Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr00

Orthogroup ID

OG0002964

Physical Location & Seq

Genomic Coordinates Forward (+)

36983406 .. 36984982

Gene Structure 1577 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD00G1163900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 837 bp

ATGGGCTATCTGAATGAGAGCCTTTCAGTTGCCGAAAATGGGTTACTAGATCAATGGGTACGTGCTGGTTCAAGAGTGGCACTTCAAAGGAGAGTCCTTCGCTTAGGAAAACCACCAAGGCGATGGAAAACACCTAGTTTTGCAGAGTCTGTCAAGAGGAAGATTGTCGAGGTTCATGTACAAGGGAGACCTCTAAATTCGGTGATTGGTATGAAGAGCAGGTTTTATGGAGAAGATGGAGAGCAATGTGGGGTAGAGCAGCTAGCATTGCAGCATTATGCTGGGGAAGGGTGGCAGGGTGTTCATTCAGAAAGTGGCATTTGGTTGACTATTTTTGGGCTTCTTATGTGGGATATTATATTTTCTGATATACCAAATGTTTTCCGCACCAGATTTCAGATTGCTCCCTTGGATTTGCAAACTGATAGCTTTTATCTGGTGAGAAAGAGCCATATGGAATCTCACTTACAGAAAATTCATGATGGCATGGCTGAGGAGATCCTCATCACTTCATGGGAGTTACACGAAGGAACATCATGCAGAGGAGTTAATTGGGACCGTCATTCCCTGTCCGAGCTTCGAGCAGCTGTTACGTGCATTGGTGGCCCTTGTTTGGCCTCATTCTGTCGACATCTAGCACAAGATTATCGCAGCTGGTCAAGCGGAATGCCAGATTTACTGCTGTGGCGCTTCCATGGGAAATACAAAGGTGAAGCCAAGCTTGTCGAAGTTAAAGGCCCCAGGGATAGACTCTCTGAACAGCAGCGAGCATGGCTGCTGCTTTTCATGGACTGTGGGTTCAACGCTGAGGTCTGTAAAGTGATCCCTGTCTTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000280 GO:0003674 GO:0003676 GO:0003677 GO:0003824 GO:0004518 GO:0004519 GO:0004520 GO:0004527 GO:0004536 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006281 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007049 GO:0007059 GO:0007127 GO:0007129 GO:0008150 GO:0008152 GO:0008409 GO:0009987 GO:0016043 GO:0016787 GO:0016788 GO:0016888 GO:0016893 GO:0017108 GO:0022402 GO:0022414 GO:0033554 GO:0034641 GO:0036297 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0045132 GO:0045143 GO:0046483 GO:0048256 GO:0048285 GO:0050896 GO:0051276 GO:0051321 GO:0051716 GO:0061982 GO:0070192 GO:0070336 GO:0071704 GO:0071840 GO:0090304 GO:0090305 GO:0097159 GO:0098813 GO:0140013 GO:0140097 GO:1901360 GO:1901363 GO:1903046

KEGG Pathways

Metabolic & Signaling

ko03460 map03460

Pfam Domains

Protein Families

HIRAN VRR_NUC

Protein Analysis

279

Amino Acids

31.75

Weight (kDa)

8.46

Isoelectric Point (pI)

