Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr09

Orthogroup ID

OG0002964

Physical Location & Seq

Genomic Coordinates Forward (+)

32048045 .. 32051092

Gene Structure 3048 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD09G1250200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1386 bp

ATGTTGAGGGGAAGAGAAAGCTTGATACGATTGGTGGGCAAACGCCGGCGCTTCCTTCCCCACCGTCAATCACTCCTCTCCTCCCCTACCCAGAACTCTGTGAATCTGTGCACTGATGAAAATGGTAAAATCACTGGAAACATTGAGAGTGTTGTGTGTGGAGGGGTTGCAGATGATGAGAGAGTTACTTGCCCTGTTTGCGGCCAACAAGTCAGTGGCCAAAACAACATCATCAATTCTCATCTGGATGTGTGTCTATCAAGGGGAACCAAGCGGAAGCTGACCCAGCGCACACTTTTAGAGTTGAACTTTTGCCCAGATTCAAAAGTTCAAGCTCGTTCCCGTGACTTGGAAGGGTTAGGAAATGAGTTATTTCATACAGTCCATGACGACGGTAGTGTACAGAGTGTTCATGGTTTTTCTGATGACACCCTCTGTGGTTCATTATTGAATTCAATGTCTGATATGCAAAATCAGGTTAATAGTCCATCTAGAAAACCAATCAGTAAGGATAGGGTAAGTGCCGCTTTTGATGCTCACTCACTGGCCCCGAAGAATGAGGTGATGGATTGTGACATGACAATCACAGAGGATGACATATGTAGGGTCATTCTTGAGACTTTTATTGTTGGCCGTAGATTTAGTGATGAAAATGAATTATATCTTGGTGCAAGCATTTCTCTTTTAAGAGACCCTGACAATATTAAAGATCGCAATGCCATTAAGGTTATCTCTTCTGATTCAGGATGCCCTAAAGTGCTTGGTTTTCTCCCTCGCAAGCTGGCTCAGTATTTGTCTCCTCTGATGGAGAAGTACTGCCTACAGTTTGAGGGACGCGTGATCTCTGTTCCAAAGCACGCTATTGATGTTGTTCCTATAGAGATCATGTCCCAGAAGATTGAACCATGTAGTGCCAAGGAATATTATAATGATGAGGCTTTCGTATTTTTGTGGAAAAATGCCCAGCAAGTAATTGAATCTACAAAGTCCTGTCCACCTAGTGCCATAAAGTATCAGGAAAACTTTTGTGTTTTCATACATGAGGTTTTGAGAAACAATTCTCACCTCTTGATAGATGATGAAAAGAATTTCATGGAGTTGTTTACTTCATTGGCGGATGATAGTCAGAGGCTATTTCTTTGCTGCTACTGTTGTATATTTGTGTCTTTTCATCTATTTGCCGTAAGAGATCTTGTGATTGTGGTTGAACATAAGCTAGCCTCGTTATCCACAATTTGGTTTTGGGTGATATCTCTTTGTTTTGCTGGTCATAAACACGAAATGTGCATCAATATGCTACACAACGTAGCAAATGCTGCTCAAACTTCTCTCATGGGAATAAACTATGATTCTAAAAATCGTGCCACCAGACTAAGGCTCCTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000280 GO:0003674 GO:0003676 GO:0003677 GO:0003824 GO:0004518 GO:0004519 GO:0004520 GO:0004527 GO:0004536 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006281 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007049 GO:0007059 GO:0007127 GO:0007129 GO:0008150 GO:0008152 GO:0008409 GO:0009987 GO:0016043 GO:0016787 GO:0016788 GO:0016888 GO:0016893 GO:0017108 GO:0022402 GO:0022414 GO:0033554 GO:0034641 GO:0036297 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0045132 GO:0045143 GO:0046483 GO:0048256 GO:0048285 GO:0050896 GO:0051276 GO:0051321 GO:0051716 GO:0061982 GO:0070192 GO:0070336 GO:0071704 GO:0071840 GO:0090304 GO:0090305 GO:0097159 GO:0098813 GO:0140013 GO:0140097 GO:1901360 GO:1901363 GO:1903046

