Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Contig00646

Orthogroup ID

OG0002964

Physical Location & Seq

Genomic Coordinates Reverse (-)

39747 .. 40640

Gene Structure 894 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw0G014400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 648 bp

ATGCTAAAGGGAAGAGAAAGCTTGAGCCGATTGGTGGGCAAACGCAGGCGCTTCCTTCCCAATCGTCATTCACTCCTCTCTGCCCCTACCACCACCCAGAGCTTATTGAATCTGGATATCGATCCAAATGGCAGACTCGTGTCCCCGGAAGGCTCTTCAAATCAAGACGAACAAGAAAACACACTGGTGGGCTCCGTTGCTTGCCCTGTTTGCAGCGTCAAACTCAGTGCCCAAAACAACACCATCAATTCTCATCTGGATGAGTGTCTATCTAGAGGAACCAAACGAAAGCTAACCCAGCGCACACTTCTAGACCTGAACTTCTGCCCAGTGTCGAAGATTCAAAATTTGAGGGCTGTTGACGAAAGTCAAAATCAGGTTGACAGTCCATCCAGAGAGCCAATCAATAAGGACGAGATCAGTGAGGTGCCGGATTTTGATGTGACCATCACTCAGGACGACATATATGGGGTGATTCTTGAAACTTTTATTGTTGGCCGCAGGTTTGGTGATCAAAATGATTTATGTCTTGGTGCAAGCATTTATCTCTCAAGAGATCCTGATAATGTAAGGATCCTAATGCTATCAAGGTTGTTTATTCAGATTCGGGATGCCTTAAAATGCTTGGCTTTCTCCCTCGCAAGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000280 GO:0003674 GO:0003676 GO:0003677 GO:0003824 GO:0004518 GO:0004519 GO:0004520 GO:0004527 GO:0004536 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006281 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007049 GO:0007059 GO:0007127 GO:0007129 GO:0008150 GO:0008152 GO:0008409 GO:0009987 GO:0016043 GO:0016787 GO:0016788 GO:0016888 GO:0016893 GO:0017108 GO:0022402 GO:0022414 GO:0033554 GO:0034641 GO:0036297 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0045132 GO:0045143 GO:0046483 GO:0048256 GO:0048285 GO:0050896 GO:0051276 GO:0051321 GO:0051716 GO:0061982 GO:0070192 GO:0070336 GO:0071704 GO:0071840 GO:0090304 GO:0090305 GO:0097159 GO:0098813 GO:0140013 GO:0140097 GO:1901360 GO:1901363 GO:1903046

KEGG Pathways

Metabolic & Signaling

ko03460 map03460

Pfam Domains

Protein Families

HIRAN VRR_NUC

Protein Analysis

215

Amino Acids

23.99

Weight (kDa)

6.15

Isoelectric Point (pI)

