Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0002964

Physical Location & Seq

Genomic Coordinates Reverse (-)

16052394 .. 16062266

Gene Structure 9873 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g12370.t8

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2871 bp

ATGAGGGGTCCAAGTCTGAAAATGCTCAAGGGAAGAGAGAGCCTGACCCGATTGGTGGGCAAACGCCGGCGCTTCCTTCCCAATCGTCATTCCCTCCTCTCCGCCCCTACCCAGAGCTCGTTGAATCTGGACATGGTTGTGTCAGTGGACGAACAAAGCTCTTCGAATCAACAAGGAGAAGATAACGGTGTGGTGGAAGGCTCCGTTACTTGCCCTGTTTGCGGTGTCAAACTCAGTCCCCAAAACAGCCTCATCAATTCTCATCTAGATGAGTGTCTATCTAGAGGAACCAAACGGAAGCTTACCCAGCGTACTCTTCTAGAGTTGAACTTCTGTCCAGTGTCGAAAATTCAAACTTGTTCCTATGACTCTGAAGAGTTAGGAAAGGACCTATTTCCTGCAGCTCATGATGAGAGCCCTGTACAAGATGTGTCATGGGGGTTGTCTAACTTACCAGCTGTTGAAGAATGTCAAAATCAGGTTGACAATCTGTCCAGAAACCCAATCAATAAAGACGAGATCAGTGATGTGCCAGATTTTGATGTGACCATCACTCAGGACGACATATATGGGGTGACTCTTGAAACTTTTATTGTTGGCCGCAGGTTTGGTGATGAAACCGAGTTATATCTTGGTGCAAGCATTCATCTCTCAAGAGACCCTAATAATGTTAAGGATCCCAATGCTATCAAGGTTTTTCATTCAGATTCAGGATGCCTTAAAGTGCTTGGTTTTCTCCCTCGCAAGCTAGCTGAGTACTTGTCTCCTCTTATAGACCAGTATCGTCTAAATTTTGAGGGATGTGTGACCTCTGTTCCCAAGCATTCTATTGATGTTGTCCCAATACAGATTGTTTGCCACAAGACCAGTGATGCTAATGACTTTAATGATGACAATGTTTTCAAATGTTTATGGAGAAATGCTCAGCAAGTAATTGAATCTACTAAGTCCTGTCCGCCTTGTGCAATAAAATATCAGCATAACTTTTGTGTTTTCATACGTGAGGTTTTGAGAAACAGTTCTCATCTATTGACAGATGATGAAAAGAACTTCATCGAGTCATTTATTTCAATGTCAGATGATAGTCAGAGGCTATTTGTTCGGCTTTATACACGGAAAGGCCCATGGTTTCGGCTCTCTACTATTTCATACCCAGAAGTATTGGATCCCCAAGAAGCAGTGAAAGAGCTATCTGAGACAGGCTATACATATTGCTTTAATGTCACAAATAATCTATCGGATGATGATATAAAGGAGATTCTGGATTTGCTCACTGTATCTGAGCTGCGTGAAATCTTGTGCATTCTTAAGCAGAGTTGCAATCGTGGCCTAAGAAAGCAGGATCTCATTGCATGTCTTATATCTTACAAAGAAGACTTATGCCCATTACTACCTAGTATGGTTTTGCATAGAATAGGATCCTGTGTTAGAATATCTTCAAATGCGGAGTCCCTTATCTGGCGTGCCGAGAGACTTTTCTTCCTGAATGGTGAACAGGATCTGTCGGCATTTCTACTGGTGGATTTGGGAATAGTCAAATATCCAACTTACAAGTGCATAGTCTCACAACAAATTTTCTCATCTCGAGATGACTTGCTTGGCTATGAAGAGGCCATTGAAGTGGCACAAATAGTTGATGAAGCTCTTGATGAAAGCAACACTCGATTGGTCTTAAAGTGCATAAAGATAGCTGATTCCCATTTATCCAATCCGGCCATTGAAGTGGCACAAATAGTTGATGAAGCTCTTGATGAAAGCAACACTCGATTGGTCTTAAAGTGCATAAAGATAGCTGATTCCCATTTATCCAATCCAGTGAAATCCTTGACGTCTGAAGCAATGGCTCCATTCCTTGCCCACTTTTCAGCAACATTTGTCTACTCAAAGGTGGTTTTACTAGGAATTTCTTTTCTTGAGCGTGAGCGTAGGTACAGTGATGCTATCTATTTACTGAAAAGGCTACTGAATTGTTTTGCTCAAGATCGTAGAAGAGGATACTGGACACTACGGTTATCCATTGACTTGGAGCACATGGGTTATTTGAATGAGAGCCTTTTGGTTGCTGAAAAAGGGTTACTAGATGAATGGGTGCGTGCTGGTTCAAGAGTGGCACTTCAAAGGAGAGTCCTTCGCTTGGGAAAACCACCAAGGCGATGGAAAACTCCTAGTTTTGCAGAGTCTGTCAAGAGGAATATCATGGAGGTCAATGTTCAAGGGAGACCTTTAAATTGTGCAATAGGCATGAAGAGCAGGTTTTATGGAGAAGATGGGGAGCAATGTGGTGTAGAGCAACTAGCTCTGCAGTATTATGCTGAGGAAGGTGGATGGCAGGGTGTTCATACAGAAAGTGGCATTTGGCTGACTATTTTTGGACTTCTTATGTGGGATATTATATTTTCCAGTGTACCAGATGTCTTCCGCACCAAATTTCAGACTGCTCCCTTGGATTTGGAGACTGATAGCTTTTATCTAGTGAGAAAGAACCATATCGACTCTCACCTACAGAAAATTCATGATGGTATGGCTGAGGAGATTCTCATCTCTTCATGGGACTTACATGAGGGAACAGCATGTAGAGGAGTTAACTGGAGGCGACATTCCCTTCCTGAGCTTCGTGCAGCTGTTACATGCATCGGTGGCCCATGTGTGGCTGCATTCTGTCGACATCTTGCACAAGATTATCGTAGTTGGTCAAGTGGAATGCCGGATTTACTTCTGTGGCGCTTCCATGGAAAATACAGAGGTGAAGCAAAGCTTGTCGAAGTTAAAGGCCCCAGGGATAAACTCTCTGAACAGCAGCGAGCATGGCTATTGCTTTTAATGGATTGTGGTTTCAATGCTGAGGTCTGTAAAGTGAGCCCTGTTGTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000280 GO:0003674 GO:0003676 GO:0003677 GO:0003824 GO:0004518 GO:0004519 GO:0004520 GO:0004527 GO:0004536 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006281 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007049 GO:0007059 GO:0007127 GO:0007129 GO:0008150 GO:0008152 GO:0008409 GO:0009987 GO:0016043 GO:0016787 GO:0016788 GO:0016888 GO:0016893 GO:0017108 GO:0022402 GO:0022414 GO:0033554 GO:0034641 GO:0036297 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0045132 GO:0045143 GO:0046483 GO:0048256 GO:0048285 GO:0050896 GO:0051276 GO:0051321 GO:0051716 GO:0061982 GO:0070192 GO:0070336 GO:0071704 GO:0071840 GO:0090304 GO:0090305 GO:0097159 GO:0098813 GO:0140013 GO:0140097 GO:1901360 GO:1901363 GO:1903046