KEGG Pathways

Metabolic & Signaling

ko03460 map03460

Pfam Domains

Protein Families

HIRAN VRR_NUC

Protein Analysis

462

Amino Acids

51.95

Weight (kDa)

6.4

Isoelectric Point (pI)

43.4

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HIRAN	PF08797	205 - 286	7.3e-13	HIRAN domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002964)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G48360 AT1G48360 AT1G48360 AT1G48360 AT1G48360 AT1G48360
fragaria_vesca	FvH4_4g12370 FvH4_4g12370 FvH4_4g12370 FvH4_4g12370 FvH4_4g12370 FvH4_4g12370 FvH4_4g12370 FvH4_4g12370
malus_domestica	MD00G1163900.v1.1 MD09G1250200.v1.1 MD09G1250400.v1.1
prunus_persica	Prupe.1G176700_v2.0.a1 Prupe.1G176700_v2.0.a1 Prupe.1G176700_v2.0.a1 Prupe.1G176700_v2.0.a1 Prupe.1G176700_v2.0.a1
pyrus_communis	pycom04g02280 pycom13g29380
rosa_chinensis	RchiOBHm_Chr4g0410481
rosa_laevigata	RLG00000008424
rosa_multiflora	Rmu_sc0001969.1_g000008 Rmu_sc0016181.1_g000004
rosa_roxburghii	Rroxscaffold_5G00355290
rosa_rugosa	Rorug04G0114400
rosa_samantha	Rh4AG160900 Rh4BG160300 Rh4CG173100 Rh4DG156400
rosa_wichuraiana	Rw0G014390 Rw0G014400 Rw4G013420 Rw4G037760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	927
AccB7I	CCANNNNNTGG	1 cut(s)	1236
AccII	CGCG	1 cut(s)	837
AciI	CCGC	4 cut(s)	201, 274, 525, 1115
AcoI	YGGCCR	3 cut(s)	202, 217, 631
AcsI	RAATTY	2 cut(s)	451, 1087
AdeI	CACNNNGTG	1 cut(s)	1001
AfaI	GTAC	2 cut(s)	402, 815
AfiI	CCNNNNNNNGG	4 cut(s)	200, 349, 1236, 1374
AflIII	ACRYGT	1 cut(s)	835
AgsI	TTSAA	8 cut(s)	307, 324, 332, 451, 456, 902, 977, 1208
AjuI	GAANNNNNNNTTGG	2 cut(s)	648, 680
AluBI	AGCT	5 cut(s)	21, 280, 335, 781, 1216
AluI	AGCT	5 cut(s)	21, 280, 335, 781, 1216
Alw21I	GWGCWC	1 cut(s)	113
Alw26I	GTCTC	3 cut(s)	611, 684, 801
Alw44I	GTGCAC	1 cut(s)	109
AoxI	GGCC	4 cut(s)	202, 217, 546, 631
ApaLI	GTGCAC	1 cut(s)	109
ApeKI	GCWGC	2 cut(s)	1143, 1316
ApoI	RAATTY	2 cut(s)	451, 1087
Asp700I	GAANNNNTTC	1 cut(s)	1057
AspLEI	GCGC	2 cut(s)	51, 291
AspS9I	GGNCC	1 cut(s)	547
