Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Contig00646

Orthogroup ID

OG0002964

Physical Location & Seq

Genomic Coordinates Reverse (-)

32230 .. 33772

Gene Structure 1543 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw0G014390.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 675 bp

ATGGAGGTAAATGTTCCAGGGAGACCTTTAAATTGTGCAATTGGCACAAAGAGCAGGTTTTATGGAGAAGATGGGGAGCAATGCGGTGTAGAGCAGCTAGCTCTGCAATATTATGCCGAGGAAGGTGGATGGCAGGGTGTTCATACAGAGAGTGGCATTTGGTTGACTATTTTTGGACTTCTTATGTGGGATATTATATTTTCCAATGTACCAAATGTCTTCCGCACCAGATTTCAGACCGCTCCCTTGGATTTAGAGACTGATAGCTTTTATCTAGTGAGAAAGAACCATATCGAGTCTCACCTACAGAAAATTCTTGATGGCATGGCTGAAGAGATTCTCATCACTTCATGGGAGTTACATGAGGGAACAGCATGTCGAGGAGTTAACTGGGGGCGACATTCCCTCTCTGAGCTTCGGGCAGCTGTTACATGCATCGGTGGCCCATGTGTGGCTGCATTTTGTCGACATCTTGCACAAGATTATCGTAGTTGGTCAAGTGGAATGCCAGATTTACTTCTGTGGCGCTTCCATGGGAAATACAGAGGTGAAGCGAAGCTTGTTGAAGTTAAAGGCCCCAGGGATAGACTCTCTGAACAGCAGCGAGCATGGCTATTGCTTTTAATGGATTGTGGGTTCAATGCCGAGGTCTGTAAAGTGAGCCCTATTGTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000280 GO:0003674 GO:0003676 GO:0003677 GO:0003824 GO:0004518 GO:0004519 GO:0004520 GO:0004527 GO:0004536 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006281 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007049 GO:0007059 GO:0007127 GO:0007129 GO:0008150 GO:0008152 GO:0008409 GO:0009987 GO:0016043 GO:0016787 GO:0016788 GO:0016888 GO:0016893 GO:0017108 GO:0022402 GO:0022414 GO:0033554 GO:0034641 GO:0036297 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0045132 GO:0045143 GO:0046483 GO:0048256 GO:0048285 GO:0050896 GO:0051276 GO:0051321 GO:0051716 GO:0061982 GO:0070192 GO:0070336 GO:0071704 GO:0071840 GO:0090304 GO:0090305 GO:0097159 GO:0098813 GO:0140013 GO:0140097 GO:1901360 GO:1901363 GO:1903046

KEGG Pathways

Metabolic & Signaling

ko03460 map03460

Pfam Domains

Protein Families

HIRAN VRR_NUC

Protein Analysis

224

Amino Acids

25.38

Weight (kDa)

5.81

Isoelectric Point (pI)