KEGG Pathways

Metabolic & Signaling

ko03460 map03460

Pfam Domains

Protein Families

HIRAN VRR_NUC

Protein Analysis

957

Amino Acids

108.32

Weight (kDa)

5.85

Isoelectric Point (pI)

46.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HIRAN	PF08797	31 - 98	1.5e-12	HIRAN domain
FAN1_HTH	PF21315	148 - 225	1.8e-17	FAN1, HTH domain
FAN1_TPR	PF21170	411 - 535	2.7e-12	Fanconi-associated nuclease 1, TPR domain
VRR_NUC	PF08774	662 - 776	3.5e-35	VRR-NUC domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0002964)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G48360 AT1G48360 AT1G48360 AT1G48360 AT1G48360 AT1G48360
fragaria_vesca	FvH4_4g12370 FvH4_4g12370 FvH4_4g12370 FvH4_4g12370 FvH4_4g12370 FvH4_4g12370 FvH4_4g12370 FvH4_4g12370
malus_domestica	MD00G1163900.v1.1 MD09G1250200.v1.1 MD09G1250400.v1.1
prunus_persica	Prupe.1G176700_v2.0.a1 Prupe.1G176700_v2.0.a1 Prupe.1G176700_v2.0.a1 Prupe.1G176700_v2.0.a1 Prupe.1G176700_v2.0.a1
pyrus_communis	pycom04g02280 pycom13g29380
rosa_chinensis	RchiOBHm_Chr4g0410481
rosa_laevigata	RLG00000008424
rosa_multiflora	Rmu_sc0001969.1_g000008 Rmu_sc0016181.1_g000004
rosa_roxburghii	Rroxscaffold_5G00355290
rosa_rugosa	Rorug04G0114400
rosa_samantha	Rh4AG160900 Rh4BG160300 Rh4CG173100 Rh4DG156400
rosa_wichuraiana	Rw0G014390 Rw0G014400 Rw4G013420 Rw4G037760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	1832
Acc36I	ACCTGC	2 cut(s)	594, 2241
AccI	GTMKAC	2 cut(s)	1878, 2662
AciI	CCGC	6 cut(s)	102, 222, 601, 956, 1445, 2419
AclWI	GGATC	8 cut(s)	671, 684, 1160, 1173, 1350, 1413, 1426, 1506
AcoI	YGGCCR	2 cut(s)	598, 1713
AcsI	RAATTY	6 cut(s)	348, 790, 1572, 1902, 2426, 2508
AcuI	CTGAAG	2 cut(s)	393, 1854
AcyI	GRCGYC	1 cut(s)	1829
AfaI	GTAC	5 cut(s)	313, 423, 758, 1931, 2406
AfiI	CCNNNNNNNGG	5 cut(s)	55, 221, 1458, 2134, 2647
AflII	CTTAAG	1 cut(s)	1307
AhdI	GACNNNNNGTC	1 cut(s)	490
AjnI	CCWGG	1 cut(s)	2774
Alw21I	GWGCWC	2 cut(s)	119, 2031
Alw26I	GTCTC	7 cut(s)	651, 768, 1190, 1465, 1567, 2212, 2447
AlwI	GGATC	8 cut(s)	671, 684, 1160, 1173, 1350, 1413, 1426, 1506
AlwNI	CAGNNNCTG	2 cut(s)	1501, 2180
Ama87I	CYCGRG	1 cut(s)	1584
AoxI	GGCC	7 cut(s)	598, 1120, 1327, 1611, 1713, 2638, 2770
ApeKI	GCWGC	5 cut(s)	401, 1285, 2618, 2651, 2797
ApoI	RAATTY	6 cut(s)	348, 790, 1572, 1902, 2426, 2508
ArsI	GACNNNNNNTTYG	2 cut(s)	1433, 1465
Asp700I	GAANNNNTTC	2 cut(s)	1018, 1435
AspLEI	GCGC	2 cut(s)	72, 2724
AspS9I	GGNCC	5 cut(s)	8, 388, 1121, 2639, 2771
AsuHPI	GGTGA	5 cut(s)	586, 623, 1502, 2489, 2756
