunI	CAATTG	1 cut(s)	56
MvnI	CGCG	1 cut(s)	94
MwoI	GCNNNNNNNGC	2 cut(s)	181, 190
NlaIII	CATG	3 cut(s)	49, 146, 273
NlaIV	GGNNCC	1 cut(s)	65
OliI	CACNNNNGTG	1 cut(s)	87
PagI	TCATGA	1 cut(s)	142
PkrI	GCNGC	3 cut(s)	43, 174, 192
PleI	GAGTC	1 cut(s)	83
PpsI	GAGTC	1 cut(s)	83
PshBI	ATTAAT	1 cut(s)	18
PspFI	CCCAGC	1 cut(s)	200
PspN4I	GGNNCC	1 cut(s)	65
RsaI	GTAC	1 cut(s)	127
RsaNI	GTAC	1 cut(s)	126
RseI	CAYNNNNRTG	1 cut(s)	87
SaqAI	TTAA	2 cut(s)	18, 110
SatI	GCNGC	3 cut(s)	42, 173, 191
SchI	GAGTC	1 cut(s)	84
SetI	ASST	4 cut(s)	69, 91, 109, 177
SmiMI	CAYNNNNRTG	1 cut(s)	87
Sse9I	AATT	2 cut(s)	56, 112
SsiI	CCGC	2 cut(s)	182, 188
SspI	AATATT	1 cut(s)	9
SspMI	CTAG	2 cut(s)	24, 176
TasI	AATT	2 cut(s)	56, 112
Tru1I	TTAA	2 cut(s)	18, 110
Tru9I	TTAA	2 cut(s)	18, 110
TseI	GCWGC	3 cut(s)	41, 172, 190
TspDTI	ATGAA	3 cut(s)	131, 159, 215
TspGWI	ACGGA	1 cut(s)	245
VspI	ATTAAT	1 cut(s)	18
XapI	RAATTY	1 cut(s)	112
XspI	CTAG	2 cut(s)	24, 176

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.