Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001969.1

Orthogroup ID

OG0002964

Physical Location & Seq

Genomic Coordinates Forward (+)

31490 .. 40301

Gene Structure 8812 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001969.1_g000008.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2754 bp

atgctaaagggaagagaaagcttgagccgattggtgggcaaacgcaggcgcttccttcccaatcgtcattcactcctctccgcccctatcaccacccagagcttattgaatctggatatcgatccaaatggcagactcgtgtccctggaaggctcttcaaatcaagacgaacaagaaaacacactggtgggctccgttgcttgccctgtttgcagcgtcaagctcagtgcccaaaacaacaccatcaattctcatctggatgagtgtctatctagaggaaccaaacgaaagctaacccagcgcacacttctagagctgaacttctgcccagtgtcgaaaattcaaaatttttcctgtgactctaaacagttgggaaatgatttatttcatgatgagagtcatgtacaagatgcgtcgtgggggttgtctaacttgaggcctgttgacgatagtcaaaatcaggttgacagtccatccagagacacaatcaataaggacgagatcagtgaggtgccggattttgatgtgaccatcactcaggacgacatatatggggtgattcttgaaactttcattgttggccgcaggtttggtgatcaaactgatttatatcttggtgcaagcatttatctctcaagagatcctgataatgttaaggatcctaatgctatcaaggttgtttattcagattcgggatgccttaaaatgcttggctttctccctcgcaagctagctgagtatttgtctcctctgatagaccagtatggtctaaattttgagggatgcgttacctctgttcccaaacgttctattgatgttgtcccaatacagatagtgtgtcacaagaccagtgataataaggactttaatgatgacaaggttttcaaatgtttatggagaaatgctctgcaagtaattgaatctacaaagtcctgtccgcccagtgcaataaaatatcaggataacttttgtgttttcatacgtgaggttttgagaaacagttctcacctcttgacagatgatgaaaagaatttcatcaagtcatttacttcaatgtcagatgatagtcagaggctatttgttcggctttatacacggaaaggcccatggtttcggctgtctgctatttcatacccagaagtactggatccccaacaagcagtgaaagagctatctgagacagggtatgcatcttgctttgaaattacaaataaactatctgatgattgtattaaggagattttggatttgctcactgtatctgagctacgtgaaatcttgtgcatccttaagcagagttgcaaacgtggcctaagaaagcaggatctcattgcatctcttatatcttcttacgatgaagatttgtgcccattactacctagtatggttttgcacagaacaggatcctgtattaggatatcttcaaatgcggagtcccttatctggcgtgctgagaggcttttcttcctgaatggtgaacaggatctctcggcatttctactggtggatttgggaatagtcaagtatccaacttacaagtgcatggtctcacaacaaattttctcagctcgagatgatttacttggctatgaagaggctattgaagtggcacaaatagttgatgaagctcttgatggaagcaacactggattggtcttaaagtgcataaagatagctgattcccatttatccaatccggttcaatccttgacctctgaatcaatggctccattcctttcccacttttcagctacatttgtctactcaaaagtggttttactaggaatttcttttcttgagcgtgagcacaggtacaatgatgctatctatttactgaaaaggctgctgaattgtttcgctcgtgatggtagaagaggatactggacactacggttatcaattgatttggagcacatgggctatctgaatgagagccttttggttgctgaaaatgggttactagatgaatgggtgcgtgctggttcaagagtggcacttcaaaggagagtccttcgcttgggaaaaccaccgaggcgatggaaaactcctagttttgcagagtctgtcaagaggaagatcatggaggtaaatgttccagggagacctttaaattgtgcaattggcacaaagagcaggttttatggagaagatggggagcaatgcggtgtagagctgctagctctgcaatattatgccgaggaaggtggatggcagggtgttcatacagagagtggcatttggttgactatttttggacttcttatgtgggatattatattttccaatgtaccaaatgtcttccgcaccagatttcagaccgctcccttggatttagagactgatagcttttatctagtgagaaagaaccatatcgagtctcacctacagaaaattcttgatggcatggctgaagagattctcatcacttcatgggagttacatgagggaacagcatgtcgaggagttaactgggggcgacattccctctctgagcttcgggcagctgttacatgcatcggtggcccatgtgtggctgcattttgtcgacatcttgcacaagattatcgtagttggtcaagtggaatgccagatttacttctgtggcgcttccatgggaaatacagaggtgaagcgaagcttgttgaagttaaaggccccagggatagactctctgaacagcagcgagcatggctattgcttttaatggattgtgggttcaatgccgaggtctgtaaagtgagccctattgtctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000280 GO:0003674 GO:0003676 GO:0003677 GO:0003824 GO:0004518 GO:0004519 GO:0004520 GO:0004527 GO:0004536 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006281 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007049 GO:0007059 GO:0007127 GO:0007129 GO:0008150 GO:0008152 GO:0008409 GO:0009987 GO:0016043 GO:0016787 GO:0016788 GO:0016888 GO:0016893 GO:0017108 GO:0022402 GO:0022414 GO:0033554 GO:0034641 GO:0036297 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0045132 GO:0045143 GO:0046483 GO:0048256 GO:0048285 GO:0050896 GO:0051276 GO:0051321 GO:0051716 GO:0061982 GO:0070192 GO:0070336 GO:0071704 GO:0071840 GO:0090304 GO:0090305 GO:0097159 GO:0098813 GO:0140013 GO:0140097 GO:1901360 GO:1901363 GO:1903046