45.45

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
VRR_NUC	PF08774	161 - 274	3.2e-37	VRR-NUC domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002964)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G48360 AT1G48360 AT1G48360 AT1G48360 AT1G48360 AT1G48360
fragaria_vesca	FvH4_4g12370 FvH4_4g12370 FvH4_4g12370 FvH4_4g12370 FvH4_4g12370 FvH4_4g12370 FvH4_4g12370 FvH4_4g12370
malus_domestica	MD00G1163900.v1.1 MD09G1250200.v1.1 MD09G1250400.v1.1
prunus_persica	Prupe.1G176700_v2.0.a1 Prupe.1G176700_v2.0.a1 Prupe.1G176700_v2.0.a1 Prupe.1G176700_v2.0.a1 Prupe.1G176700_v2.0.a1
pyrus_communis	pycom04g02280 pycom13g29380
rosa_chinensis	RchiOBHm_Chr4g0410481
rosa_laevigata	RLG00000008424
rosa_multiflora	Rmu_sc0001969.1_g000008 Rmu_sc0016181.1_g000004
rosa_roxburghii	Rroxscaffold_5G00355290
rosa_rugosa	Rorug04G0114400
rosa_samantha	Rh4AG160900 Rh4BG160300 Rh4CG173100 Rh4DG156400
rosa_wichuraiana	Rw0G014390 Rw0G014400 Rw4G013420 Rw4G037760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	210
AccI	GTMKAC	1 cut(s)	628
AciI	CCGC	2 cut(s)	385, 663
AclWI	GGATC	2 cut(s)	493, 817
AcsI	RAATTY	2 cut(s)	196, 474
AfaI	GTAC	2 cut(s)	60, 180
AfiI	CCNNNNNNNGG	2 cut(s)	39, 613
AgsI	TTSAA	3 cut(s)	72, 86, 802
AjnI	CCWGG	1 cut(s)	740
AloI	GAACNNNNNNTCC	2 cut(s)	782, 814
AluBI	AGCT	6 cut(s)	262, 429, 577, 587, 654, 721
AluI	AGCT	6 cut(s)	262, 429, 577, 587, 654, 721
Alw26I	GTCTC	1 cut(s)	181
AlwI	GGATC	2 cut(s)	493, 817
AlwNI	CAGNNNCTG	1 cut(s)	149
AoxI	GGCC	3 cut(s)	604, 615, 736
ApeKI	GCWGC	7 cut(s)	259, 271, 584, 651, 763, 775, 778
ApoI	RAATTY	2 cut(s)	196, 474
AspLEI	GCGC	1 cut(s)	690
AspS9I	GGNCC	3 cut(s)	556, 605, 737
AsuHPI	GGTGA	3 cut(s)	214, 451, 722
AsuNHI	GCTAGC	1 cut(s)	262
AvaII	GGWCC	1 cut(s)	556
BbvCI	CCTCAGC	2 cut(s)	492, 807
BbvI	GCAGC	7 cut(s)	271, 283, 596, 663, 762, 765, 775
BccI	CCATC	3 cut(s)	117, 230, 476
BciT130I	CCWGG	1 cut(s)	742
BcoDI	GTCTC	1 cut(s)	181
BfaI	CTAG	4 cut(s)	47, 135, 263, 635
BfoI	RGCGCY	1 cut(s)	691
BfuAI	ACCTGC	1 cut(s)	210
BisI	GCNGC	7 cut(s)	260, 272, 585, 652, 764, 776, 779
BlsI	GCNGC	7 cut(s)	261, 273, 586, 653, 765, 777, 780
Bme1390I	CCNGG	1 cut(s)	742
Bme18I	GGWCC	1 cut(s)	556
BmgT120I	GGNCC	3 cut(s)	556, 605, 737
