Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr4

Orthogroup ID

OG0002964

Physical Location & Seq

Genomic Coordinates Forward (+)

64255864 .. 64265863

Gene Structure 10000 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw4G037760.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2559 bp

ATGCTGATCTCCCACATGCCCTGGCAGAACCACTCAAATAAGATAATCAAGAAACTGCTAAAAAAGAAGCTCGACGACGCTAAGGGATTATGGGCTGAAAAACTACCGGAAGTGCTATGGGCCATCAGAACTACCCCAACTTCCACCACTAGTGAAACACCATTCTGCATGATTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGAGGCTGTTGAATAGTCAAAATCAGGTTGACAGTCCATCCAGAGAGCCAATCAATAAGGACGAGATCAGTGAGGTGCCGGATTTTGATGTGACCATCACTCAGGACGACATATATGGGGTGATTCTTGAAACTTTTATTGTTGGCCGCAGCATTTATCTCTCAAGAGATCCTGATAATGTTAAGGATCCTAATGCTATCAAGGTTGTTTATTCAGATTCAGGATGCCTTAAAGTGCTTGGTTTTCTCCCTCGCAAGCTAGCTGAGTATTTGTCTCCTCTGATAGATCAGTATCGTCTAAATTTTGAGGGATGCGTTATCTCTGTTCCCAAACGTTCTATTGATGTTGTCCCAATACAGATAGTGTGTCACAAGACCAGTGATAATAAGGACTTTAATGATGACAAGGTTTTCAAATGTTTATGGAGAAATGCTCTGCAAGTAATTGAATCTACAAAGTCCTGTCCGCCCAGTGCAATAAAATATCAGGATAACTTTTGTGTTTTCATACGTGAGGTTTTGAGAAACAGTTCTCACCTCTTGACAGATGATGAAAAGAATTTCATCAAGTCATTTACTTCGATGTCAGATGATAGTCAGAGGCTATTTGTTCGACTTTATACACGGAAGGTTTGCCCATGGTTTCGGCTGTCTGCTATTTCATACCCAGAAGTACTGGATCCCCAACAAGCAGTGAAAGAGCTATCTGAGACAGGGTATGCATCTTGCTTTGAAATTACAAATAAACTATCTGATGATTGTATTAAGGAGATTTTGGATTTGCTCACTGTATCTGAGCTACGTGAAATCTTGTGCATCCTTAAGCAGAGTTGCAAACGTGGCCTAAGAAAGCAGGATCTCATTGCATCTCTTATATCTTCTTACGATGAAGATTTGTGCCCATTACTACCTAGTATGGTTTTGCACAGAACAGGATCCTGTGTTAGGATATCTTCAAATGCGGAGTCCCTTATCTGGCGTGCTGAGAGGCTTTTCTTCCTGAATGGTGAACAGGATCTCTCGGCATTTCTACTGGTGGATTTGGGAATAGTCAAGTATCCAACTTACAAGTGCATAGTCTCACAACAAATTTTCTCAGCTCGAGATGATTTACTTGGCTATGAAGAGGCTATTGAAGTGGCACAAATAGTTGATGAAGCTCTTGATGGAAGCAACACTGGAGTGGTCTTAAAGTGCATAAAGATAGCTGATTCCCATTTATCCAATCCGGTTCAATCCTTGACCTCTGAATCAATGGCTCCATTCCTTTCCCACTTTTCAGCTACATTTGTCTACTCAAAAGTGGTTTTACTAGGAATTTCTTTTCTTGAGCGTGAGCACAGGTACAATGATGCTATCTATTTACTGAAAAGGCTGCTGAATTGTTTCGCTCGTGATGGTAGAAGAGGATACTGGACACTACGGTTATCAATTGATTTGGAGCACATGGGCTATCTGAATGAGAGCCTTTTGGTTGCTGAAAATGGGTTACTAGATGAATGGGTGCGTGCTGGTTCAAGAGTGGCACTTCAAAGGAGAGTCCTTCGCTTGGGAAAACCACCGAGGCGATGGAAAACTCCTAGTTTTGCAGAGTCTGTCAAGAGGAAGATCATGGAGGTAAATGTTCCAGGGAGACCTTTAAATTGTGCAATTGGCACAAAGAGCAGGTTTTATGGAGAAGATGGGGAGCAATGCGGTGTAGAGCAGCTAGCTCTGCAATATTATGCCGAGGAAGGTGGATGGCAGGGTGTTCATACAGAGAGTGGCATTTGGTTGACTATTTTTGGACTTCTTATGTGGGATATTATATTTTCCAATGTACCAAATGTCTTCCGCACCAGATTTCAGACCGCTCCCTTGGATTTAGAGACTGATAGCTTTTATCTAGTGAGAAAGAACCATATCGAGTCTCACCTACAGAAAATTCTTGATGGCATGGCTGAAGAGATTCTCATCACTTCATGGGAGTTACATGAGGGAACAGCATGTCGAGGAGTTAACTGGGGGCGACATTCCCTCTCTGAGCTTCGGGCAGCTGTTACATGCATCGGTGGCCCATGTGTGGCTGCATTTTGTCGACATCTTGCACAAGATTATCGTAGTTGGTCAAGTGGAATGCCAGATTTACTTCTGTGGCGCTTCCATGGGAAATACAGAGGTGAAGCGAAGCTTGTTGAAGTTAAAGGCCCCAGGGATAGACTCTCTGAACAGCAGCGAGCATGGCTATTGCTTTTAATGGATTGTGGGTTCAATGCCGAGGTCTGTAAAGTGAGCCCTATTGTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000280 GO:0003674 GO:0003676 GO:0003677 GO:0003824 GO:0004518 GO:0004519 GO:0004520 GO:0004527 GO:0004536 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006281 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007049 GO:0007059 GO:0007127 GO:0007129 GO:0008150 GO:0008152 GO:0008409 GO:0009987 GO:0016043 GO:0016787 GO:0016788 GO:0016888 GO:0016893 GO:0017108 GO:0022402 GO:0022414 GO:0033554 GO:0034641 GO:0036297 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0045132 GO:0045143 GO:0046483 GO:0048256 GO:0048285 GO:0050896 GO:0051276 GO:0051321 GO:0051716 GO:0061982 GO:0070192 GO:0070336 GO:0071704 GO:0071840 GO:0090304 GO:0090305 GO:0097159 GO:0098813 GO:0140013 GO:0140097 GO:1901360 GO:1901363 GO:1903046