AsuHPI	GGTGA	3 cut(s)	574, 1055, 1258
AsuNHI	GCTAGC	1 cut(s)	1216
BaeGI	GKGCMC	1 cut(s)	113
BalI	TGGCCA	1 cut(s)	219
Bbv12I	GWGCWC	1 cut(s)	113
BbvI	GCAGC	2 cut(s)	1130, 1303
BccI	CCATC	3 cut(s)	496, 559, 799
BceAI	ACGGC	2 cut(s)	618, 1166
BcoDI	GTCTC	3 cut(s)	611, 684, 801
BfaI	CTAG	3 cut(s)	492, 999, 1217
BfmI	CTRYAG	2 cut(s)	821, 876
BfoI	RGCGCY	1 cut(s)	52
BglII	AGATCT	1 cut(s)	1189
BisI	GCNGC	4 cut(s)	202, 525, 1144, 1317
BlsI	GCNGC	4 cut(s)	203, 526, 1145, 1318
BmcAI	AGTACT	1 cut(s)	815
BmgT120I	GGNCC	1 cut(s)	547
BmiI	GGNNCC	3 cut(s)	268, 549, 1379
BmsI	GCATC	3 cut(s)	523, 737, 1296
BmtI	GCTAGC	1 cut(s)	1220
BpuEI	CTTGAG	1 cut(s)	635
BsaI	GGTCTC	1 cut(s)	684
BsaJI	CCNNGG	1 cut(s)	915
BsaXI	ACNNNNNCTCC	1 cut(s)	1362
Bsc4I	CCNNNNNNNGG	4 cut(s)	200, 349, 1236, 1374
Bse118I	RCCGGY	1 cut(s)	45
Bse1I	ACTGG	2 cut(s)	139, 549
Bse3DI	GCAATG	1 cut(s)	721
BseDI	CCNNGG	1 cut(s)	915
BseGI	GGATG	4 cut(s)	253, 598, 752, 1123
BseLI	CCNNNNNNNGG	4 cut(s)	200, 349, 1236, 1374
BseMI	GCAATG	1 cut(s)	721
BseMII	CTCAG	1 cut(s)	800
BseNI	ACTGG	2 cut(s)	139, 549
BseRI	GAGGAG	4 cut(s)	65, 70, 789, 1370
BseSI	GKGCMC	1 cut(s)	113
BseXI	GCAGC	2 cut(s)	1130, 1303
BseYI	CCCAGC	2 cut(s)	285, 963
Bsh1236I	CGCG	1 cut(s)	837
BshFI	GGCC	4 cut(s)	204, 219, 548, 633
BsiHKAI	GWGCWC	1 cut(s)	113
BsiSI	CCGG	1 cut(s)	46
BslFI	GGGAC	2 cut(s)	846, 874
BslI	CCNNNNNNNGG	4 cut(s)	200, 349, 1236, 1374
BsmAI	GTCTC	3 cut(s)	611, 684, 801
BsmFI	GGGAC	2 cut(s)	846, 874
BsnI	GGCC	4 cut(s)	204, 219, 548, 633
Bso31I	GGTCTC	1 cut(s)	684
Bsp1286I	GDGCHC	1 cut(s)	113
Bsp1407I	TGTACA	1 cut(s)	400
Bsp143I	GATC	4 cut(s)	709, 840, 882, 1189
BspACI	CCGC	4 cut(s)	201, 274, 525, 1115
BspANI	GGCC	4 cut(s)	204, 219, 548, 633
BspCNI	CTCAG	1 cut(s)	799
BspFNI	CGCG	1 cut(s)	837
BspLI	GGNNCC	3 cut(s)	268, 549, 1379
BspOI	GCTAGC	1 cut(s)	1220
BspTNI	GGTCTC	1 cut(s)	684
BsrDI	GCAATG	1 cut(s)	721
BsrFI	RCCGGY	1 cut(s)	45
BsrGI	TGTACA	1 cut(s)	400
BsrI	ACTGG	2 cut(s)	139, 549
BssAI	RCCGGY	1 cut(s)	45
BssECI	CCNNGG	1 cut(s)	915