45.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
VRR_NUC	PF08774	108 - 221	2.3e-37	VRR-NUC domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0002964)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G48360 AT1G48360 AT1G48360 AT1G48360 AT1G48360 AT1G48360
fragaria_vesca	FvH4_4g12370 FvH4_4g12370 FvH4_4g12370 FvH4_4g12370 FvH4_4g12370 FvH4_4g12370 FvH4_4g12370 FvH4_4g12370
malus_domestica	MD00G1163900.v1.1 MD09G1250200.v1.1 MD09G1250400.v1.1
prunus_persica	Prupe.1G176700_v2.0.a1 Prupe.1G176700_v2.0.a1 Prupe.1G176700_v2.0.a1 Prupe.1G176700_v2.0.a1 Prupe.1G176700_v2.0.a1
pyrus_communis	pycom04g02280 pycom13g29380
rosa_chinensis	RchiOBHm_Chr4g0410481
rosa_laevigata	RLG00000008424
rosa_multiflora	Rmu_sc0001969.1_g000008 Rmu_sc0016181.1_g000004
rosa_roxburghii	Rroxscaffold_5G00355290
rosa_rugosa	Rorug04G0114400
rosa_samantha	Rh4AG160900 Rh4BG160300 Rh4CG173100 Rh4DG156400
rosa_wichuraiana	Rw0G014390 Rw0G014400 Rw4G013420 Rw4G037760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	45
AccBSI	CCGCTC	1 cut(s)	242
AccI	GTMKAC	1 cut(s)	466
AciI	CCGC	3 cut(s)	84, 223, 240
AcsI	RAATTY	1 cut(s)	312
AcuI	CTGAAG	1 cut(s)	351
AfaI	GTAC	1 cut(s)	210
AfiI	CCNNNNNNNGG	1 cut(s)	451
AgsI	TTSAA	2 cut(s)	566, 640
AjnI	CCWGG	2 cut(s)	16, 578
AloI	GAACNNNNNNTCC	2 cut(s)	620, 652
AluBI	AGCT	6 cut(s)	97, 101, 267, 415, 425, 559
AluI	AGCT	6 cut(s)	97, 101, 267, 415, 425, 559
Alw26I	GTCTC	3 cut(s)	16, 251, 303
AoxI	GGCC	2 cut(s)	442, 574
ApeKI	GCWGC	4 cut(s)	94, 422, 455, 601
ApoI	RAATTY	1 cut(s)	312
Asp700I	GAANNNNTTC	1 cut(s)	336
AspLEI	GCGC	1 cut(s)	528
AspS9I	GGNCC	2 cut(s)	443, 575
AsuHPI	GGTGA	2 cut(s)	293, 560
AsuNHI	GCTAGC	1 cut(s)	97
BanII	GRGCYC	1 cut(s)	665
BbsI	GAAGAC	1 cut(s)	211
BbvI	GCAGC	4 cut(s)	106, 434, 442, 613
BccI	CCATC	3 cut(s)	65, 123, 314
BciT130I	CCWGG	2 cut(s)	18, 580
BcoDI	GTCTC	3 cut(s)	16, 251, 303
BfaI	CTAG	2 cut(s)	98, 275
BfmI	CTRYAG	1 cut(s)	305
BfoI	RGCGCY	1 cut(s)	529
BfuAI	ACCTGC	1 cut(s)	45
BisI	GCNGC	4 cut(s)	95, 423, 456, 602
BlsI	GCNGC	4 cut(s)	96, 424, 457, 603
Bme1390I	CCNGG	2 cut(s)	18, 580
BmgT120I	GGNCC	2 cut(s)	443, 575
BmiI	GGNNCC	1 cut(s)	577
BmrFI	CCNGG	2 cut(s)	18, 580
BmrI	ACTGGG	1 cut(s)	400
BmsI	GCATC	1 cut(s)	444
BmtI	GCTAGC	1 cut(s)	101
BmuI	ACTGGG	1 cut(s)	400
BpiI	GAAGAC	1 cut(s)	211
BsaBI	GATNNNNATC	1 cut(s)	341
BsaI	GGTCTC	1 cut(s)	16
BsaJI	CCNNGG	7 cut(s)	17, 117, 246, 532, 578, 579, 645
Bsc4I	CCNNNNNNNGG	1 cut(s)	451
Bse1I	ACTGG	1 cut(s)	395
Bse3DI	GCAATG	1 cut(s)	86
Bse8I	GATNNNNATC	1 cut(s)	341
BseBI	CCWGG	2 cut(s)	18, 580
BseDI	CCNNGG	7 cut(s)	17, 117, 246, 532, 578, 579, 645
BseGI	GGATG	1 cut(s)	134
BseJI	GATNNNNATC	1 cut(s)	341
BseLI	CCNNNNNNNGG	1 cut(s)	451