KEGG Pathways

Metabolic & Signaling

ko03460 map03460

Pfam Domains

Protein Families

HIRAN VRR_NUC

Protein Analysis

852

Amino Acids

93.18

Weight (kDa)

6.5

Isoelectric Point (pI)

43.36

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HIRAN	PF08797	139 - 203	4.9e-12	HIRAN domain
FAN1_HTH	PF21315	253 - 332	1.2e-14	FAN1, HTH domain
FAN1_TPR	PF21170	461 - 608	2e-13	Fanconi-associated nuclease 1, TPR domain
VRR_NUC	PF08774	736 - 849	2.9e-36	VRR-NUC domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002964)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G48360 AT1G48360 AT1G48360 AT1G48360 AT1G48360 AT1G48360
fragaria_vesca	FvH4_4g12370 FvH4_4g12370 FvH4_4g12370 FvH4_4g12370 FvH4_4g12370 FvH4_4g12370 FvH4_4g12370 FvH4_4g12370
malus_domestica	MD00G1163900.v1.1 MD09G1250200.v1.1 MD09G1250400.v1.1
prunus_persica	Prupe.1G176700_v2.0.a1 Prupe.1G176700_v2.0.a1 Prupe.1G176700_v2.0.a1 Prupe.1G176700_v2.0.a1 Prupe.1G176700_v2.0.a1
pyrus_communis	pycom04g02280 pycom13g29380
rosa_chinensis	RchiOBHm_Chr4g0410481
rosa_laevigata	RLG00000008424
rosa_multiflora	Rmu_sc0001969.1_g000008 Rmu_sc0016181.1_g000004
rosa_roxburghii	Rroxscaffold_5G00355290
rosa_rugosa	Rorug04G0114400
rosa_samantha	Rh4AG160900 Rh4BG160300 Rh4CG173100 Rh4DG156400
rosa_wichuraiana	Rw0G014390 Rw0G014400 Rw4G013420 Rw4G037760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	1929
AccB1I	GGYRCC	1 cut(s)	349
AccBSI	CCGCTC	1 cut(s)	2126
AccI	GTMKAC	2 cut(s)	1566, 2350
AciI	CCGC	6 cut(s)	421, 740, 1235, 1968, 2107, 2124
AclI	AACGTT	1 cut(s)	607
AclWI	GGATC	9 cut(s)	437, 455, 468, 947, 960, 1137, 1203, 1216, 1296
AcoI	YGGCCR	1 cut(s)	418
AcsI	RAATTY	5 cut(s)	574, 832, 1362, 1590, 2196
AcuI	CTGAAG	1 cut(s)	2235
AfaI	GTAC	3 cut(s)	948, 1619, 2094
AfiI	CCNNNNNNNGG	4 cut(s)	1218, 1248, 1822, 2335
AflII	CTTAAG	1 cut(s)	1094
AhlI	ACTAGT	1 cut(s)	149
AjnI	CCWGG	3 cut(s)	20, 1900, 2462
AleI	CACNNNNGTG	1 cut(s)	1454
AloI	GAACNNNNNNTCC	2 cut(s)	2504, 2536
Alw21I	GWGCWC	2 cut(s)	1614, 1719
Alw26I	GTCTC	6 cut(s)	552, 977, 1357, 1900, 2135, 2187
AlwI	GGATC	9 cut(s)	437, 455, 468, 947, 960, 1137, 1203, 1216, 1296
AlwNI	CAGNNNCTG	1 cut(s)	1868
Ama87I	CYCGRG	1 cut(s)	1374