KEGG Pathways

Metabolic & Signaling

ko03460 map03460

Pfam Domains

Protein Families

HIRAN VRR_NUC

Protein Analysis

917

Amino Acids

103.78

Weight (kDa)

6.06

Isoelectric Point (pI)

45.17

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002964)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G48360 AT1G48360 AT1G48360 AT1G48360 AT1G48360 AT1G48360
fragaria_vesca	FvH4_4g12370 FvH4_4g12370 FvH4_4g12370 FvH4_4g12370 FvH4_4g12370 FvH4_4g12370 FvH4_4g12370 FvH4_4g12370
malus_domestica	MD00G1163900.v1.1 MD09G1250200.v1.1 MD09G1250400.v1.1
prunus_persica	Prupe.1G176700_v2.0.a1 Prupe.1G176700_v2.0.a1 Prupe.1G176700_v2.0.a1 Prupe.1G176700_v2.0.a1 Prupe.1G176700_v2.0.a1
pyrus_communis	pycom04g02280 pycom13g29380
rosa_chinensis	RchiOBHm_Chr4g0410481
rosa_laevigata	RLG00000008424
rosa_multiflora	Rmu_sc0001969.1_g000008 Rmu_sc0016181.1_g000004
rosa_roxburghii	Rroxscaffold_5G00355290
rosa_rugosa	Rorug04G0114400
rosa_samantha	Rh4AG160900 Rh4BG160300 Rh4CG173100 Rh4DG156400
rosa_wichuraiana	Rw0G014390 Rw0G014400 Rw4G013420 Rw4G037760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	576, 2124
AccB1I	GGYRCC	1 cut(s)	511
AccBSI	CCGCTC	1 cut(s)	2321
AccI	GTMKAC	2 cut(s)	1761, 2545
AciI	CCGC	7 cut(s)	81, 583, 938, 1430, 2163, 2302, 2319
AclI	AACGTT	1 cut(s)	805
AcoI	YGGCCR	1 cut(s)	580
AcsI	RAATTY	7 cut(s)	339, 346, 772, 1030, 1557, 1785, 2391
AcuI	CTGAAG	1 cut(s)	2430
AfaI	GTAC	4 cut(s)	405, 1143, 1814, 2289
AfiI	CCNNNNNNNGG	5 cut(s)	34, 1413, 1443, 2017, 2530
AflII	CTTAAG	1 cut(s)	1289
AjnI	CCWGG	3 cut(s)	144, 2095, 2657
AleI	CACNNNNGTG	1 cut(s)	185
AloI	GAACNNNNNNTCC	2 cut(s)	2699, 2731
Alw21I	GWGCWC	2 cut(s)	1809, 1914
Alw26I	GTCTC	7 cut(s)	474, 750, 1172, 1552, 2095, 2330, 2382
AlwNI	CAGNNNCTG	1 cut(s)	2063
Ama87I	CYCGRG	1 cut(s)	1569
AoxI	GGCC	6 cut(s)	437, 580, 1102, 1309, 2521, 2653
ApeKI	GCWGC	6 cut(s)	213, 1843, 2173, 2501, 2534, 2680
ApoI	RAATTY	7 cut(s)	339, 346, 772, 1030, 1557, 1785, 2391
ArsI	GACNNNNNNTTYG	2 cut(s)	1418, 1450