49.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002964)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G48360 AT1G48360 AT1G48360 AT1G48360 AT1G48360 AT1G48360
fragaria_vesca	FvH4_4g12370 FvH4_4g12370 FvH4_4g12370 FvH4_4g12370 FvH4_4g12370 FvH4_4g12370 FvH4_4g12370 FvH4_4g12370
malus_domestica	MD00G1163900.v1.1 MD09G1250200.v1.1 MD09G1250400.v1.1
prunus_persica	Prupe.1G176700_v2.0.a1 Prupe.1G176700_v2.0.a1 Prupe.1G176700_v2.0.a1 Prupe.1G176700_v2.0.a1 Prupe.1G176700_v2.0.a1
pyrus_communis	pycom04g02280 pycom13g29380
rosa_chinensis	RchiOBHm_Chr4g0410481
rosa_laevigata	RLG00000008424
rosa_multiflora	Rmu_sc0001969.1_g000008 Rmu_sc0016181.1_g000004
rosa_roxburghii	Rroxscaffold_5G00355290
rosa_rugosa	Rorug04G0114400
rosa_samantha	Rh4AG160900 Rh4BG160300 Rh4CG173100 Rh4DG156400
rosa_wichuraiana	Rw0G014390 Rw0G014400 Rw4G013420 Rw4G037760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	492
AccB1I	GGYRCC	1 cut(s)	427
AciI	CCGC	1 cut(s)	499
AclWI	GGATC	4 cut(s)	116, 551, 568, 581
AcoI	YGGCCR	1 cut(s)	496
AcsI	RAATTY	1 cut(s)	346
AfiI	CCNNNNNNNGG	1 cut(s)	34
AgsI	TTSAA	4 cut(s)	109, 159, 344, 482
AleI	CACNNNNGTG	1 cut(s)	185
AluBI	AGCT	4 cut(s)	21, 102, 292, 645
AluI	AGCT	4 cut(s)	21, 102, 292, 645
AlwI	GGATC	4 cut(s)	116, 551, 568, 581
AoxI	GGCC	1 cut(s)	496
ApeKI	GCWGC	1 cut(s)	213
ApoI	RAATTY	1 cut(s)	346
AspLEI	GCGC	2 cut(s)	51, 303
AsuC2I	CCSGG	1 cut(s)	146
AsuHPI	GGTGA	2 cut(s)	484, 521
BaeGI	GKGCMC	1 cut(s)	232
BamHI	GGATCC	1 cut(s)	573
BanI	GGYRCC	1 cut(s)	427
BanII	GRGCYC	1 cut(s)	194
BauI	CACGAG	1 cut(s)	137
BbvI	GCAGC	1 cut(s)	225
BccI	CCATC	3 cut(s)	251, 397, 455
BclI	TGATCA	1 cut(s)	511
BcnI	CCSGG	1 cut(s)	146
BfaI	CTAG	3 cut(s)	273, 311, 646
BfoI	RGCGCY	1 cut(s)	52
BfuAI	ACCTGC	1 cut(s)	492
BisI	GCNGC	2 cut(s)	214, 499
BlsI	GCNGC	2 cut(s)	215, 500
Bme1390I	CCNGG	1 cut(s)	146
BmiI	GGNNCC	4 cut(s)	193, 280, 429, 575
BmrFI	CCNGG	1 cut(s)	146
BmrI	ACTGGG	1 cut(s)	323
BmsI	GCATC	1 cut(s)	601
BmuI	ACTGGG	1 cut(s)	323
BoxI	GACNNNNGTC	2 cut(s)	139, 366
BpuEI	CTTGAG	2 cut(s)	43, 535
BpuMI	CCSGG	1 cut(s)	146
Bsa29I	ATCGAT	1 cut(s)	120
BsaBI	GATNNNNATC	1 cut(s)	120
BsaJI	CCNNGG	1 cut(s)	144
Bsc4I	CCNNNNNNNGG	1 cut(s)	34
Bse1I	ACTGG	2 cut(s)	189, 329
Bse8I	GATNNNNATC	1 cut(s)	120
BseCI	ATCGAT	1 cut(s)	120
BseDI	CCNNGG	1 cut(s)	144
BseGI	GGATG	3 cut(s)	265, 389, 616
BseJI	GATNNNNATC	1 cut(s)	120
BseLI	CCNNNNNNNGG	1 cut(s)	34
BseMII	CTCAG	2 cut(s)	238, 467
BseNI	ACTGG	2 cut(s)	189, 329
BseRI	GAGGAG	1 cut(s)	65
BseSI	GKGCMC	1 cut(s)	232