AsuII	TTCGAA	1 cut(s)	164
AsuNHI	GCTAGC	1 cut(s)	748
AvaI	CYCGRG	1 cut(s)	1584
AvaII	GGWCC	2 cut(s)	8, 388
BamHI	GGATCC	3 cut(s)	676, 1165, 1418
BanII	GRGCYC	3 cut(s)	119, 419, 2861
BbsI	GAAGAC	2 cut(s)	1380, 2407
Bbv12I	GWGCWC	2 cut(s)	119, 2031
BbvCI	CCTCAGC	3 cut(s)	2313, 2526, 2841
BbvI	GCAGC	5 cut(s)	413, 1272, 2630, 2638, 2809
BccI	CCATC	5 cut(s)	557, 2148, 2261, 2319, 2510
BciT130I	CCWGG	1 cut(s)	2776
BciVI	GTATCC	1 cut(s)	1988
BcoDI	GTCTC	7 cut(s)	651, 768, 1190, 1465, 1567, 2212, 2447
BfmI	CTRYAG	3 cut(s)	399, 2300, 2501
BfoI	RGCGCY	2 cut(s)	73, 2725
BfrI	CTTAAG	1 cut(s)	1307
BfuAI	ACCTGC	2 cut(s)	594, 2241
BfuI	GTATCC	1 cut(s)	1988
BisI	GCNGC	6 cut(s)	402, 601, 1286, 2619, 2652, 2798
BlpI	GCTNAGC	1 cut(s)	924
BlsI	GCNGC	6 cut(s)	403, 602, 1287, 2620, 2653, 2799
BmcAI	AGTACT	1 cut(s)	758
Bme1390I	CCNGG	1 cut(s)	2776
Bme18I	GGWCC	2 cut(s)	8, 388
BmeRI	GACNNNNNGTC	1 cut(s)	490
BmeT110I	CYCGRG	1 cut(s)	1584
BmgT120I	GGNCC	5 cut(s)	8, 388, 1121, 2639, 2771
BmiI	GGNNCC	8 cut(s)	9, 202, 289, 678, 1167, 1420, 1845, 2773
BmrFI	CCNGG	1 cut(s)	2776
BmsI	GCATC	4 cut(s)	704, 862, 1927, 2640
BmtI	GCTAGC	1 cut(s)	752
BpiI	GAAGAC	2 cut(s)	1380, 2407
BplI	GAGNNNNNCTC	2 cut(s)	907, 939
BpmI	CTGGAG	1 cut(s)	2608
Bpu10I	CCTNAGC	4 cut(s)	2313, 2526, 2607, 2841
Bpu1102I	GCTNAGC	1 cut(s)	924
Bpu14I	TTCGAA	1 cut(s)	164
BpuEI	CTTGAG	4 cut(s)	11, 637, 1934, 1962
BsaAI	YACGTR	1 cut(s)	1001
BsaBI	GATNNNNATC	1 cut(s)	2537
BsaHI	GRCGYC	1 cut(s)	1829
BsaI	GGTCTC	2 cut(s)	651, 2212
BsaJI	CCNNGG	6 cut(s)	1124, 2147, 2442, 2728, 2774, 2775
Bsc4I	CCNNNNNNNGG	5 cut(s)	55, 221, 1458, 2134, 2647
Bse118I	RCCGGY	1 cut(s)	66
Bse1I	ACTGG	8 cut(s)	338, 778, 867, 1521, 1814, 2003, 2400, 2591
Bse3DI	GCAATG	3 cut(s)	1347, 1845, 2282
Bse8I	GATNNNNATC	1 cut(s)	2537
BseBI	CCWGG	1 cut(s)	2776
BseDI	CCNNGG	6 cut(s)	1124, 2147, 2442, 2728, 2774, 2775
BseGI	GGATG	4 cut(s)	719, 806, 1246, 2330
BseJI	GATNNNNATC	1 cut(s)	2537
BseLI	CCNNNNNNNGG	5 cut(s)	55, 221, 1458, 2134, 2647
BseMI	GCAATG	3 cut(s)	1347, 1845, 2282
BseNI	ACTGG	8 cut(s)	338, 778, 867, 1521, 1814, 2003, 2400, 2591
BseRI	GAGGAG	4 cut(s)	86, 756, 2543, 2592
BseXI	GCAGC	5 cut(s)	413, 1272, 2630, 2638, 2809
BseYI	CCCAGC	1 cut(s)	306
BsgI	GTGCAG	1 cut(s)	2637
BshFI	GGCC	7 cut(s)	600, 1122, 1329, 1613, 1715, 2640, 2772
BsiHKAI	GWGCWC	2 cut(s)	119, 2031
BsiHKCI	CYCGRG	1 cut(s)	1584
BsiSI	CCGG	3 cut(s)	67, 1712, 2705
BslFI	GGGAC	4 cut(s)	222, 824, 1435, 2564
BslI	CCNNNNNNNGG	5 cut(s)	55, 221, 1458, 2134, 2647