Asp700I	GAANNNNTTC	3 cut(s)	1000, 1853, 2415
AspLEI	GCGC	3 cut(s)	51, 303, 2607
AspS9I	GGNCC	3 cut(s)	1103, 2522, 2654
AsuHPI	GGTGA	7 cut(s)	82, 568, 605, 998, 1487, 2372, 2639
AsuNHI	GCTAGC	2 cut(s)	730, 2176
AvaI	CYCGRG	1 cut(s)	1569
BaeGI	GKGCMC	2 cut(s)	232, 1370
BamHI	GGATCC	3 cut(s)	658, 1147, 1403
BanI	GGYRCC	1 cut(s)	511
BanII	GRGCYC	2 cut(s)	194, 2744
BauI	CACGAG	2 cut(s)	137, 1860
BbsI	GAAGAC	1 cut(s)	2290
Bbv12I	GWGCWC	2 cut(s)	1809, 1914
BbvI	GCAGC	6 cut(s)	225, 1830, 2160, 2513, 2521, 2692
BccI	CCATC	9 cut(s)	251, 481, 539, 1628, 1859, 2031, 2144, 2202, 2393
BciT130I	CCWGG	3 cut(s)	146, 2097, 2659
BciVI	GTATCC	2 cut(s)	1536, 1871
BclI	TGATCA	1 cut(s)	595
BcoDI	GTCTC	7 cut(s)	474, 750, 1172, 1552, 2095, 2330, 2382
BfaI	CTAG	9 cut(s)	273, 311, 731, 1380, 1781, 1961, 2049, 2177, 2354
BfmI	CTRYAG	1 cut(s)	2384
BfoI	RGCGCY	2 cut(s)	52, 2608
BfrI	CTTAAG	1 cut(s)	1289
BfuAI	ACCTGC	2 cut(s)	576, 2124
BfuI	GTATCC	2 cut(s)	1536, 1871
BisI	GCNGC	7 cut(s)	214, 583, 1844, 2174, 2502, 2535, 2681
BlsI	GCNGC	7 cut(s)	215, 584, 1845, 2175, 2503, 2536, 2682
BmcAI	AGTACT	1 cut(s)	1143
Bme1390I	CCNGG	3 cut(s)	146, 2097, 2659
BmeT110I	CYCGRG	1 cut(s)	1569
BmgT120I	GGNCC	3 cut(s)	1103, 2522, 2654
BmiI	GGNNCC	8 cut(s)	193, 280, 513, 660, 1149, 1405, 1728, 2656
BmrFI	CCNGG	3 cut(s)	146, 2097, 2659
BmrI	ACTGGG	3 cut(s)	323, 936, 2479
BmsI	GCATC	8 cut(s)	400, 686, 773, 1199, 1293, 1343, 1810, 2523
BmtI	GCTAGC	2 cut(s)	734, 2180
BmuI	ACTGGG	3 cut(s)	323, 936, 2479
BoxI	GACNNNNGTC	2 cut(s)	139, 450
BpiI	GAAGAC	1 cut(s)	2290
BplI	GAGNNNNNCTC	2 cut(s)	889, 921
BpuEI	CTTGAG	4 cut(s)	43, 454, 619, 1817
Bsa29I	ATCGAT	1 cut(s)	120
BsaAI	YACGTR	2 cut(s)	983, 1271
BsaBI	GATNNNNATC	3 cut(s)	120, 609, 2420
BsaI	GGTCTC	2 cut(s)	1552, 2095
BsaWI	WCCGGW	1 cut(s)	1696
Bsc4I	CCNNNNNNNGG	5 cut(s)	34, 1413, 1443, 2017, 2530
Bse3DI	GCAATG	2 cut(s)	1329, 2165
Bse8I	GATNNNNATC	3 cut(s)	120, 609, 2420
BseBI	CCWGG	3 cut(s)	146, 2097, 2659
BseCI	ATCGAT	1 cut(s)	120
BseGI	GGATG	6 cut(s)	265, 473, 701, 788, 1284, 2213