AoxI	GGCC	5 cut(s)	120, 418, 1114, 2326, 2458
ApeKI	GCWGC	6 cut(s)	423, 1648, 1978, 2306, 2339, 2485
ApoI	RAATTY	5 cut(s)	574, 832, 1362, 1590, 2196
ArsI	GACNNNNNNTTYG	2 cut(s)	1223, 1255
Asp700I	GAANNNNTTC	3 cut(s)	802, 1658, 2220
AspLEI	GCGC	1 cut(s)	2412
AspS9I	GGNCC	3 cut(s)	120, 2327, 2459
AsuHPI	GGTGA	5 cut(s)	406, 800, 1292, 2177, 2444
AsuNHI	GCTAGC	2 cut(s)	532, 1981
AvaI	CYCGRG	1 cut(s)	1374
BaeGI	GKGCMC	1 cut(s)	1175
BamHI	GGATCC	3 cut(s)	460, 952, 1208
BanI	GGYRCC	1 cut(s)	349
BanII	GRGCYC	1 cut(s)	2549
BauI	CACGAG	1 cut(s)	1665
BbsI	GAAGAC	1 cut(s)	2095
Bbv12I	GWGCWC	2 cut(s)	1614, 1719
BbvI	GCAGC	6 cut(s)	435, 1635, 1990, 2318, 2326, 2497
BccI	CCATC	9 cut(s)	131, 319, 377, 1433, 1664, 1836, 1949, 2007, 2198
BciT130I	CCWGG	3 cut(s)	22, 1902, 2464
BciVI	GTATCC	2 cut(s)	1341, 1676
BcoDI	GTCTC	6 cut(s)	552, 977, 1357, 1900, 2135, 2187
BcuI	ACTAGT	1 cut(s)	149
BfaI	CTAG	8 cut(s)	150, 533, 1185, 1586, 1766, 1854, 1982, 2159
BfmI	CTRYAG	1 cut(s)	2189
BfoI	RGCGCY	1 cut(s)	2413
BfrI	CTTAAG	1 cut(s)	1094
BfuAI	ACCTGC	1 cut(s)	1929
BfuI	GTATCC	2 cut(s)	1341, 1676
BisI	GCNGC	7 cut(s)	421, 424, 1649, 1979, 2307, 2340, 2486
BlsI	GCNGC	7 cut(s)	422, 425, 1650, 1980, 2308, 2341, 2487
BmcAI	AGTACT	1 cut(s)	948
Bme1390I	CCNGG	3 cut(s)	22, 1902, 2464
BmeT110I	CYCGRG	1 cut(s)	1374
BmgT120I	GGNCC	3 cut(s)	120, 2327, 2459
BmiI	GGNNCC	6 cut(s)	351, 462, 954, 1210, 1533, 2461
BmrFI	CCNGG	3 cut(s)	22, 1902, 2464
BmrI	ACTGGG	2 cut(s)	738, 2284
BmsI	GCATC	7 cut(s)	488, 575, 1004, 1098, 1148, 1615, 2328
BmtI	GCTAGC	2 cut(s)	536, 1985
BmuI	ACTGGG	2 cut(s)	738, 2284
BpiI	GAAGAC	1 cut(s)	2095
BplI	GAGNNNNNCTC	2 cut(s)	691, 723
BpmI	CTGGAG	1 cut(s)	1473
Bpu10I	CCTNAGC	1 cut(s)	81
BpuEI	CTTGAG	2 cut(s)	421, 1622
BsaAI	YACGTR	2 cut(s)	785, 1076
BsaBI	GATNNNNATC	2 cut(s)	564, 2225
BsaI	GGTCTC	1 cut(s)	1900
BsaWI	WCCGGW	2 cut(s)	106, 1501
Bsc4I	CCNNNNNNNGG	4 cut(s)	1218, 1248, 1822, 2335
Bse1I	ACTGG	7 cut(s)	651, 744, 954, 1311, 1456, 1691, 2279
Bse3DI	GCAATG	2 cut(s)	1134, 1970
Bse8I	GATNNNNATC	2 cut(s)	564, 2225
BseBI	CCWGG	3 cut(s)	22, 1902, 2464
BseGI	GGATG	5 cut(s)	311, 503, 590, 1089, 2018
BseJI	GATNNNNATC	2 cut(s)	564, 2225
BseLI	CCNNNNNNNGG	4 cut(s)	1218, 1248, 1822, 2335