BsmAI	GTCTC	7 cut(s)	651, 768, 1190, 1465, 1567, 2212, 2447
BsmFI	GGGAC	4 cut(s)	222, 824, 1435, 2564
BsmI	GAATGC	5 cut(s)	642, 823, 1302, 2654, 2706
BsnI	GGCC	7 cut(s)	600, 1122, 1329, 1613, 1715, 2640, 2772
Bso31I	GGTCTC	2 cut(s)	651, 2212
BsoBI	CYCGRG	1 cut(s)	1584
Bsp119I	TTCGAA	1 cut(s)	164
Bsp1286I	GDGCHC	4 cut(s)	119, 419, 2031, 2861
Bsp1407I	TGTACA	1 cut(s)	421
Bsp143I	GATC	7 cut(s)	519, 676, 1165, 1342, 1418, 1498, 1981
Bsp1720I	GCTNAGC	1 cut(s)	924
Bsp19I	CCATGG	2 cut(s)	1124, 2728
BspACI	CCGC	6 cut(s)	102, 222, 601, 956, 1445, 2419
BspANI	GGCC	7 cut(s)	600, 1122, 1329, 1613, 1715, 2640, 2772
BspHI	TCATGA	2 cut(s)	406, 2512
BspLI	GGNNCC	8 cut(s)	9, 202, 289, 678, 1167, 1420, 1845, 2773
BspMAI	CTGCAG	2 cut(s)	403, 2304
BspMI	ACCTGC	2 cut(s)	594, 2241
BspOI	GCTAGC	1 cut(s)	752
BspPI	GGATC	8 cut(s)	671, 684, 1160, 1173, 1350, 1413, 1426, 1506
BspQI	GCTCTTC	2 cut(s)	166, 2240
BspT104I	TTCGAA	1 cut(s)	164
BspTI	CTTAAG	1 cut(s)	1307
BspTNI	GGTCTC	2 cut(s)	651, 2212
BsrDI	GCAATG	3 cut(s)	1347, 1845, 2282
BsrFI	RCCGGY	1 cut(s)	66
BsrGI	TGTACA	1 cut(s)	421
BsrI	ACTGG	8 cut(s)	338, 778, 867, 1521, 1814, 2003, 2400, 2591
BssAI	RCCGGY	1 cut(s)	66
BssECI	CCNNGG	6 cut(s)	1124, 2147, 2442, 2728, 2774, 2775
BssMI	GATC	7 cut(s)	519, 676, 1165, 1342, 1418, 1498, 1981
BssNI	GRCGYC	1 cut(s)	1829
BssT1I	CCWWGG	4 cut(s)	1124, 2147, 2442, 2728
Bst2UI	CCWGG	1 cut(s)	2776
Bst4CI	ACNGT	5 cut(s)	188, 1019, 1276, 1934, 2010
Bst6I	CTCTTC	8 cut(s)	28, 166, 321, 369, 1602, 1984, 2240, 2548
BstACI	GRCGYC	1 cut(s)	1829
BstAFI	CTTAAG	1 cut(s)	1307
BstAUI	TGTACA	1 cut(s)	421
BstBAI	YACGTR	1 cut(s)	1001
BstBI	TTCGAA	1 cut(s)	164
BstC8I	GCNNGC	7 cut(s)	68, 640, 746, 750, 1464, 2094, 2802
BstDSI	CCRYGG	2 cut(s)	1124, 2728
BstF5I	GGATG	4 cut(s)	719, 806, 1246, 2330
BstH2I	RGCGCY	2 cut(s)	73, 2725
BstHHI	GCGC	2 cut(s)	72, 2724
BstKTI	GATC	7 cut(s)	522, 679, 1168, 1345, 1421, 1501, 1984
BstMAI	GTCTC	7 cut(s)	651, 768, 1190, 1465, 1567, 2212, 2447
BstMBI	GATC	7 cut(s)	519, 676, 1165, 1342, 1418, 1498, 1981
BstMWI	GCNNNNNNNGC	6 cut(s)	219, 307, 1326, 2247, 2637, 2806
BstNI	CCWGG	1 cut(s)	2776
BstNSI	RCATGY	3 cut(s)	1356, 2574, 2631
BstSCI	CCNGG	1 cut(s)	2774
BstSFI	CTRYAG	3 cut(s)	399, 2300, 2501
BstV1I	GCAGC	5 cut(s)	413, 1272, 2630, 2638, 2809
BstV2I	GAAGAC	2 cut(s)	1380, 2407
BstX2I	RGATCY	5 cut(s)	676, 1165, 1342, 1418, 1498
BstXI	CCANNNNNNTGG	4 cut(s)	1621, 1723, 2023, 2154
BstYI	RGATCY	5 cut(s)	676, 1165, 1342, 1418, 1498