BseJI	GATNNNNATC	3 cut(s)	120, 609, 2420
BseLI	CCNNNNNNNGG	5 cut(s)	34, 1413, 1443, 2017, 2530
BseMI	GCAATG	2 cut(s)	1329, 2165
BseMII	CTCAG	8 cut(s)	238, 551, 726, 1167, 1254, 1443, 1578, 2481
BseRI	GAGGAG	3 cut(s)	65, 738, 2475
BseSI	GKGCMC	2 cut(s)	232, 1370
BseXI	GCAGC	6 cut(s)	225, 1830, 2160, 2513, 2521, 2692
BseYI	CCCAGC	1 cut(s)	297
BshFI	GGCC	6 cut(s)	439, 582, 1104, 1311, 2523, 2655
BshNI	GGYRCC	1 cut(s)	511
BshVI	ATCGAT	1 cut(s)	120
BsiHKAI	GWGCWC	2 cut(s)	1809, 1914
BsiHKCI	CYCGRG	1 cut(s)	1569
BsiSI	CCGG	2 cut(s)	515, 1697
BslFI	GGGAC	3 cut(s)	127, 806, 1420
BslI	CCNNNNNNNGG	5 cut(s)	34, 1413, 1443, 2017, 2530
BsmAI	GTCTC	7 cut(s)	474, 750, 1172, 1552, 2095, 2330, 2382
BsmFI	GGGAC	3 cut(s)	127, 806, 1420
BsmI	GAATGC	1 cut(s)	2589
BsnI	GGCC	6 cut(s)	439, 582, 1104, 1311, 2523, 2655
Bso31I	GGTCTC	2 cut(s)	1552, 2095
BsoBI	CYCGRG	1 cut(s)	1569
Bsp1286I	GDGCHC	6 cut(s)	194, 232, 1370, 1809, 1914, 2744
Bsp1407I	TGTACA	1 cut(s)	403
Bsp19I	CCATGG	2 cut(s)	1106, 2611
BspACI	CCGC	7 cut(s)	81, 583, 938, 1430, 2163, 2302, 2319
BspANI	GGCC	6 cut(s)	439, 582, 1104, 1311, 2523, 2655
BspCNI	CTCAG	8 cut(s)	237, 550, 727, 1168, 1255, 1444, 1577, 2482
BspDI	ATCGAT	1 cut(s)	120
BspHI	TCATGA	1 cut(s)	388
BspLI	GGNNCC	8 cut(s)	193, 280, 513, 660, 1149, 1405, 1728, 2656
BspMI	ACCTGC	2 cut(s)	576, 2124
BspOI	GCTAGC	2 cut(s)	734, 2180
BspQI	GCTCTTC	1 cut(s)	160
BspT107I	GGYRCC	1 cut(s)	511
BspTI	CTTAAG	1 cut(s)	1289
BspTNI	GGTCTC	2 cut(s)	1552, 2095
BsrBI	CCGCTC	1 cut(s)	2321
BsrDI	GCAATG	2 cut(s)	1329, 2165
BsrGI	TGTACA	1 cut(s)	403
BssSI	CACGAG	2 cut(s)	137, 1860
BssT1I	CCWWGG	3 cut(s)	1106, 2325, 2611
Bst2BI	CACGAG	2 cut(s)	137, 1860
Bst2UI	CCWGG	3 cut(s)	146, 2097, 2659
Bst4CI	ACNGT	5 cut(s)	369, 470, 1001, 1258, 1893
Bst6I	CTCTTC	5 cut(s)	7, 160, 1587, 1867, 2406
BstAFI	CTTAAG	1 cut(s)	1289
BstAUI	TGTACA	1 cut(s)	403
BstBAI	YACGTR	2 cut(s)	983, 1271
BstC8I	GCNNGC	9 cut(s)	47, 202, 622, 728, 732, 1449, 1977, 2178, 2685
BstDEI	CTNAG	9 cut(s)	224, 537, 735, 1176, 1263, 1313, 1452, 1564, 2490