BseMI	GCAATG	2 cut(s)	1134, 1970
BseMII	CTCAG	7 cut(s)	389, 528, 972, 1059, 1248, 1383, 2286
BseNI	ACTGG	7 cut(s)	651, 744, 954, 1311, 1456, 1691, 2279
BseRI	GAGGAG	2 cut(s)	540, 2280
BseSI	GKGCMC	1 cut(s)	1175
BseXI	GCAGC	6 cut(s)	435, 1635, 1990, 2318, 2326, 2497
BshFI	GGCC	5 cut(s)	122, 420, 1116, 2328, 2460
BshNI	GGYRCC	1 cut(s)	349
BsiHKAI	GWGCWC	2 cut(s)	1614, 1719
BsiHKCI	CYCGRG	1 cut(s)	1374
BsiSI	CCGG	3 cut(s)	107, 353, 1502
BslFI	GGGAC	2 cut(s)	608, 1225
BslI	CCNNNNNNNGG	4 cut(s)	1218, 1248, 1822, 2335
BsmAI	GTCTC	6 cut(s)	552, 977, 1357, 1900, 2135, 2187
BsmFI	GGGAC	2 cut(s)	608, 1225
BsmI	GAATGC	1 cut(s)	2394
BsnI	GGCC	5 cut(s)	122, 420, 1116, 2328, 2460
Bso31I	GGTCTC	1 cut(s)	1900
BsoBI	CYCGRG	1 cut(s)	1374
Bsp1286I	GDGCHC	4 cut(s)	1175, 1614, 1719, 2549
Bsp19I	CCATGG	2 cut(s)	911, 2416
BspACI	CCGC	6 cut(s)	421, 740, 1235, 1968, 2107, 2124
BspANI	GGCC	5 cut(s)	122, 420, 1116, 2328, 2460
BspCNI	CTCAG	7 cut(s)	388, 529, 973, 1060, 1249, 1382, 2287
BspLI	GGNNCC	6 cut(s)	351, 462, 954, 1210, 1533, 2461
BspMI	ACCTGC	1 cut(s)	1929
BspOI	GCTAGC	2 cut(s)	536, 1985
BspPI	GGATC	9 cut(s)	437, 455, 468, 947, 960, 1137, 1203, 1216, 1296
BspT107I	GGYRCC	1 cut(s)	349
BspTI	CTTAAG	1 cut(s)	1094
BspTNI	GGTCTC	1 cut(s)	1900
BsrBI	CCGCTC	1 cut(s)	2126
BsrDI	GCAATG	2 cut(s)	1134, 1970
BsrI	ACTGG	7 cut(s)	651, 744, 954, 1311, 1456, 1691, 2279
BssSI	CACGAG	1 cut(s)	1665
BssT1I	CCWWGG	3 cut(s)	911, 2130, 2416
Bst2BI	CACGAG	1 cut(s)	1665
Bst2UI	CCWGG	3 cut(s)	22, 1902, 2464
Bst4CI	ACNGT	4 cut(s)	308, 803, 1063, 1698
Bst6I	CTCTTC	3 cut(s)	1392, 1672, 2211
BstAFI	CTTAAG	1 cut(s)	1094
BstBAI	YACGTR	2 cut(s)	785, 1076
BstC8I	GCNNGC	6 cut(s)	530, 534, 1254, 1782, 1983, 2490
BstDEI	CTNAG	9 cut(s)	81, 375, 537, 981, 1068, 1118, 1257, 1369, 2295
BstDSI	CCRYGG	2 cut(s)	911, 2416
BstENI	CCTNNNNNAGG	1 cut(s)	1216
BstF5I	GGATG	5 cut(s)	311, 503, 590, 1089, 2018
BstH2I	RGCGCY	1 cut(s)	2413
BstHHI	GCGC	1 cut(s)	2412
BstMAI	GTCTC	6 cut(s)	552, 977, 1357, 1900, 2135, 2187
BstMWI	GCNNNNNNNGC	5 cut(s)	1113, 1935, 1987, 2325, 2494
BstNI	CCWGG	3 cut(s)	22, 1902, 2464
BstNSI	RCATGY	3 cut(s)	19, 2262, 2319
BstSCI	CCNGG	3 cut(s)	20, 1900, 2462
BstSFI	CTRYAG	1 cut(s)	2189