BsuI	GTATCC	1 cut(s)	1988
BsuRI	GGCC	7 cut(s)	600, 1122, 1329, 1613, 1715, 2640, 2772
BtgI	CCRYGG	2 cut(s)	1124, 2728
BtgZI	GCGATG	1 cut(s)	2167
BtsCI	GGATG	4 cut(s)	719, 806, 1246, 2330
BtsI	GCAGTG	1 cut(s)	1185
BtsIMutI	CAGTG	9 cut(s)	150, 345, 529, 874, 1185, 1272, 1821, 1939, 2407
BveI	ACCTGC	2 cut(s)	594, 2241
Cac8I	GCNNGC	7 cut(s)	68, 640, 746, 750, 1464, 2094, 2802
CaiI	CAGNNNCTG	2 cut(s)	1501, 2180
CciI	TCATGA	2 cut(s)	406, 2512
CfoI	GCGC	2 cut(s)	72, 2724
Cfr10I	RCCGGY	1 cut(s)	66
Cfr13I	GGNCC	5 cut(s)	8, 388, 1121, 2639, 2771
Csp6I	GTAC	5 cut(s)	312, 422, 757, 1930, 2405
CviQI	GTAC	5 cut(s)	312, 422, 757, 1930, 2405
DpnI	GATC	7 cut(s)	521, 678, 1167, 1344, 1420, 1500, 1983
DpnII	GATC	7 cut(s)	519, 676, 1165, 1342, 1418, 1498, 1981
DraI	TTTAAA	1 cut(s)	2226
DriI	GACNNNNNGTC	1 cut(s)	490
EaeI	YGGCCR	2 cut(s)	598, 1713
Eam1104I	CTCTTC	8 cut(s)	28, 166, 321, 369, 1602, 1984, 2240, 2548
Eam1105I	GACNNNNNGTC	1 cut(s)	490
EarI	CTCTTC	8 cut(s)	28, 166, 321, 369, 1602, 1984, 2240, 2548
EciI	GGCGGA	2 cut(s)	91, 945
Ecl136II	GAGCTC	1 cut(s)	117
Eco130I	CCWWGG	4 cut(s)	1124, 2147, 2442, 2728
Eco24I	GRGCYC	3 cut(s)	119, 419, 2861
Eco31I	GGTCTC	2 cut(s)	651, 2212
Eco47I	GGWCC	2 cut(s)	8, 388
Eco53kI	GAGCTC	1 cut(s)	117
Eco57I	CTGAAG	2 cut(s)	393, 1854
Eco88I	CYCGRG	1 cut(s)	1584
EcoICRI	GAGCTC	1 cut(s)	117
EcoO109I	RGGNCCY	2 cut(s)	388, 2771
EcoRII	CCWGG	1 cut(s)	2774
EcoT14I	CCWWGG	4 cut(s)	1124, 2147, 2442, 2728
EcoT22I	ATGCAT	1 cut(s)	2633
EcoT38I	GRGCYC	3 cut(s)	119, 419, 2861
ErhI	CCWWGG	4 cut(s)	1124, 2147, 2442, 2728
FalI	AAGNNNNNCTT	2 cut(s)	2739, 2771
FaqI	GGGAC	4 cut(s)	222, 824, 1435, 2564
FblI	GTMKAC	2 cut(s)	1878, 2662
Fnu4HI	GCNGC	6 cut(s)	402, 601, 1286, 2619, 2652, 2798
FokI	GGATG	4 cut(s)	726, 813, 1253, 2337
FriOI	GRGCYC	3 cut(s)	119, 419, 2861
Fsp4HI	GCNGC	6 cut(s)	402, 601, 1286, 2619, 2652, 2798
GlaI	GCGC	2 cut(s)	71, 2723
GluI	GCNGC	6 cut(s)	402, 601, 1286, 2619, 2652, 2798
GsaI	CCCAGC	1 cut(s)	310
GsuI	CTGGAG	1 cut(s)	2608
HaeII	RGCGCY	2 cut(s)	73, 2725
HaeIII	GGCC	7 cut(s)	600, 1122, 1329, 1613, 1715, 2640, 2772
HapII	CCGG	3 cut(s)	67, 1712, 2705
HhaI	GCGC	2 cut(s)	72, 2724
Hin1I	GRCGYC	1 cut(s)	1829
Hin6I	GCGC	2 cut(s)	70, 2722
HinP1I	GCGC	2 cut(s)	70, 2722
HincII	GTYRAC	3 cut(s)	484, 2584, 2663
HindII	GTYRAC	3 cut(s)	484, 2584, 2663
HindIII	AAGCTT	2 cut(s)	299, 2753
HpaI	GTTAAC	1 cut(s)	2584
HpaII	CCGG	3 cut(s)	67, 1712, 2705
HphI	GGTGA	5 cut(s)	586, 623, 1502, 2489, 2756