BseXI	GCAGC	1 cut(s)	225
BseYI	CCCAGC	1 cut(s)	297
BshFI	GGCC	1 cut(s)	498
BshNI	GGYRCC	1 cut(s)	427
BshVI	ATCGAT	1 cut(s)	120
BsiSI	CCGG	2 cut(s)	146, 431
BslFI	GGGAC	1 cut(s)	127
BslI	CCNNNNNNNGG	1 cut(s)	34
BsmFI	GGGAC	1 cut(s)	127
BsnI	GGCC	1 cut(s)	498
Bsp1286I	GDGCHC	2 cut(s)	194, 232
Bsp143I	GATC	5 cut(s)	121, 417, 511, 556, 573
BspACI	CCGC	1 cut(s)	499
BspANI	GGCC	1 cut(s)	498
BspCNI	CTCAG	2 cut(s)	237, 466
BspDI	ATCGAT	1 cut(s)	120
BspLI	GGNNCC	4 cut(s)	193, 280, 429, 575
BspMI	ACCTGC	1 cut(s)	492
BspPI	GGATC	4 cut(s)	116, 551, 568, 581
BspQI	GCTCTTC	1 cut(s)	160
BspT107I	GGYRCC	1 cut(s)	427
BsrI	ACTGG	2 cut(s)	189, 329
BssECI	CCNNGG	1 cut(s)	144
BssMI	GATC	5 cut(s)	121, 417, 511, 556, 573
BssSI	CACGAG	1 cut(s)	137
Bst2BI	CACGAG	1 cut(s)	137
Bst4CI	ACNGT	1 cut(s)	386
Bst6I	CTCTTC	2 cut(s)	7, 160
BstC8I	GCNNGC	4 cut(s)	47, 202, 538, 643
BstDEI	CTNAG	2 cut(s)	224, 453
BstF5I	GGATG	3 cut(s)	265, 389, 616
BstH2I	RGCGCY	1 cut(s)	52
BstHHI	GCGC	2 cut(s)	51, 303
BstKTI	GATC	5 cut(s)	124, 420, 514, 559, 576
BstMBI	GATC	5 cut(s)	121, 417, 511, 556, 573
BstMWI	GCNNNNNNNGC	2 cut(s)	210, 298
BstPAI	GACNNNNGTC	2 cut(s)	139, 366
BstSCI	CCNGG	1 cut(s)	144
BstSLI	GKGCMC	1 cut(s)	232
BstV1I	GCAGC	1 cut(s)	225
BstX2I	RGATCY	2 cut(s)	556, 573
BstYI	RGATCY	2 cut(s)	556, 573
Bsu15I	ATCGAT	1 cut(s)	120
BsuRI	GGCC	1 cut(s)	498
BsuTUI	ATCGAT	1 cut(s)	120
BtsCI	GGATG	3 cut(s)	265, 389, 616
BtsIMutI	CAGTG	4 cut(s)	182, 232, 336, 427
BveI	ACCTGC	1 cut(s)	492
Cac8I	GCNNGC	4 cut(s)	47, 202, 538, 643
CfoI	GCGC	2 cut(s)	51, 303
ClaI	ATCGAT	1 cut(s)	120
CseI	GACGC	1 cut(s)	205
DdeI	CTNAG	2 cut(s)	224, 453
DpnI	GATC	5 cut(s)	123, 419, 513, 558, 575
DpnII	GATC	5 cut(s)	121, 417, 511, 556, 573
EaeI	YGGCCR	1 cut(s)	496
Eam1104I	CTCTTC	2 cut(s)	7, 160
EarI	CTCTTC	2 cut(s)	7, 160
Eco24I	GRGCYC	1 cut(s)	194
Eco32I	GATATC	1 cut(s)	118
EcoRV	GATATC	1 cut(s)	118
EcoT38I	GRGCYC	1 cut(s)	194
FaiI	YATR	4 cut(s)	464, 466, 468, 526
FaqI	GGGAC	1 cut(s)	127
FbaI	TGATCA	1 cut(s)	511
Fnu4HI	GCNGC	2 cut(s)	214, 499
FokI	GGATG	3 cut(s)	272, 376, 623
FriOI	GRGCYC	1 cut(s)	194
Fsp4HI	GCNGC	2 cut(s)	214, 499
FspBI	CTAG	3 cut(s)	273, 311, 646
GlaI	GCGC	2 cut(s)	50, 302
GluI	GCNGC	2 cut(s)	214, 499
GsaI	CCCAGC	1 cut(s)	301
HaeII	RGCGCY	1 cut(s)	52
HaeIII	GGCC	1 cut(s)	498
HapII	CCGG	2 cut(s)	146, 431
HgaI	GACGC	1 cut(s)	205
HhaI	GCGC	2 cut(s)	51, 303
Hin6I	GCGC	2 cut(s)	49, 301
HinP1I	GCGC	2 cut(s)	49, 301
HincII	GTYRAC	2 cut(s)	361, 382
HindII	GTYRAC	2 cut(s)	361, 382
HindIII	AAGCTT	1 cut(s)	19
HinfI	GANTC	5 cut(s)	109, 135, 340, 475, 604
HpaII	CCGG	2 cut(s)	146, 431
HphI	GGTGA	2 cut(s)	484, 521
Hpy166II	GTNNAC	2 cut(s)	361, 382
Hpy188I	TCNGA	1 cut(s)	603
Hpy8I	GTNNAC	2 cut(s)	361, 382
HpyAV	CCTTC	2 cut(s)	65, 143
HpyCH4III	ACNGT	1 cut(s)	386
HpyCH4V	TGCA	2 cut(s)	213, 536
HpyF10VI	GCNNNNNNNGC	2 cut(s)	210, 298
HpyF3I	CTNAG	2 cut(s)	224, 453
HspAI	GCGC	2 cut(s)	49, 301
Ksp22I	TGATCA	1 cut(s)	511
Kzo9I	GATC	5 cut(s)	121, 417, 511, 556, 573
LguI	GCTCTTC	1 cut(s)	160
LmnI	GCTCC	1 cut(s)	197
Lsp1109I	GCAGC	1 cut(s)	225
LweI	GCATC	1 cut(s)	601
MaeI	CTAG	3 cut(s)	273, 311, 646
MaeIII	GTNAC	1 cut(s)	442
MalI	GATC	5 cut(s)	123, 419, 513, 558, 575
MboI	GATC	5 cut(s)	121, 417, 511, 556, 573
MboII	GAAGA	3 cut(s)	24, 147, 349
MflI	RGATCY	2 cut(s)	556, 573
MhlI	GDGCHC	2 cut(s)	194, 232
MluCI	AATT	2 cut(s)	247, 346
MlyI	GAGTC	1 cut(s)	129
MnlI	CCTC	5 cut(s)	86, 269, 345, 418, 647
MseI	TTAA	1 cut(s)	617
MslI	CAYNNNNRTG	2 cut(s)	185, 258
MspI	CCGG	2 cut(s)	146, 431
MspR9I	CCNGG	1 cut(s)	146
MwoI	GCNNNNNNNGC	2 cut(s)	210, 298
NciI	CCSGG	1 cut(s)	146
NdeII	GATC	5 cut(s)	121, 417, 511, 556, 573
NlaIV	GGNNCC	4 cut(s)	193, 280, 429, 575
NmuCI	GTSAC	1 cut(s)	442
OliI	CACNNNNGTG	1 cut(s)	185
PciSI	GCTCTTC	1 cut(s)	160
PfeI	GAWTC	4 cut(s)	109, 340, 475, 604
PkrI	GCNGC	2 cut(s)	215, 500
PleI	GAGTC	1 cut(s)	129
PpsI	GAGTC	1 cut(s)	129
PshAI	GACNNNNGTC	2 cut(s)	139, 366
PspFI	CCCAGC	1 cut(s)	297
PspN4I	GGNNCC	4 cut(s)	193, 280, 429, 575
PsuI	RGATCY	2 cut(s)	556, 573
RseI	CAYNNNNRTG	2 cut(s)	185, 258
SapI	GCTCTTC	1 cut(s)	160
SaqAI	TTAA	1 cut(s)	617
SatI	GCNGC	2 cut(s)	214, 499
Sau3AI	GATC	5 cut(s)	121, 417, 511, 556, 573
SchI	GAGTC	1 cut(s)	129
ScrFI	CCNGG	1 cut(s)	146
SduI	GDGCHC	2 cut(s)	194, 232
SetI	ASST	9 cut(s)	23, 104, 294, 318, 381, 429, 506, 593, 647
SfaNI	GCATC	1 cut(s)	601
SmiMI	CAYNNNNRTG	2 cut(s)	185, 258
SmlI	CTYRAG	2 cut(s)	22, 550
SmoI	CTYRAG	2 cut(s)	22, 550
Sse9I	AATT	2 cut(s)	247, 346
SsiI	CCGC	1 cut(s)	499
SspMI	CTAG	3 cut(s)	273, 311, 646
StyD4I	CCNGG	1 cut(s)	144
TaaI	ACNGT	1 cut(s)	386
TaqI	TCGA	2 cut(s)	120, 335
TasI	AATT	2 cut(s)	247, 346
TauI	GCSGC	1 cut(s)	501
TfiI	GAWTC	4 cut(s)	109, 340, 475, 604
Tru1I	TTAA	1 cut(s)	617
Tru9I	TTAA	1 cut(s)	617
TscAI	CASTG	4 cut(s)	189, 232, 336, 427
TseFI	GTSAC	1 cut(s)	442
TseI	GCWGC	1 cut(s)	213
Tsp45I	GTSAC	1 cut(s)	442
TspGWI	ACGGA	1 cut(s)	184
TspRI	CASTG	4 cut(s)	189, 232, 336, 427
XapI	RAATTY	1 cut(s)	346
XbaI	TCTAGA	2 cut(s)	272, 310
XspI	CTAG	3 cut(s)	273, 311, 646

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.