BstDSI	CCRYGG	2 cut(s)	1106, 2611
BstENI	CCTNNNNNAGG	1 cut(s)	1411
BstF5I	GGATG	6 cut(s)	265, 473, 701, 788, 1284, 2213
BstH2I	RGCGCY	2 cut(s)	52, 2608
BstHHI	GCGC	3 cut(s)	51, 303, 2607
BstMAI	GTCTC	7 cut(s)	474, 750, 1172, 1552, 2095, 2330, 2382
BstMWI	GCNNNNNNNGC	7 cut(s)	210, 298, 1308, 2130, 2182, 2520, 2689
BstNI	CCWGG	3 cut(s)	146, 2097, 2659
BstNSI	RCATGY	2 cut(s)	2457, 2514
BstPAI	GACNNNNGTC	2 cut(s)	139, 450
BstSCI	CCNGG	3 cut(s)	144, 2095, 2657
BstSFI	CTRYAG	1 cut(s)	2384
BstSLI	GKGCMC	2 cut(s)	232, 1370
BstV1I	GCAGC	6 cut(s)	225, 1830, 2160, 2513, 2521, 2692
BstV2I	GAAGAC	1 cut(s)	2290
BstX2I	RGATCY	6 cut(s)	640, 658, 1147, 1324, 1403, 1483
BstYI	RGATCY	6 cut(s)	640, 658, 1147, 1324, 1403, 1483
Bsu15I	ATCGAT	1 cut(s)	120
BsuI	GTATCC	2 cut(s)	1536, 1871
BsuRI	GGCC	6 cut(s)	439, 582, 1104, 1311, 2523, 2655
BsuTUI	ATCGAT	1 cut(s)	120
BtgI	CCRYGG	2 cut(s)	1106, 2611
BtgZI	GCGATG	1 cut(s)	2050
BtsCI	GGATG	6 cut(s)	265, 473, 701, 788, 1284, 2213
BtsI	GCAGTG	1 cut(s)	1167
BtsIMutI	CAGTG	9 cut(s)	182, 232, 336, 511, 856, 949, 1167, 1254, 1644
BveI	ACCTGC	2 cut(s)	576, 2124
Cac8I	GCNNGC	9 cut(s)	47, 202, 622, 728, 732, 1449, 1977, 2178, 2685
CaiI	CAGNNNCTG	1 cut(s)	2063
CciI	TCATGA	1 cut(s)	388
CfoI	GCGC	3 cut(s)	51, 303, 2607
Cfr13I	GGNCC	3 cut(s)	1103, 2522, 2654
ClaI	ATCGAT	1 cut(s)	120
CseI	GACGC	2 cut(s)	205, 402
Csp6I	GTAC	4 cut(s)	404, 1142, 1813, 2288
CviQI	GTAC	4 cut(s)	404, 1142, 1813, 2288
DdeI	CTNAG	9 cut(s)	224, 537, 735, 1176, 1263, 1313, 1452, 1564, 2490
DraI	TTTAAA	1 cut(s)	2109
EaeI	YGGCCR	1 cut(s)	580
Eam1104I	CTCTTC	5 cut(s)	7, 160, 1587, 1867, 2406
EarI	CTCTTC	5 cut(s)	7, 160, 1587, 1867, 2406
EciI	GGCGGA	2 cut(s)	70, 927
Eco130I	CCWWGG	3 cut(s)	1106, 2325, 2611
Eco147I	AGGCCT	1 cut(s)	439
Eco24I	GRGCYC	2 cut(s)	194, 2744
Eco31I	GGTCTC	2 cut(s)	1552, 2095
Eco32I	GATATC	2 cut(s)	118, 1419
Eco57I	CTGAAG	1 cut(s)	2430
Eco88I	CYCGRG	1 cut(s)	1569
EcoNI	CCTNNNNNAGG	1 cut(s)	1411
EcoO109I	RGGNCCY	1 cut(s)	2654
EcoRII	CCWGG	3 cut(s)	144, 2095, 2657