BstSLI	GKGCMC	1 cut(s)	1175
BstV1I	GCAGC	6 cut(s)	435, 1635, 1990, 2318, 2326, 2497
BstV2I	GAAGAC	1 cut(s)	2095
BstX2I	RGATCY	6 cut(s)	442, 460, 952, 1129, 1208, 1288
BstYI	RGATCY	6 cut(s)	442, 460, 952, 1129, 1208, 1288
BsuI	GTATCC	2 cut(s)	1341, 1676
BsuRI	GGCC	5 cut(s)	122, 420, 1116, 2328, 2460
BtgI	CCRYGG	2 cut(s)	911, 2416
BtgZI	GCGATG	1 cut(s)	1855
BtsCI	GGATG	5 cut(s)	311, 503, 590, 1089, 2018
BtsI	GCAGTG	1 cut(s)	972
BtsIMutI	CAGTG	6 cut(s)	349, 658, 751, 972, 1059, 1449
BveI	ACCTGC	1 cut(s)	1929
Cac8I	GCNNGC	6 cut(s)	530, 534, 1254, 1782, 1983, 2490
CaiI	CAGNNNCTG	1 cut(s)	1868
CfoI	GCGC	1 cut(s)	2412
Cfr13I	GGNCC	3 cut(s)	120, 2327, 2459
CseI	GACGC	1 cut(s)	86
Csp6I	GTAC	3 cut(s)	947, 1618, 2093
CviQI	GTAC	3 cut(s)	947, 1618, 2093
DdeI	CTNAG	9 cut(s)	81, 375, 537, 981, 1068, 1118, 1257, 1369, 2295
DraI	TTTAAA	1 cut(s)	1914
EaeI	YGGCCR	1 cut(s)	418
Eam1104I	CTCTTC	3 cut(s)	1392, 1672, 2211
EarI	CTCTTC	3 cut(s)	1392, 1672, 2211
EciI	GGCGGA	1 cut(s)	729
Eco130I	CCWWGG	3 cut(s)	911, 2130, 2416
Eco24I	GRGCYC	1 cut(s)	2549
Eco31I	GGTCTC	1 cut(s)	1900
Eco32I	GATATC	1 cut(s)	1224
Eco57I	CTGAAG	1 cut(s)	2235
Eco88I	CYCGRG	1 cut(s)	1374
EcoNI	CCTNNNNNAGG	1 cut(s)	1216
EcoO109I	RGGNCCY	1 cut(s)	2459
EcoRII	CCWGG	3 cut(s)	20, 1900, 2462
EcoRV	GATATC	1 cut(s)	1224
EcoT14I	CCWWGG	3 cut(s)	911, 2130, 2416
EcoT22I	ATGCAT	2 cut(s)	997, 2321
EcoT38I	GRGCYC	1 cut(s)	2549
ErhI	CCWWGG	3 cut(s)	911, 2130, 2416
FalI	AAGNNNNNCTT	2 cut(s)	2427, 2459
FaqI	GGGAC	2 cut(s)	608, 1225
FblI	GTMKAC	2 cut(s)	1566, 2350
Fnu4HI	GCNGC	7 cut(s)	421, 424, 1649, 1979, 2307, 2340, 2486
FokI	GGATG	5 cut(s)	298, 510, 597, 1076, 2025
FriOI	GRGCYC	1 cut(s)	2549
Fsp4HI	GCNGC	7 cut(s)	421, 424, 1649, 1979, 2307, 2340, 2486
FspBI	CTAG	8 cut(s)	150, 533, 1185, 1586, 1766, 1854, 1982, 2159
GlaI	GCGC	1 cut(s)	2411
GluI	GCNGC	7 cut(s)	421, 424, 1649, 1979, 2307, 2340, 2486
GsuI	CTGGAG	1 cut(s)	1473
HaeII	RGCGCY	1 cut(s)	2413
HaeIII	GGCC	5 cut(s)	122, 420, 1116, 2328, 2460
HapII	CCGG	3 cut(s)	107, 353, 1502
HgaI	GACGC	1 cut(s)	86
HhaI	GCGC	1 cut(s)	2412
Hin6I	GCGC	1 cut(s)	2410
HinP1I	GCGC	1 cut(s)	2410
HincII	GTYRAC	4 cut(s)	304, 2049, 2272, 2351
HindII	GTYRAC	4 cut(s)	304, 2049, 2272, 2351