BmiI	GGNNCC	2 cut(s)	557, 739
BmrFI	CCNGG	1 cut(s)	742
BmtI	GCTAGC	1 cut(s)	266
Bpu10I	CCTNAGC	3 cut(s)	103, 492, 807
BsaAI	YACGTR	2 cut(s)	62, 594
BsaBI	GATNNNNATC	1 cut(s)	503
BsaI	GGTCTC	1 cut(s)	181
BsaJI	CCNNGG	5 cut(s)	116, 408, 694, 740, 741
Bsc4I	CCNNNNNNNGG	2 cut(s)	39, 613
Bse3DI	GCAATG	2 cut(s)	251, 266
Bse8I	GATNNNNATC	1 cut(s)	503
BseBI	CCWGG	1 cut(s)	742
BseDI	CCNNGG	5 cut(s)	116, 408, 694, 740, 741
BseJI	GATNNNNATC	1 cut(s)	503
BseLI	CCNNNNNNNGG	2 cut(s)	39, 613
BseMI	GCAATG	2 cut(s)	251, 266
BseMII	CTCAG	2 cut(s)	483, 798
BseRI	GAGGAG	2 cut(s)	509, 558
BseXI	GCAGC	7 cut(s)	271, 283, 596, 663, 762, 765, 775
BseYI	CCCAGC	1 cut(s)	281
BshFI	GGCC	3 cut(s)	606, 617, 738
BslFI	GGGAC	1 cut(s)	569
BslI	CCNNNNNNNGG	2 cut(s)	39, 613
BsmAI	GTCTC	1 cut(s)	181
BsmFI	GGGAC	1 cut(s)	569
BsmI	GAATGC	1 cut(s)	672
BsnI	GGCC	3 cut(s)	606, 617, 738
Bso31I	GGTCTC	1 cut(s)	181
Bsp1407I	TGTACA	1 cut(s)	178
Bsp143I	GATC	3 cut(s)	49, 498, 822
Bsp19I	CCATGG	1 cut(s)	694
BspACI	CCGC	2 cut(s)	385, 663
BspANI	GGCC	3 cut(s)	606, 617, 738
BspCNI	CTCAG	2 cut(s)	484, 799
BspHI	TCATGA	1 cut(s)	478
BspLI	GGNNCC	2 cut(s)	557, 739
BspMI	ACCTGC	1 cut(s)	210
BspOI	GCTAGC	1 cut(s)	266
BspPI	GGATC	2 cut(s)	493, 817
BspQI	GCTCTTC	1 cut(s)	209
BspTNI	GGTCTC	1 cut(s)	181
BsrDI	GCAATG	2 cut(s)	251, 266
BsrGI	TGTACA	1 cut(s)	178
BssECI	CCNNGG	5 cut(s)	116, 408, 694, 740, 741
BssMI	GATC	3 cut(s)	49, 498, 822
BssT1I	CCWWGG	3 cut(s)	116, 408, 694
Bst2UI	CCWGG	1 cut(s)	742
Bst4CI	ACNGT	2 cut(s)	560, 794
Bst6I	CTCTTC	1 cut(s)	209
BstAUI	TGTACA	1 cut(s)	178
BstBAI	YACGTR	2 cut(s)	62, 594
BstC8I	GCNNGC	2 cut(s)	264, 768
BstDEI	CTNAG	3 cut(s)	103, 492, 807
BstDSI	CCRYGG	1 cut(s)	694
BstH2I	RGCGCY	1 cut(s)	691
BstHHI	GCGC	1 cut(s)	690
BstKTI	GATC	3 cut(s)	52, 501, 825
BstMAI	GTCTC	1 cut(s)	181
BstMBI	GATC	3 cut(s)	49, 498, 822
BstMWI	GCNNNNNNNGC	4 cut(s)	268, 603, 660, 772
BstNI	CCWGG	1 cut(s)	742
BstSCI	CCNGG	1 cut(s)	740
BstV1I	GCAGC	7 cut(s)	271, 283, 596, 663, 762, 765, 775
BstX2I	RGATCY	1 cut(s)	498
BstXI	CCANNNNNNTGG	1 cut(s)	123
BstYI	RGATCY	1 cut(s)	498
BsuRI	GGCC	3 cut(s)	606, 617, 738
BtgI	CCRYGG	1 cut(s)	694
BtgZI	GCGATG	1 cut(s)	136
BveI	ACCTGC	1 cut(s)	210
Cac8I	GCNNGC	2 cut(s)	264, 768