EcoRV	GATATC	2 cut(s)	118, 1419
EcoT14I	CCWWGG	3 cut(s)	1106, 2325, 2611
EcoT22I	ATGCAT	2 cut(s)	1192, 2516
EcoT38I	GRGCYC	2 cut(s)	194, 2744
ErhI	CCWWGG	3 cut(s)	1106, 2325, 2611
FalI	AAGNNNNNCTT	2 cut(s)	2622, 2654
FaqI	GGGAC	3 cut(s)	127, 806, 1420
FbaI	TGATCA	1 cut(s)	595
FblI	GTMKAC	2 cut(s)	1761, 2545
Fnu4HI	GCNGC	7 cut(s)	214, 583, 1844, 2174, 2502, 2535, 2681
FokI	GGATG	6 cut(s)	272, 460, 708, 795, 1271, 2220
FriOI	GRGCYC	2 cut(s)	194, 2744
Fsp4HI	GCNGC	7 cut(s)	214, 583, 1844, 2174, 2502, 2535, 2681
FspBI	CTAG	9 cut(s)	273, 311, 731, 1380, 1781, 1961, 2049, 2177, 2354
GlaI	GCGC	3 cut(s)	50, 302, 2606
GluI	GCNGC	7 cut(s)	214, 583, 1844, 2174, 2502, 2535, 2681
GsaI	CCCAGC	1 cut(s)	301
HaeII	RGCGCY	2 cut(s)	52, 2608
HaeIII	GGCC	6 cut(s)	439, 582, 1104, 1311, 2523, 2655
HapII	CCGG	2 cut(s)	515, 1697
HgaI	GACGC	2 cut(s)	205, 402
HhaI	GCGC	3 cut(s)	51, 303, 2607
Hin6I	GCGC	3 cut(s)	49, 301, 2605
HinP1I	GCGC	3 cut(s)	49, 301, 2605
HincII	GTYRAC	5 cut(s)	445, 466, 2244, 2467, 2546
HindII	GTYRAC	5 cut(s)	445, 466, 2244, 2467, 2546
HindIII	AAGCTT	2 cut(s)	19, 2636
HpaI	GTTAAC	1 cut(s)	2467
HpaII	CCGG	2 cut(s)	515, 1697
HphI	GGTGA	7 cut(s)	82, 568, 605, 998, 1487, 2372, 2639
Hpy166II	GTNNAC	7 cut(s)	445, 466, 1478, 1762, 2244, 2467, 2546
Hpy8I	GTNNAC	7 cut(s)	445, 466, 1478, 1762, 2244, 2467, 2546
Hpy99I	CGWCG	1 cut(s)	418
HpyAV	CCTTC	4 cut(s)	65, 143, 2021, 2195
HpyCH4III	ACNGT	5 cut(s)	369, 470, 1001, 1258, 1893
HpyCH4IV	ACGT	4 cut(s)	805, 982, 1270, 1306
HpyF10VI	GCNNNNNNNGC	7 cut(s)	210, 298, 1308, 2130, 2182, 2520, 2689
HpyF3I	CTNAG	9 cut(s)	224, 537, 735, 1176, 1263, 1313, 1452, 1564, 2490
HpySE526I	ACGT	4 cut(s)	805, 982, 1270, 1306
HspAI	GCGC	3 cut(s)	49, 301, 2605
Ksp22I	TGATCA	1 cut(s)	595
KspAI	GTTAAC	1 cut(s)	2467
LguI	GCTCTTC	1 cut(s)	160
LmnI	GCTCC	5 cut(s)	197, 1732, 1909, 2155, 2326
Lsp1109I	GCAGC	6 cut(s)	225, 1830, 2160, 2513, 2521, 2692
LweI	GCATC	8 cut(s)	400, 686, 773, 1199, 1293, 1343, 1810, 2523