Hpy166II	GTNNAC	7 cut(s)	148, 484, 1493, 1879, 2405, 2584, 2663
Hpy8I	GTNNAC	7 cut(s)	148, 484, 1493, 1879, 2405, 2584, 2663
HpyAV	CCTTC	5 cut(s)	86, 191, 2138, 2312, 2612
HpyCH4III	ACNGT	5 cut(s)	188, 1019, 1276, 1934, 2010
HpyCH4IV	ACGT	2 cut(s)	1000, 1829
HpyF10VI	GCNNNNNNNGC	6 cut(s)	219, 307, 1326, 2247, 2637, 2806
HpySE526I	ACGT	2 cut(s)	1000, 1829
Hsp92I	GRCGYC	1 cut(s)	1829
HspAI	GCGC	2 cut(s)	70, 2722
KroI	GCCGGC	1 cut(s)	66
KroNI	GCCGGC	1 cut(s)	68
KspAI	GTTAAC	1 cut(s)	2584
Kzo9I	GATC	7 cut(s)	519, 676, 1165, 1342, 1418, 1498, 1981
LguI	GCTCTTC	2 cut(s)	166, 2240
LmnI	GCTCC	5 cut(s)	206, 1849, 2026, 2272, 2443
Lsp1109I	GCAGC	5 cut(s)	413, 1272, 2630, 2638, 2809
LweI	GCATC	4 cut(s)	704, 862, 1927, 2640
MaeII	ACGT	2 cut(s)	1000, 1829
MaeIII	GTNAC	7 cut(s)	205, 544, 574, 805, 1222, 2073, 2623
MalI	GATC	7 cut(s)	521, 678, 1167, 1344, 1420, 1500, 1983
MboI	GATC	7 cut(s)	519, 676, 1165, 1342, 1418, 1498, 1981
MflI	RGATCY	5 cut(s)	676, 1165, 1342, 1418, 1498
MhlI	GDGCHC	4 cut(s)	119, 419, 2031, 2861
MlyI	GAGTC	7 cut(s)	362, 571, 1067, 1457, 2133, 2186, 2486
MmeI	TCCRAC	1 cut(s)	1568
Mph1103I	ATGCAT	1 cut(s)	2633
MreI	CGCCGGCG	1 cut(s)	66
MroNI	GCCGGC	1 cut(s)	66
MroXI	GAANNNNTTC	2 cut(s)	1018, 1435
MslI	CAYNNNNRTG	4 cut(s)	137, 267, 1619, 1721
MspA1I	CMGCKG	2 cut(s)	458, 2621
MspCI	CTTAAG	1 cut(s)	1307
MspI	CCGG	3 cut(s)	67, 1712, 2705
MspR9I	CCNGG	1 cut(s)	2776
Mva1269I	GAATGC	5 cut(s)	642, 823, 1302, 2654, 2706
MvaI	CCWGG	1 cut(s)	2776
MwoI	GCNNNNNNNGC	6 cut(s)	219, 307, 1326, 2247, 2637, 2806
NaeI	GCCGGC	1 cut(s)	68
NcoI	CCATGG	2 cut(s)	1124, 2728
NdeII	GATC	7 cut(s)	519, 676, 1165, 1342, 1418, 1498, 1981
NgoMIV	GCCGGC	1 cut(s)	66
NheI	GCTAGC	1 cut(s)	748
NlaIV	GGNNCC	8 cut(s)	9, 202, 289, 678, 1167, 1420, 1845, 2773
NmeAIII	GCCGAG	1 cut(s)	1492
NmuCI	GTSAC	4 cut(s)	544, 574, 805, 1222
NsiI	ATGCAT	1 cut(s)	2633
NspI	RCATGY	3 cut(s)	1356, 2574, 2631
NspV	TTCGAA	1 cut(s)	164
PaeR7I	CTCGAG	1 cut(s)	1584
PagI	TCATGA	2 cut(s)	406, 2512
PasI	CCCWGGG	1 cut(s)	2775
PciSI	GCTCTTC	2 cut(s)	166, 2240
PctI	GAATGC	5 cut(s)	642, 823, 1302, 2654, 2706
PdiI	GCCGGC	1 cut(s)	68
PdmI	GAANNNNTTC	2 cut(s)	1018, 1435
PfeI	GAWTC	8 cut(s)	124, 166, 707, 938, 1258, 1694, 1796, 2533
PkrI	GCNGC	6 cut(s)	403, 602, 1287, 2620, 2653, 2799
PleI	GAGTC	7 cut(s)	362, 571, 1066, 1456, 2132, 2185, 2486
PpsI	GAGTC	7 cut(s)	362, 571, 1066, 1456, 2132, 2185, 2486
Ppu21I	YACGTR	1 cut(s)	1001
PpuMI	RGGWCCY	1 cut(s)	388
Psp124BI	GAGCTC	1 cut(s)	119