CaiI	CAGNNNCTG	1 cut(s)	149
CciI	TCATGA	1 cut(s)	478
CfoI	GCGC	1 cut(s)	690
Cfr13I	GGNCC	3 cut(s)	556, 605, 737
Csp6I	GTAC	2 cut(s)	59, 179
CviAII	CATG	8 cut(s)	176, 479, 487, 513, 537, 695, 771, 787
CviQI	GTAC	2 cut(s)	59, 179
DdeI	CTNAG	3 cut(s)	103, 492, 807
DpnI	GATC	3 cut(s)	51, 500, 824
DpnII	GATC	3 cut(s)	49, 498, 822
Eam1104I	CTCTTC	1 cut(s)	209
EarI	CTCTTC	1 cut(s)	209
Eco130I	CCWWGG	3 cut(s)	116, 408, 694
Eco31I	GGTCTC	1 cut(s)	181
Eco47I	GGWCC	1 cut(s)	556
EcoO109I	RGGNCCY	1 cut(s)	737
EcoRII	CCWGG	1 cut(s)	740
EcoT14I	CCWWGG	3 cut(s)	116, 408, 694
ErhI	CCWWGG	3 cut(s)	116, 408, 694
FaeI	CATG	8 cut(s)	179, 482, 490, 516, 540, 698, 774, 790
FalI	AAGNNNNNCTT	2 cut(s)	705, 737
FaqI	GGGAC	1 cut(s)	569
FatI	CATG	8 cut(s)	175, 478, 486, 512, 536, 694, 770, 786
FauNDI	CATATG	1 cut(s)	453
FblI	GTMKAC	1 cut(s)	628
Fnu4HI	GCNGC	7 cut(s)	260, 272, 585, 652, 764, 776, 779
Fsp4HI	GCNGC	7 cut(s)	260, 272, 585, 652, 764, 776, 779
FspBI	CTAG	4 cut(s)	47, 135, 263, 635
GlaI	GCGC	1 cut(s)	689
GluI	GCNGC	7 cut(s)	260, 272, 585, 652, 764, 776, 779
GsaI	CCCAGC	1 cut(s)	285
HaeII	RGCGCY	1 cut(s)	691
HaeIII	GGCC	3 cut(s)	606, 617, 738
HhaI	GCGC	1 cut(s)	690
Hin1II	CATG	8 cut(s)	179, 482, 490, 516, 540, 698, 774, 790
Hin6I	GCGC	1 cut(s)	688
HinP1I	GCGC	1 cut(s)	688
HincII	GTYRAC	2 cut(s)	327, 629
HindII	GTYRAC	2 cut(s)	327, 629
HindIII	AAGCTT	1 cut(s)	719
HinfI	GANTC	4 cut(s)	93, 146, 458, 750
HphI	GGTGA	3 cut(s)	214, 451, 722
Hpy166II	GTNNAC	2 cut(s)	327, 629
Hpy188I	TCNGA	6 cut(s)	12, 310, 367, 399, 574, 757
Hpy188III	TCNNGA	3 cut(s)	72, 154, 479
Hpy8I	GTNNAC	2 cut(s)	327, 629
HpyAV	CCTTC	3 cut(s)	107, 281, 521
HpyCH4III	ACNGT	2 cut(s)	560, 794
HpyCH4IV	ACGT	2 cut(s)	61, 593
HpyCH4V	TGCA	5 cut(s)	143, 271, 418, 540, 597
HpyF10VI	GCNNNNNNNGC	4 cut(s)	268, 603, 660, 772
HpyF3I	CTNAG	3 cut(s)	103, 492, 807
HpySE526I	ACGT	2 cut(s)	61, 593
Hsp92II	CATG	8 cut(s)	179, 482, 490, 516, 540, 698, 774, 790
HspAI	GCGC	1 cut(s)	688
Kzo9I	GATC	3 cut(s)	49, 498, 822
LguI	GCTCTTC	1 cut(s)	209
LmnI	GCTCC	1 cut(s)	409
Lsp1109I	GCAGC	7 cut(s)	271, 283, 596, 663, 762, 765, 775
MaeI	CTAG	4 cut(s)	47, 135, 263, 635
MaeII	ACGT	2 cut(s)	61, 593
MaeIII	GTNAC	3 cut(s)	42, 519, 589