MaeI	CTAG	9 cut(s)	273, 311, 731, 1380, 1781, 1961, 2049, 2177, 2354
MaeII	ACGT	4 cut(s)	805, 982, 1270, 1306
MaeIII	GTNAC	7 cut(s)	356, 526, 787, 839, 1956, 2436, 2506
MbiI	CCGCTC	1 cut(s)	2321
MfeI	CAATTG	2 cut(s)	1899, 2118
MflI	RGATCY	6 cut(s)	640, 658, 1147, 1324, 1403, 1483
MhlI	GDGCHC	6 cut(s)	194, 232, 1370, 1809, 1914, 2744
MlyI	GAGTC	8 cut(s)	129, 353, 406, 1442, 2016, 2069, 2384, 2661
MmeI	TCCRAC	1 cut(s)	1553
Mph1103I	ATGCAT	2 cut(s)	1192, 2516
MroXI	GAANNNNTTC	3 cut(s)	1000, 1853, 2415
MslI	CAYNNNNRTG	2 cut(s)	185, 258
MspA1I	CMGCKG	1 cut(s)	2504
MspCI	CTTAAG	1 cut(s)	1289
MspI	CCGG	2 cut(s)	515, 1697
MspR9I	CCNGG	3 cut(s)	146, 2097, 2659
MunI	CAATTG	2 cut(s)	1899, 2118
Mva1269I	GAATGC	1 cut(s)	2589
MvaI	CCWGG	3 cut(s)	146, 2097, 2659
MwoI	GCNNNNNNNGC	7 cut(s)	210, 298, 1308, 2130, 2182, 2520, 2689
NcoI	CCATGG	2 cut(s)	1106, 2611
NheI	GCTAGC	2 cut(s)	730, 2176
NlaIV	GGNNCC	8 cut(s)	193, 280, 513, 660, 1149, 1405, 1728, 2656
NmeAIII	GCCGAG	3 cut(s)	1469, 2221, 2749
NmuCI	GTSAC	3 cut(s)	356, 526, 839
NsiI	ATGCAT	2 cut(s)	1192, 2516
NspI	RCATGY	2 cut(s)	2457, 2514
OliI	CACNNNNGTG	1 cut(s)	185
PaeR7I	CTCGAG	1 cut(s)	1569
PagI	TCATGA	1 cut(s)	388
PasI	CCCWGGG	1 cut(s)	2658
PceI	AGGCCT	1 cut(s)	439
PciSI	GCTCTTC	1 cut(s)	160
PctI	GAATGC	1 cut(s)	2589
PdmI	GAANNNNTTC	3 cut(s)	1000, 1853, 2415
PfeI	GAWTC	7 cut(s)	109, 559, 689, 920, 1679, 1718, 2416
PkrI	GCNGC	7 cut(s)	215, 584, 1845, 2175, 2503, 2536, 2682
PleI	GAGTC	8 cut(s)	129, 353, 405, 1441, 2015, 2068, 2383, 2661
PpsI	GAGTC	8 cut(s)	129, 353, 405, 1441, 2015, 2068, 2383, 2661
Ppu21I	YACGTR	2 cut(s)	983, 1271
PshAI	GACNNNNGTC	2 cut(s)	139, 450
Psp1406I	AACGTT	1 cut(s)	805
Psp6I	CCWGG	3 cut(s)	144, 2095, 2657
PspFI	CCCAGC	1 cut(s)	297
PspGI	CCWGG	3 cut(s)	144, 2095, 2657
PspN4I	GGNNCC	8 cut(s)	193, 280, 513, 660, 1149, 1405, 1728, 2656
PspPI	GGNCC	3 cut(s)	1103, 2522, 2654
PstNI	CAGNNNCTG	1 cut(s)	2063
PsuI	RGATCY	6 cut(s)	640, 658, 1147, 1324, 1403, 1483
PvuII	CAGCTG	1 cut(s)	2504
RsaI	GTAC	4 cut(s)	405, 1143, 1814, 2289