BssMI	GATC	4 cut(s)	709, 840, 882, 1189
BssT1I	CCWWGG	1 cut(s)	915
Bst4CI	ACNGT	5 cut(s)	65, 382, 395, 825, 1151
Bst6I	CTCTTC	2 cut(s)	7, 739
BstAPI	GCANNNNNTGC	1 cut(s)	1316
BstAUI	TGTACA	1 cut(s)	400
BstC8I	GCNNGC	6 cut(s)	47, 673, 779, 783, 858, 1218
BstDEI	CTNAG	2 cut(s)	786, 1373
BstF5I	GGATG	4 cut(s)	253, 598, 752, 1123
BstFNI	CGCG	1 cut(s)	837
BstH2I	RGCGCY	1 cut(s)	52
BstHHI	GCGC	2 cut(s)	51, 291
BstKTI	GATC	4 cut(s)	712, 843, 885, 1192
BstMAI	GTCTC	3 cut(s)	611, 684, 801
BstMBI	GATC	4 cut(s)	709, 840, 882, 1189
BstMWI	GCNNNNNNNGC	4 cut(s)	198, 286, 533, 1316
BstSFI	CTRYAG	2 cut(s)	821, 876
BstSLI	GKGCMC	1 cut(s)	113
BstUI	CGCG	1 cut(s)	837
BstV1I	GCAGC	2 cut(s)	1130, 1303
BstX2I	RGATCY	1 cut(s)	1189
BstYI	RGATCY	1 cut(s)	1189
BsuRI	GGCC	4 cut(s)	204, 219, 548, 633
BtsCI	GGATG	4 cut(s)	253, 598, 752, 1123
BtsIMutI	CAGTG	4 cut(s)	111, 132, 220, 542
Cac8I	GCNNGC	6 cut(s)	47, 673, 779, 783, 858, 1218
CfoI	GCGC	2 cut(s)	51, 291
Cfr10I	RCCGGY	1 cut(s)	45
Cfr13I	GGNCC	1 cut(s)	547
CseI	GACGC	1 cut(s)	843
Csp6I	GTAC	2 cut(s)	401, 814
CviAII	CATG	8 cut(s)	386, 413, 577, 886, 906, 1040, 1093, 1333
CviQI	GTAC	2 cut(s)	401, 814
DdeI	CTNAG	2 cut(s)	786, 1373
DpnI	GATC	4 cut(s)	711, 842, 884, 1191
DpnII	GATC	4 cut(s)	709, 840, 882, 1189
DraIII	CACNNNGTG	1 cut(s)	1001
EaeI	YGGCCR	3 cut(s)	202, 217, 631
Eam1104I	CTCTTC	2 cut(s)	7, 739
EarI	CTCTTC	2 cut(s)	7, 739
EciI	GGCGGA	1 cut(s)	1130
Eco130I	CCWWGG	1 cut(s)	915
Eco31I	GGTCTC	1 cut(s)	684
Eco32I	GATATC	1 cut(s)	1251
EcoRI	GAATTC	1 cut(s)	451
EcoRV	GATATC	1 cut(s)	1251
EcoT14I	CCWWGG	1 cut(s)	915
ErhI	CCWWGG	1 cut(s)	915
FaeI	CATG	8 cut(s)	389, 416, 580, 889, 909, 1043, 1096, 1336
FalI	AAGNNNNNCTT	2 cut(s)	511, 543
FaqI	GGGAC	2 cut(s)	846, 874
FatI	CATG	8 cut(s)	385, 412, 576, 885, 905, 1039, 1092, 1332
FauNDI	CATATG	1 cut(s)	599
Fnu4HI	GCNGC	4 cut(s)	202, 525, 1144, 1317
FokI	GGATG	4 cut(s)	260, 605, 759, 1130
Fsp4HI	GCNGC	4 cut(s)	202, 525, 1144, 1317
FspBI	CTAG	3 cut(s)	492, 999, 1217
GlaI	GCGC	2 cut(s)	50, 290
