Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0002964

Physical Location & Seq

Genomic Coordinates Reverse (-)

28867591 .. 28877004

Gene Structure 9414 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG160300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2106 bp

ATGCTAAAGGGAAGAGAAAGCTTGAGCCGATTGGTGGGCAAACGCAGGCGCTTCCTTCCCAATCGTCATTCACTCCTCTCTGCCCCTACCACCACCCAGAGCTTATTGAATCTGGATATCGATCCAAATGGCAAACTCGTGTCCCTGGAAGGCTCTTCAAATCAAGACGAACAAGAAAACACTGTGGTGGGCTTTGTTCCTTGCCCTGTTTGCAGCGTCAAACTCAGTGCCCAAAACAACACCATCAATTCTCATCTGGATGAGTGTCTATCTAGAGGAACCAAACGAAAGCTAACCCAGCGCACACTTCTAGAGCTGAACTTCTGCCCAGTGTCGAAAATTCAAAATTTTTCCTGTGACTCTAAAGAGTTTGGAAATGATTTATTTCCTGCAGCTCATGATGAGAGTCATGCACAAGATGCTTCGTGGGGGTTGTCTAACATAAGGGCTGTTGACGAAAGTCAAAATCAGGTTGACAGTCCATCCAGAAACCCAATCAATAAGGACGAGATCAGTGAGGTGCCAGATTTTGATGTGACCATCACTCGGGACGACATATATGGGGTGATTCTTGAAACTTTTATTGTTGGCCGCAGGTTTGGTGATGAAACTGATTTATATCTTGGTGCAAGCATTCATCTCTCAAGAGATCCTGATAATGTCAAGGATCCCAACGCTATCAAGGTTGTTTATTCAGATTCAGGATGCCTTAAAATGCTTGGTTTTCTCCCTCGCAAGCTAGCTGAGTATTTGTCTCCTCTGATAGACCAGTATTGTCTAAATTTTGAGGGATGCATTACCTCTGTTCCCAAGCATTCTTTTGATGTTGTCCCAATACAGATAGTGTGTCACAAGACCAGTGATGATAGGGACTTTAATGATGACAAGGTTTTCAAATGTTTATGGAGAAATGCTCAGCAAGTAATTGAATCTACAAAGTCCTGTCCGCCCAGTGCAATAAAATATCAGGATAACTTTTGTGTTTTCATACGTGAGGTTTTGAGAAACAGTTCTCACCTCTTGACAGATGATGAAAAGAATTTCATCGAGTCGTTTACTTCAATGTCAGATGATAGTCAGAGGCTATTTGTTCGGCTTTATACACGGAAAGGCCCATGGTTTCGGCTGTCTGCTATTTCATACCCAGAAGTACTGGATCCCCAACAAGCAGTGAAAGAGCTATCTGAGACAGGGTATGCTTCTTGCTTTGAAATTACAAATAAACTATCTGATGATGATATTGAGGAGATTTTGGATTTGCTCACTGTATCTGAGCTACGTGAAATCTTGTGCATCCTTAAGCAGAGTTGCAATCGTGGCCTAAGAAAGCTGGATCTCATTGCATCTCTTATATCTTCTTACAATGAAGATCTGTGCCCATTACTACCTAGTATGGTTTTGCATAGAACAGGATCCTGTGTTAGGATATCTTCAAATGCGGAGTCCCTTATCTGGCGTGCTGAGAGGCTTTTCTTCCTGAATGGTGAACAGGATCTCTCGGCATTTCTACTGGTGGATTTGGGAATAATCAAGTATCCAACTTACAAGTGCATAGTCTCACAACAAATTTTCTCAGCTCGAGATGACTTGCTTGGCTATGAAGAGGCTATTGAAGTGGCACAAATAGTTGATGAAGCTCTTGATGGAAGCAACACTGGATTGGTCTTAAAGTGCATAAAAATAGCTGATTCCCATTTATCAAATCCAGTTCAATCCTTGACCTCTGAATCAATGGCTCCATTCCTTTCCCACTTTTCAGCAACATTTGTCTACTCAAAAGTGGTTTTACTAGGAATTTCTTTTCTTGAGCGTGAGCGTAGGTACAATGAAGCTATCTATTTACTGAAAAGGCTGCTGAATTGTTTTGCTCGTGACGGTAGAAGAGGATACTGGACACTAAGGTTATCAATTGATTTGGAGCACATGTGCTATCTGAATGAGAGCCTTTTGGTTGCTGAAAATGGGTTACTAGATGAATGGGTGCGTGCTGGTTCAAGAGTGGCACTTCAAAGGAGAGTCCTTCGCTTGGGAAAACCACCGAGGCGATGGAAAACTCCTAGTTTTGCAGAGTCTGTCAAGAGGAAGATCATGGAGGTAATTGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000280 GO:0003674 GO:0003676 GO:0003677 GO:0003824 GO:0004518 GO:0004519 GO:0004520 GO:0004527 GO:0004536 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006281 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007049 GO:0007059 GO:0007127 GO:0007129 GO:0008150 GO:0008152 GO:0008409 GO:0009987 GO:0016043 GO:0016787 GO:0016788 GO:0016888 GO:0016893 GO:0017108 GO:0022402 GO:0022414 GO:0033554 GO:0034641 GO:0036297 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0045132 GO:0045143 GO:0046483 GO:0048256 GO:0048285 GO:0050896 GO:0051276 GO:0051321 GO:0051716 GO:0061982 GO:0070192 GO:0070336 GO:0071704 GO:0071840 GO:0090304 GO:0090305 GO:0097159 GO:0098813 GO:0140013 GO:0140097 GO:1901360 GO:1901363 GO:1903046