HindIII	AAGCTT	1 cut(s)	2441
HpaI	GTTAAC	1 cut(s)	2272
HpaII	CCGG	3 cut(s)	107, 353, 1502
HphI	GGTGA	5 cut(s)	406, 800, 1292, 2177, 2444
Hpy166II	GTNNAC	6 cut(s)	304, 1283, 1567, 2049, 2272, 2351
Hpy8I	GTNNAC	6 cut(s)	304, 1283, 1567, 2049, 2272, 2351
Hpy99I	CGWCG	2 cut(s)	77, 80
HpyAV	CCTTC	3 cut(s)	895, 1826, 2000
HpyCH4III	ACNGT	4 cut(s)	308, 803, 1063, 1698
HpyCH4IV	ACGT	4 cut(s)	607, 784, 1075, 1111
HpyF10VI	GCNNNNNNNGC	5 cut(s)	1113, 1935, 1987, 2325, 2494
HpyF3I	CTNAG	9 cut(s)	81, 375, 537, 981, 1068, 1118, 1257, 1369, 2295
HpySE526I	ACGT	4 cut(s)	607, 784, 1075, 1111
HspAI	GCGC	1 cut(s)	2410
KspAI	GTTAAC	1 cut(s)	2272
LmnI	GCTCC	4 cut(s)	1537, 1714, 1960, 2131
Lsp1109I	GCAGC	6 cut(s)	435, 1635, 1990, 2318, 2326, 2497
LweI	GCATC	7 cut(s)	488, 575, 1004, 1098, 1148, 1615, 2328
MaeI	CTAG	8 cut(s)	150, 533, 1185, 1586, 1766, 1854, 1982, 2159
MaeII	ACGT	4 cut(s)	607, 784, 1075, 1111
MaeIII	GTNAC	5 cut(s)	364, 641, 1761, 2241, 2311
MbiI	CCGCTC	1 cut(s)	2126
MfeI	CAATTG	2 cut(s)	1704, 1923
MflI	RGATCY	6 cut(s)	442, 460, 952, 1129, 1208, 1288
MhlI	GDGCHC	4 cut(s)	1175, 1614, 1719, 2549
MlyI	GAGTC	5 cut(s)	1247, 1821, 1874, 2189, 2466
MmeI	TCCRAC	1 cut(s)	1358
Mph1103I	ATGCAT	2 cut(s)	997, 2321
MroXI	GAANNNNTTC	3 cut(s)	802, 1658, 2220
MslI	CAYNNNNRTG	1 cut(s)	1454
MspA1I	CMGCKG	1 cut(s)	2309
MspCI	CTTAAG	1 cut(s)	1094
MspI	CCGG	3 cut(s)	107, 353, 1502
MspR9I	CCNGG	3 cut(s)	22, 1902, 2464
MunI	CAATTG	2 cut(s)	1704, 1923
Mva1269I	GAATGC	1 cut(s)	2394
MvaI	CCWGG	3 cut(s)	22, 1902, 2464
MwoI	GCNNNNNNNGC	5 cut(s)	1113, 1935, 1987, 2325, 2494
NcoI	CCATGG	2 cut(s)	911, 2416
NheI	GCTAGC	2 cut(s)	532, 1981
NlaIV	GGNNCC	6 cut(s)	351, 462, 954, 1210, 1533, 2461
NmeAIII	GCCGAG	3 cut(s)	1274, 2026, 2554
NmuCI	GTSAC	2 cut(s)	364, 641
NsiI	ATGCAT	2 cut(s)	997, 2321
NspI	RCATGY	3 cut(s)	19, 2262, 2319
OliI	CACNNNNGTG	1 cut(s)	1454
PaeR7I	CTCGAG	1 cut(s)	1374
PasI	CCCWGGG	1 cut(s)	2463
PctI	GAATGC	1 cut(s)	2394
PdmI	GAANNNNTTC	3 cut(s)	802, 1658, 2220
PfeI	GAWTC	6 cut(s)	397, 491, 722, 1484, 1523, 2221
PkrI	GCNGC	7 cut(s)	422, 425, 1650, 1980, 2308, 2341, 2487
PleI	GAGTC	5 cut(s)	1246, 1820, 1873, 2188, 2466
PpsI	GAGTC	5 cut(s)	1246, 1820, 1873, 2188, 2466