BseMI	GCAATG	1 cut(s)	86
BseMII	CTCAG	1 cut(s)	402
BseNI	ACTGG	1 cut(s)	395
BseRI	GAGGAG	1 cut(s)	396
BseXI	GCAGC	4 cut(s)	106, 434, 442, 613
BshFI	GGCC	2 cut(s)	444, 576
BslI	CCNNNNNNNGG	1 cut(s)	451
BsmAI	GTCTC	3 cut(s)	16, 251, 303
BsmI	GAATGC	1 cut(s)	510
BsnI	GGCC	2 cut(s)	444, 576
Bso31I	GGTCTC	1 cut(s)	16
Bsp1286I	GDGCHC	1 cut(s)	665
Bsp19I	CCATGG	1 cut(s)	532
BspACI	CCGC	3 cut(s)	84, 223, 240
BspANI	GGCC	2 cut(s)	444, 576
BspCNI	CTCAG	1 cut(s)	403
BspLI	GGNNCC	1 cut(s)	577
BspMI	ACCTGC	1 cut(s)	45
BspOI	GCTAGC	1 cut(s)	101
BspTNI	GGTCTC	1 cut(s)	16
BsrBI	CCGCTC	1 cut(s)	242
BsrDI	GCAATG	1 cut(s)	86
BsrI	ACTGG	1 cut(s)	395
BssECI	CCNNGG	7 cut(s)	17, 117, 246, 532, 578, 579, 645
BssT1I	CCWWGG	2 cut(s)	246, 532
Bst2UI	CCWGG	2 cut(s)	18, 580
Bst6I	CTCTTC	1 cut(s)	327
BstC8I	GCNNGC	2 cut(s)	99, 606
BstDEI	CTNAG	1 cut(s)	411
BstDSI	CCRYGG	1 cut(s)	532
BstF5I	GGATG	1 cut(s)	134
BstH2I	RGCGCY	1 cut(s)	529
BstHHI	GCGC	1 cut(s)	528
BstMAI	GTCTC	3 cut(s)	16, 251, 303
BstMWI	GCNNNNNNNGC	4 cut(s)	51, 103, 441, 610
BstNI	CCWGG	2 cut(s)	18, 580
BstNSI	RCATGY	2 cut(s)	378, 435
BstSCI	CCNGG	2 cut(s)	16, 578
BstSFI	CTRYAG	1 cut(s)	305
BstV1I	GCAGC	4 cut(s)	106, 434, 442, 613
BstV2I	GAAGAC	1 cut(s)	211
BsuRI	GGCC	2 cut(s)	444, 576
BtgI	CCRYGG	1 cut(s)	532
BtsCI	GGATG	1 cut(s)	134
BveI	ACCTGC	1 cut(s)	45
Cac8I	GCNNGC	2 cut(s)	99, 606
CfoI	GCGC	1 cut(s)	528
Cfr13I	GGNCC	2 cut(s)	443, 575
Csp6I	GTAC	1 cut(s)	209
CviAII	CATG	8 cut(s)	325, 351, 362, 375, 432, 447, 533, 609
CviQI	GTAC	1 cut(s)	209
DdeI	CTNAG	1 cut(s)	411
DraI	TTTAAA	1 cut(s)	30
Eam1104I	CTCTTC	1 cut(s)	327
EarI	CTCTTC	1 cut(s)	327
Eco130I	CCWWGG	2 cut(s)	246, 532
Eco24I	GRGCYC	1 cut(s)	665
Eco31I	GGTCTC	1 cut(s)	16
Eco57I	CTGAAG	1 cut(s)	351
EcoO109I	RGGNCCY	1 cut(s)	575
EcoRII	CCWGG	2 cut(s)	16, 578
EcoT14I	CCWWGG	2 cut(s)	246, 532
EcoT22I	ATGCAT	1 cut(s)	437
EcoT38I	GRGCYC	1 cut(s)	665
ErhI	CCWWGG	2 cut(s)	246, 532
FaeI	CATG	8 cut(s)	328, 354, 365, 378, 435, 450, 536, 612
FalI	AAGNNNNNCTT	2 cut(s)	543, 575
FatI	CATG	8 cut(s)	324, 350, 361, 374, 431, 446, 532, 608
FblI	GTMKAC	1 cut(s)	466
Fnu4HI	GCNGC	4 cut(s)	95, 423, 456, 602
FokI	GGATG	1 cut(s)	141
FriOI	GRGCYC	1 cut(s)	665
Fsp4HI	GCNGC	4 cut(s)	95, 423, 456, 602
FspBI	CTAG	2 cut(s)	98, 275
GlaI	GCGC	1 cut(s)	527
GluI	GCNGC	4 cut(s)	95, 423, 456, 602
HaeII	RGCGCY	1 cut(s)	529
HaeIII	GGCC	2 cut(s)	444, 576
HhaI	GCGC	1 cut(s)	528
Hin1II	CATG	8 cut(s)	328, 354, 365, 378, 435, 450, 536, 612
Hin6I	GCGC	1 cut(s)	526
HinP1I	GCGC	1 cut(s)	526
HincII	GTYRAC	3 cut(s)	165, 388, 467
HindII	GTYRAC	3 cut(s)	165, 388, 467
HindIII	AAGCTT	1 cut(s)	557
HinfI	GANTC	3 cut(s)	296, 337, 588
HpaI	GTTAAC	1 cut(s)	388