MalI	GATC	3 cut(s)	51, 500, 824
MboI	GATC	3 cut(s)	49, 498, 822
MboII	GAAGA	3 cut(s)	172, 226, 245
MflI	RGATCY	1 cut(s)	498
MluCI	AATT	3 cut(s)	196, 474, 550
MlyI	GAGTC	3 cut(s)	102, 155, 744
MnlI	CCTC	8 cut(s)	150, 163, 201, 487, 512, 536, 628, 802
MseI	TTAA	2 cut(s)	549, 732
MspA1I	CMGCKG	2 cut(s)	587, 654
MspR9I	CCNGG	1 cut(s)	742
Mva1269I	GAATGC	1 cut(s)	672
MvaI	CCWGG	1 cut(s)	742
MwoI	GCNNNNNNNGC	4 cut(s)	268, 603, 660, 772
NcoI	CCATGG	1 cut(s)	694
NdeI	CATATG	1 cut(s)	453
NdeII	GATC	3 cut(s)	49, 498, 822
NheI	GCTAGC	1 cut(s)	262
NlaIII	CATG	8 cut(s)	179, 482, 490, 516, 540, 698, 774, 790
NlaIV	GGNNCC	2 cut(s)	557, 739
PagI	TCATGA	1 cut(s)	478
PasI	CCCWGGG	1 cut(s)	741
PciSI	GCTCTTC	1 cut(s)	209
PctI	GAATGC	1 cut(s)	672
PfeI	GAWTC	1 cut(s)	458
PkrI	GCNGC	7 cut(s)	261, 273, 586, 653, 765, 777, 780
PleI	GAGTC	3 cut(s)	101, 154, 744
PpsI	GAGTC	3 cut(s)	101, 154, 744
Ppu21I	YACGTR	2 cut(s)	62, 594
Psp6I	CCWGG	1 cut(s)	740
PspFI	CCCAGC	1 cut(s)	281
PspGI	CCWGG	1 cut(s)	740
PspN4I	GGNNCC	2 cut(s)	557, 739
PspPI	GGNCC	3 cut(s)	556, 605, 737
PstNI	CAGNNNCTG	1 cut(s)	149
PsuI	RGATCY	1 cut(s)	498
PvuII	CAGCTG	2 cut(s)	587, 654
RsaI	GTAC	2 cut(s)	60, 180
RsaNI	GTAC	2 cut(s)	59, 179
SalI	GTCGAC	1 cut(s)	627
SapI	GCTCTTC	1 cut(s)	209
SaqAI	TTAA	2 cut(s)	549, 732
SatI	GCNGC	7 cut(s)	260, 272, 585, 652, 764, 776, 779
Sau3AI	GATC	3 cut(s)	49, 498, 822
Sau96I	GGNCC	3 cut(s)	556, 605, 737
SchI	GAGTC	3 cut(s)	102, 155, 744
ScrFI	CCNGG	1 cut(s)	742
SinI	GGWCC	1 cut(s)	556
Sse9I	AATT	3 cut(s)	196, 474, 550
SsiI	CCGC	2 cut(s)	385, 663
SspMI	CTAG	4 cut(s)	47, 135, 263, 635
StyD4I	CCNGG	1 cut(s)	740
StyI	CCWWGG	3 cut(s)	116, 408, 694
TaaI	ACNGT	2 cut(s)	560, 794
TaiI	ACGT	2 cut(s)	64, 596
TaqI	TCGA	4 cut(s)	168, 580, 628, 726
TasI	AATT	3 cut(s)	196, 474, 550
TatI	WGTACW	1 cut(s)	178
TfiI	GAWTC	1 cut(s)	458
Tru1I	TTAA	2 cut(s)	549, 732
Tru9I	TTAA	2 cut(s)	549, 732
TseI	GCWGC	7 cut(s)	259, 271, 584, 651, 763, 775, 778
TspDTI	ATGAA	6 cut(s)	164, 227, 293, 467, 501, 775
VpaK11BI	GGWCC	1 cut(s)	556
XapI	RAATTY	2 cut(s)	196, 474
XcmI	CCANNNNNNNNNTGG	1 cut(s)	120
XmiI	GTMKAC	1 cut(s)	628
XspI	CTAG	4 cut(s)	47, 135, 263, 635

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.