Ppu21I	YACGTR	2 cut(s)	785, 1076
Psp1406I	AACGTT	1 cut(s)	607
Psp6I	CCWGG	3 cut(s)	20, 1900, 2462
PspGI	CCWGG	3 cut(s)	20, 1900, 2462
PspN4I	GGNNCC	6 cut(s)	351, 462, 954, 1210, 1533, 2461
PspPI	GGNCC	3 cut(s)	120, 2327, 2459
PstNI	CAGNNNCTG	1 cut(s)	1868
PsuI	RGATCY	6 cut(s)	442, 460, 952, 1129, 1208, 1288
PvuII	CAGCTG	1 cut(s)	2309
RsaI	GTAC	3 cut(s)	948, 1619, 2094
RsaNI	GTAC	3 cut(s)	947, 1618, 2093
RseI	CAYNNNNRTG	1 cut(s)	1454
SalI	GTCGAC	1 cut(s)	2349
SatI	GCNGC	7 cut(s)	421, 424, 1649, 1979, 2307, 2340, 2486
Sau96I	GGNCC	3 cut(s)	120, 2327, 2459
ScaI	AGTACT	1 cut(s)	948
SchI	GAGTC	5 cut(s)	1247, 1821, 1874, 2189, 2466
ScrFI	CCNGG	3 cut(s)	22, 1902, 2464
SduI	GDGCHC	4 cut(s)	1175, 1614, 1719, 2549
SfaNI	GCATC	7 cut(s)	488, 575, 1004, 1098, 1148, 1615, 2328
SfcI	CTRYAG	1 cut(s)	2189
Sfr274I	CTCGAG	1 cut(s)	1374
SlaI	CTCGAG	1 cut(s)	1374
SmiMI	CAYNNNNRTG	1 cut(s)	1454
SmlI	CTYRAG	4 cut(s)	436, 1094, 1374, 1601
SmoI	CTYRAG	4 cut(s)	436, 1094, 1374, 1601
SpeI	ACTAGT	1 cut(s)	149
SsiI	CCGC	6 cut(s)	421, 740, 1235, 1968, 2107, 2124
SspI	AATATT	1 cut(s)	1994
SspMI	CTAG	8 cut(s)	150, 533, 1185, 1586, 1766, 1854, 1982, 2159
StyD4I	CCNGG	3 cut(s)	20, 1900, 2462
StyI	CCWWGG	3 cut(s)	911, 2130, 2416
TaaI	ACNGT	4 cut(s)	308, 803, 1063, 1698
TaiI	ACGT	4 cut(s)	610, 787, 1078, 1114
TaqI	TCGA	7 cut(s)	72, 854, 886, 1375, 2178, 2263, 2350
TatI	WGTACW	1 cut(s)	946
TauI	GCSGC	1 cut(s)	423
TfiI	GAWTC	6 cut(s)	397, 491, 722, 1484, 1523, 2221
TscAI	CASTG	6 cut(s)	349, 658, 751, 972, 1066, 1456
TseFI	GTSAC	2 cut(s)	364, 641
TseI	GCWGC	6 cut(s)	423, 1648, 1978, 2306, 2339, 2485
Tsp45I	GTSAC	2 cut(s)	364, 641
TspGWI	ACGGA	1 cut(s)	913
TspRI	CASTG	6 cut(s)	349, 658, 751, 972, 1066, 1456
Vha464I	CTTAAG	1 cut(s)	1094
XagI	CCTNNNNNAGG	1 cut(s)	1216
XapI	RAATTY	5 cut(s)	574, 832, 1362, 1590, 2196
XceI	RCATGY	3 cut(s)	19, 2262, 2319
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1839
XhoI	CTCGAG	1 cut(s)	1374
XmiI	GTMKAC	2 cut(s)	1566, 2350
XmnI	GAANNNNTTC	3 cut(s)	802, 1658, 2220
XspI	CTAG	8 cut(s)	150, 533, 1185, 1586, 1766, 1854, 1982, 2159
ZrmI	AGTACT	1 cut(s)	948
Zsp2I	ATGCAT	2 cut(s)	997, 2321

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.