GluI	GCNGC	4 cut(s)	202, 525, 1144, 1317
GsaI	CCCAGC	2 cut(s)	289, 967
HaeII	RGCGCY	1 cut(s)	52
HaeIII	GGCC	4 cut(s)	204, 219, 548, 633
HapII	CCGG	1 cut(s)	46
HgaI	GACGC	1 cut(s)	843
HhaI	GCGC	2 cut(s)	51, 291
Hin1II	CATG	8 cut(s)	389, 416, 580, 889, 909, 1043, 1096, 1336
Hin6I	GCGC	2 cut(s)	49, 289
HinP1I	GCGC	2 cut(s)	49, 289
HindIII	AAGCTT	1 cut(s)	19
HinfI	GANTC	5 cut(s)	103, 320, 740, 977, 1349
HpaII	CCGG	1 cut(s)	46
HphI	GGTGA	3 cut(s)	574, 1055, 1258
Hpy166II	GTNNAC	4 cut(s)	111, 401, 995, 1104
Hpy188I	TCNGA	5 cut(s)	424, 463, 739, 804, 1128
Hpy188III	TCNNGA	6 cut(s)	245, 492, 614, 744, 1016, 1069
Hpy8I	GTNNAC	4 cut(s)	111, 401, 995, 1104
Hpy99I	CGWCG	1 cut(s)	395
HpyAV	CCTTC	2 cut(s)	65, 347
HpyCH4III	ACNGT	5 cut(s)	65, 382, 395, 825, 1151
HpyCH4IV	ACGT	1 cut(s)	1305
HpyCH4V	TGCA	5 cut(s)	111, 170, 469, 671, 1287
HpyF10VI	GCNNNNNNNGC	4 cut(s)	198, 286, 533, 1316
HpyF3I	CTNAG	2 cut(s)	786, 1373
HpySE526I	ACGT	1 cut(s)	1305
Hsp92II	CATG	8 cut(s)	389, 416, 580, 889, 909, 1043, 1096, 1336
HspAI	GCGC	2 cut(s)	49, 289
KroI	GCCGGC	1 cut(s)	45
KroNI	GCCGGC	1 cut(s)	47
Kzo9I	GATC	4 cut(s)	709, 840, 882, 1189
LmnI	GCTCC	1 cut(s)	1383
Lsp1109I	GCAGC	2 cut(s)	1130, 1303
LweI	GCATC	3 cut(s)	523, 737, 1296
MaeI	CTAG	3 cut(s)	492, 999, 1217
MaeII	ACGT	1 cut(s)	1305
MaeIII	GTNAC	3 cut(s)	184, 344, 572
MalI	GATC	4 cut(s)	711, 842, 884, 1191
MboI	GATC	4 cut(s)	709, 840, 882, 1189
MboII	GAAGA	4 cut(s)	24, 565, 726, 907
MflI	RGATCY	1 cut(s)	1189
MhlI	GDGCHC	1 cut(s)	113
MlsI	TGGCCA	1 cut(s)	219
MluCI	AATT	7 cut(s)	235, 451, 656, 972, 1057, 1087, 1233
MluI	ACGCGT	1 cut(s)	835
MluNI	TGGCCA	1 cut(s)	219
Mox20I	TGGCCA	1 cut(s)	219
MreI	CGCCGGCG	1 cut(s)	45
MroNI	GCCGGC	1 cut(s)	45
MroXI	GAANNNNTTC	1 cut(s)	1057
MscI	TGGCCA	1 cut(s)	219
MseI	TTAA	4 cut(s)	480, 686, 705, 723
MslI	CAYNNNNRTG	2 cut(s)	246, 1292
Msp20I	TGGCCA	1 cut(s)	219
MspI	CCGG	1 cut(s)	46
MvnI	CGCG	1 cut(s)	837
MwoI	GCNNNNNNNGC	4 cut(s)	198, 286, 533, 1316
NaeI	GCCGGC	1 cut(s)	47
NdeI	CATATG	1 cut(s)	599