Psp5II	RGGWCCY	1 cut(s)	388
Psp6I	CCWGG	1 cut(s)	2774
PspFI	CCCAGC	1 cut(s)	306
PspGI	CCWGG	1 cut(s)	2774
PspN4I	GGNNCC	8 cut(s)	9, 202, 289, 678, 1167, 1420, 1845, 2773
PspPI	GGNCC	5 cut(s)	8, 388, 1121, 2639, 2771
PspPPI	RGGWCCY	1 cut(s)	388
PstI	CTGCAG	2 cut(s)	403, 2304
PstNI	CAGNNNCTG	2 cut(s)	1501, 2180
PsuI	RGATCY	5 cut(s)	676, 1165, 1342, 1418, 1498
PvuII	CAGCTG	2 cut(s)	458, 2621
RsaI	GTAC	5 cut(s)	313, 423, 758, 1931, 2406
RsaNI	GTAC	5 cut(s)	312, 422, 757, 1930, 2405
RseI	CAYNNNNRTG	4 cut(s)	137, 267, 1619, 1721
SacI	GAGCTC	1 cut(s)	119
SalI	GTCGAC	1 cut(s)	2661
SapI	GCTCTTC	2 cut(s)	166, 2240
SatI	GCNGC	6 cut(s)	402, 601, 1286, 2619, 2652, 2798
Sau3AI	GATC	7 cut(s)	519, 676, 1165, 1342, 1418, 1498, 1981
Sau96I	GGNCC	5 cut(s)	8, 388, 1121, 2639, 2771
ScaI	AGTACT	1 cut(s)	758
SchI	GAGTC	7 cut(s)	362, 571, 1067, 1457, 2133, 2186, 2486
ScrFI	CCNGG	1 cut(s)	2776
SduI	GDGCHC	4 cut(s)	119, 419, 2031, 2861
SfaNI	GCATC	4 cut(s)	704, 862, 1927, 2640
SfcI	CTRYAG	3 cut(s)	399, 2300, 2501
Sfr274I	CTCGAG	1 cut(s)	1584
SfuI	TTCGAA	1 cut(s)	164
SgrAI	CRCCGGYG	1 cut(s)	66
SinI	GGWCC	2 cut(s)	8, 388
SlaI	CTCGAG	1 cut(s)	1584
SmiMI	CAYNNNNRTG	4 cut(s)	137, 267, 1619, 1721
SmlI	CTYRAG	6 cut(s)	26, 652, 1307, 1584, 1913, 1977
SmoI	CTYRAG	6 cut(s)	26, 652, 1307, 1584, 1913, 1977
SsiI	CCGC	6 cut(s)	102, 222, 601, 956, 1445, 2419
SstI	GAGCTC	1 cut(s)	119
StyD4I	CCNGG	1 cut(s)	2774
StyI	CCWWGG	4 cut(s)	1124, 2147, 2442, 2728
TaaI	ACNGT	5 cut(s)	188, 1019, 1276, 1934, 2010
TaiI	ACGT	2 cut(s)	1003, 1832
TaqI	TCGA	9 cut(s)	164, 344, 1056, 1585, 1663, 1765, 2490, 2662, 2760
TatI	WGTACW	2 cut(s)	421, 756
TauI	GCSGC	1 cut(s)	603
TfiI	GAWTC	8 cut(s)	124, 166, 707, 938, 1258, 1694, 1796, 2533
TscAI	CASTG	9 cut(s)	150, 345, 529, 874, 1185, 1279, 1821, 1939, 2407
TseFI	GTSAC	4 cut(s)	544, 574, 805, 1222
TseI	GCWGC	5 cut(s)	401, 1285, 2618, 2651, 2797
Tsp45I	GTSAC	4 cut(s)	544, 574, 805, 1222
TspGWI	ACGGA	3 cut(s)	193, 310, 1129
TspRI	CASTG	9 cut(s)	150, 345, 529, 874, 1185, 1279, 1821, 1939, 2407
Vha464I	CTTAAG	1 cut(s)	1307
VpaK11BI	GGWCC	2 cut(s)	8, 388
XapI	RAATTY	6 cut(s)	348, 790, 1572, 1902, 2426, 2508
XbaI	TCTAGA	3 cut(s)	265, 281, 319
XceI	RCATGY	3 cut(s)	1356, 2574, 2631
XcmI	CCANNNNNNNNNTGG	1 cut(s)	2151
XhoI	CTCGAG	1 cut(s)	1584
XmiI	GTMKAC	2 cut(s)	1878, 2662
XmnI	GAANNNNTTC	2 cut(s)	1018, 1435
ZraI	GACGTC	1 cut(s)	1830
ZrmI	AGTACT	1 cut(s)	758
Zsp2I	ATGCAT	1 cut(s)	2633

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.