RsaNI	GTAC	4 cut(s)	404, 1142, 1813, 2288
RseI	CAYNNNNRTG	2 cut(s)	185, 258
SalI	GTCGAC	1 cut(s)	2544
SapI	GCTCTTC	1 cut(s)	160
SatI	GCNGC	7 cut(s)	214, 583, 1844, 2174, 2502, 2535, 2681
Sau96I	GGNCC	3 cut(s)	1103, 2522, 2654
ScaI	AGTACT	1 cut(s)	1143
SchI	GAGTC	8 cut(s)	129, 353, 406, 1442, 2016, 2069, 2384, 2661
ScrFI	CCNGG	3 cut(s)	146, 2097, 2659
SduI	GDGCHC	6 cut(s)	194, 232, 1370, 1809, 1914, 2744
SfaNI	GCATC	8 cut(s)	400, 686, 773, 1199, 1293, 1343, 1810, 2523
SfcI	CTRYAG	1 cut(s)	2384
Sfr274I	CTCGAG	1 cut(s)	1569
SlaI	CTCGAG	1 cut(s)	1569
SmiMI	CAYNNNNRTG	2 cut(s)	185, 258
SmlI	CTYRAG	6 cut(s)	22, 433, 634, 1289, 1569, 1796
SmoI	CTYRAG	6 cut(s)	22, 433, 634, 1289, 1569, 1796
SseBI	AGGCCT	1 cut(s)	439
SsiI	CCGC	7 cut(s)	81, 583, 938, 1430, 2163, 2302, 2319
SspI	AATATT	1 cut(s)	2189
SspMI	CTAG	9 cut(s)	273, 311, 731, 1380, 1781, 1961, 2049, 2177, 2354
StuI	AGGCCT	1 cut(s)	439
StyD4I	CCNGG	3 cut(s)	144, 2095, 2657
StyI	CCWWGG	3 cut(s)	1106, 2325, 2611
TaaI	ACNGT	5 cut(s)	369, 470, 1001, 1258, 1893
TaiI	ACGT	4 cut(s)	808, 985, 1273, 1309
TaqI	TCGA	6 cut(s)	120, 335, 1570, 2373, 2458, 2545
TatI	WGTACW	2 cut(s)	403, 1141
TauI	GCSGC	1 cut(s)	585
TfiI	GAWTC	7 cut(s)	109, 559, 689, 920, 1679, 1718, 2416
TscAI	CASTG	9 cut(s)	189, 232, 336, 511, 856, 949, 1167, 1261, 1651
TseFI	GTSAC	3 cut(s)	356, 526, 839
TseI	GCWGC	6 cut(s)	213, 1843, 2173, 2501, 2534, 2680
Tsp45I	GTSAC	3 cut(s)	356, 526, 839
TspGWI	ACGGA	2 cut(s)	184, 1111
TspRI	CASTG	9 cut(s)	189, 232, 336, 511, 856, 949, 1167, 1261, 1651
Vha464I	CTTAAG	1 cut(s)	1289
XagI	CCTNNNNNAGG	1 cut(s)	1411
XapI	RAATTY	7 cut(s)	339, 346, 772, 1030, 1557, 1785, 2391
XbaI	TCTAGA	2 cut(s)	272, 310
XceI	RCATGY	2 cut(s)	2457, 2514
XcmI	CCANNNNNNNNNTGG	1 cut(s)	2034
XhoI	CTCGAG	1 cut(s)	1569
XmiI	GTMKAC	2 cut(s)	1761, 2545
XmnI	GAANNNNTTC	3 cut(s)	1000, 1853, 2415
XspI	CTAG	9 cut(s)	273, 311, 731, 1380, 1781, 1961, 2049, 2177, 2354
ZrmI	AGTACT	1 cut(s)	1143
Zsp2I	ATGCAT	2 cut(s)	1192, 2516

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.