NdeII	GATC	4 cut(s)	709, 840, 882, 1189
NgoMIV	GCCGGC	1 cut(s)	45
NheI	GCTAGC	1 cut(s)	1216
NlaIII	CATG	8 cut(s)	389, 416, 580, 889, 909, 1043, 1096, 1336
NlaIV	GGNNCC	3 cut(s)	268, 549, 1379
NmuCI	GTSAC	2 cut(s)	344, 572
PdiI	GCCGGC	1 cut(s)	47
PdmI	GAANNNNTTC	1 cut(s)	1057
PfeI	GAWTC	5 cut(s)	103, 320, 740, 977, 1349
PflMI	CCANNNNNTGG	1 cut(s)	1236
PkrI	GCNGC	4 cut(s)	203, 526, 1145, 1318
PsiI	TTATAA	1 cut(s)	927
PspFI	CCCAGC	2 cut(s)	285, 963
PspN4I	GGNNCC	3 cut(s)	268, 549, 1379
PspPI	GGNCC	1 cut(s)	547
PsrI	GAACNNNNNNTAC	2 cut(s)	393, 425
PsuI	RGATCY	1 cut(s)	1189
RsaI	GTAC	2 cut(s)	402, 815
RsaNI	GTAC	2 cut(s)	401, 814
RseI	CAYNNNNRTG	2 cut(s)	246, 1292
SaqAI	TTAA	4 cut(s)	480, 686, 705, 723
SatI	GCNGC	4 cut(s)	202, 525, 1144, 1317
Sau3AI	GATC	4 cut(s)	709, 840, 882, 1189
Sau96I	GGNCC	1 cut(s)	547
ScaI	AGTACT	1 cut(s)	815
SduI	GDGCHC	1 cut(s)	113
SfaNI	GCATC	3 cut(s)	523, 737, 1296
SfcI	CTRYAG	2 cut(s)	821, 876
SgrAI	CRCCGGYG	1 cut(s)	45
SmiMI	CAYNNNNRTG	2 cut(s)	246, 1292
SmlI	CTYRAG	1 cut(s)	614
SmoI	CTYRAG	1 cut(s)	614
Sse9I	AATT	7 cut(s)	235, 451, 656, 972, 1057, 1087, 1233
SsiI	CCGC	4 cut(s)	201, 274, 525, 1115
SspI	AATATT	2 cut(s)	703, 923
SspMI	CTAG	3 cut(s)	492, 999, 1217
StyI	CCWWGG	1 cut(s)	915
TaaI	ACNGT	5 cut(s)	65, 382, 395, 825, 1151
TaiI	ACGT	1 cut(s)	1308
TasI	AATT	7 cut(s)	235, 451, 656, 972, 1057, 1087, 1233
TatI	WGTACW	2 cut(s)	400, 813
TauI	GCSGC	2 cut(s)	204, 527
TfiI	GAWTC	5 cut(s)	103, 320, 740, 977, 1349
Tru1I	TTAA	4 cut(s)	480, 686, 705, 723
Tru9I	TTAA	4 cut(s)	480, 686, 705, 723
TscAI	CASTG	4 cut(s)	118, 139, 220, 549
TseFI	GTSAC	2 cut(s)	344, 572
TseI	GCWGC	2 cut(s)	1143, 1316
Tsp45I	GTSAC	2 cut(s)	344, 572
TspRI	CASTG	4 cut(s)	118, 139, 220, 549
Van91I	CCANNNNNTGG	1 cut(s)	1236
VneI	GTGCAC	1 cut(s)	109
XapI	RAATTY	2 cut(s)	451, 1087
XbaI	TCTAGA	1 cut(s)	491
XcmI	CCANNNNNNNNNTGG	1 cut(s)	212
XmnI	GAANNNNTTC	1 cut(s)	1057
XspI	CTAG	3 cut(s)	492, 999, 1217
ZrmI	AGTACT	1 cut(s)	815

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.