HphI	GGTGA	2 cut(s)	293, 560
Hpy166II	GTNNAC	3 cut(s)	165, 388, 467
Hpy188I	TCNGA	4 cut(s)	237, 412, 595, 674
Hpy188III	TCNNGA	1 cut(s)	317
Hpy8I	GTNNAC	3 cut(s)	165, 388, 467
HpyAV	CCTTC	1 cut(s)	116
HpyCH4V	TGCA	5 cut(s)	38, 106, 435, 458, 476
HpyF10VI	GCNNNNNNNGC	4 cut(s)	51, 103, 441, 610
HpyF3I	CTNAG	1 cut(s)	411
Hsp92II	CATG	8 cut(s)	328, 354, 365, 378, 435, 450, 536, 612
HspAI	GCGC	1 cut(s)	526
KspAI	GTTAAC	1 cut(s)	388
LmnI	GCTCC	2 cut(s)	76, 247
LpnPI	CCDG	9 cut(s)	3, 30, 40, 119, 241, 376, 522, 565, 592
Lsp1109I	GCAGC	4 cut(s)	106, 434, 442, 613
LweI	GCATC	1 cut(s)	444
MaeI	CTAG	2 cut(s)	98, 275
MaeIII	GTNAC	2 cut(s)	357, 427
MbiI	CCGCTC	1 cut(s)	242
MboII	GAAGA	3 cut(s)	80, 211, 344
MfeI	CAATTG	1 cut(s)	39
MhlI	GDGCHC	1 cut(s)	665
MluCI	AATT	3 cut(s)	31, 39, 312
MlyI	GAGTC	2 cut(s)	305, 582
MnlI	CCTC	6 cut(s)	112, 358, 374, 416, 539, 640
Mph1103I	ATGCAT	1 cut(s)	437
MroXI	GAANNNNTTC	1 cut(s)	336
MseI	TTAA	4 cut(s)	29, 387, 570, 623
MspA1I	CMGCKG	1 cut(s)	425
MspR9I	CCNGG	2 cut(s)	18, 580
MunI	CAATTG	1 cut(s)	39
Mva1269I	GAATGC	1 cut(s)	510
MvaI	CCWGG	2 cut(s)	18, 580
MwoI	GCNNNNNNNGC	4 cut(s)	51, 103, 441, 610
NcoI	CCATGG	1 cut(s)	532
NheI	GCTAGC	1 cut(s)	97
NlaIII	CATG	8 cut(s)	328, 354, 365, 378, 435, 450, 536, 612
NlaIV	GGNNCC	1 cut(s)	577
NmeAIII	GCCGAG	2 cut(s)	142, 670
NsiI	ATGCAT	1 cut(s)	437
NspI	RCATGY	2 cut(s)	378, 435
PasI	CCCWGGG	1 cut(s)	579
PctI	GAATGC	1 cut(s)	510
PdmI	GAANNNNTTC	1 cut(s)	336
PfeI	GAWTC	1 cut(s)	337
PkrI	GCNGC	4 cut(s)	96, 424, 457, 603
PleI	GAGTC	2 cut(s)	304, 582
PpsI	GAGTC	2 cut(s)	304, 582
Psp6I	CCWGG	2 cut(s)	16, 578
PspGI	CCWGG	2 cut(s)	16, 578
PspN4I	GGNNCC	1 cut(s)	577
PspPI	GGNCC	2 cut(s)	443, 575
PvuII	CAGCTG	1 cut(s)	425
RsaI	GTAC	1 cut(s)	210
RsaNI	GTAC	1 cut(s)	209
SalI	GTCGAC	1 cut(s)	465
SaqAI	TTAA	4 cut(s)	29, 387, 570, 623
SatI	GCNGC	4 cut(s)	95, 423, 456, 602
Sau96I	GGNCC	2 cut(s)	443, 575
SchI	GAGTC	2 cut(s)	305, 582
ScrFI	CCNGG	2 cut(s)	18, 580
SduI	GDGCHC	1 cut(s)	665
SfaNI	GCATC	1 cut(s)	444
SfcI	CTRYAG	1 cut(s)	305
Sse9I	AATT	3 cut(s)	31, 39, 312
SsiI	CCGC	3 cut(s)	84, 223, 240
SspI	AATATT	1 cut(s)	110
SspMI	CTAG	2 cut(s)	98, 275
StyD4I	CCNGG	2 cut(s)	16, 578
StyI	CCWWGG	2 cut(s)	246, 532
TaqI	TCGA	3 cut(s)	294, 379, 466
TasI	AATT	3 cut(s)	31, 39, 312
TfiI	GAWTC	1 cut(s)	337
Tru1I	TTAA	4 cut(s)	29, 387, 570, 623
Tru9I	TTAA	4 cut(s)	29, 387, 570, 623
TseI	GCWGC	4 cut(s)	94, 422, 455, 601
TspDTI	ATGAA	2 cut(s)	131, 339
XapI	RAATTY	1 cut(s)	312
XceI	RCATGY	2 cut(s)	378, 435
XmiI	GTMKAC	1 cut(s)	466
XmnI	GAANNNNTTC	1 cut(s)	336
XspI	CTAG	2 cut(s)	98, 275
Zsp2I	ATGCAT	1 cut(s)	437

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.