KEGG Pathways

Metabolic & Signaling

ko03460 map03460

Pfam Domains

Protein Families

HIRAN VRR_NUC

Protein Analysis

701

Amino Acids

79.44

Weight (kDa)

5.65

Isoelectric Point (pI)

44.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HIRAN	PF08797	191 - 271	4.6e-13	HIRAN domain
FAN1_HTH	PF21315	322 - 400	6.9e-18	FAN1, HTH domain
FAN1_TPR	PF21170	529 - 676	1e-13	Fanconi-associated nuclease 1, TPR domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002964)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G48360 AT1G48360 AT1G48360 AT1G48360 AT1G48360 AT1G48360
fragaria_vesca	FvH4_4g12370 FvH4_4g12370 FvH4_4g12370 FvH4_4g12370 FvH4_4g12370 FvH4_4g12370 FvH4_4g12370 FvH4_4g12370
malus_domestica	MD00G1163900.v1.1 MD09G1250200.v1.1 MD09G1250400.v1.1
prunus_persica	Prupe.1G176700_v2.0.a1 Prupe.1G176700_v2.0.a1 Prupe.1G176700_v2.0.a1 Prupe.1G176700_v2.0.a1 Prupe.1G176700_v2.0.a1
pyrus_communis	pycom04g02280 pycom13g29380
rosa_chinensis	RchiOBHm_Chr4g0410481
rosa_laevigata	RLG00000008424
rosa_multiflora	Rmu_sc0001969.1_g000008 Rmu_sc0016181.1_g000004
rosa_roxburghii	Rroxscaffold_5G00355290
rosa_rugosa	Rorug04G0114400
rosa_samantha	Rh4AG160900 Rh4BG160300 Rh4CG173100 Rh4DG156400
rosa_wichuraiana	Rw0G014390 Rw0G014400 Rw4G013420 Rw4G037760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	585
AccB1I	GGYRCC	1 cut(s)	520
AccI	GTMKAC	1 cut(s)	1770
AciI	CCGC	3 cut(s)	592, 947, 1439
AcoI	YGGCCR	1 cut(s)	589
AcsI	RAATTY	6 cut(s)	339, 346, 781, 1039, 1566, 1794
AfaI	GTAC	2 cut(s)	1152, 1823
AfiI	CCNNNNNNNGG	5 cut(s)	34, 546, 1422, 1452, 2026
AflII	CTTAAG	1 cut(s)	1298
AflIII	ACRYGT	1 cut(s)	1923
AjnI	CCWGG	1 cut(s)	144
AleI	CACNNNNGTG	1 cut(s)	185
Alw21I	GWGCWC	1 cut(s)	1923
Alw26I	GTCTC	3 cut(s)	759, 1181, 1561
AlwNI	CAGNNNCTG	1 cut(s)	2072
Ama87I	CYCGRG	2 cut(s)	546, 1578
AoxI	GGCC	3 cut(s)	589, 1111, 1318
ApeKI	GCWGC	3 cut(s)	213, 392, 1852
ApoI	RAATTY	6 cut(s)	339, 346, 781, 1039, 1566, 1794
ArsI	GACNNNNNNTTYG	2 cut(s)	1427, 1459
Asp700I	GAANNNNTTC	1 cut(s)	1009
AspLEI	GCGC	2 cut(s)	51, 303
AspS9I	GGNCC	1 cut(s)	1112
AsuHPI	GGTGA	4 cut(s)	577, 614, 1007, 1496
AsuNHI	GCTAGC	1 cut(s)	739
AvaI	CYCGRG	2 cut(s)	546, 1578
BaeGI	GKGCMC	2 cut(s)	232, 1379
BamHI	GGATCC	3 cut(s)	667, 1156, 1412
BanI	GGYRCC	1 cut(s)	520
BauI	CACGAG	2 cut(s)	137, 1869
Bbv12I	GWGCWC	1 cut(s)	1923
BbvI	GCAGC	3 cut(s)	225, 404, 1839
BccI	CCATC	5 cut(s)	251, 490, 548, 1637, 2040
BciT130I	CCWGG	1 cut(s)	146
BciVI	GTATCC	2 cut(s)	1545, 1880
BcoDI	GTCTC	3 cut(s)	759, 1181, 1561
BfaI	CTAG	7 cut(s)	273, 311, 740, 1389, 1790, 1970, 2058
BfmI	CTRYAG	1 cut(s)	390
BfoI	RGCGCY	1 cut(s)	52
BfrI	CTTAAG	1 cut(s)	1298
BfuAI	ACCTGC	1 cut(s)	585
BfuI	GTATCC	2 cut(s)	1545, 1880
BglII	AGATCT	1 cut(s)	1369
BisI	GCNGC	4 cut(s)	214, 393, 592, 1853
BlpI	GCTNAGC	1 cut(s)	915
BlsI	GCNGC	4 cut(s)	215, 394, 593, 1854
BmcAI	AGTACT	1 cut(s)	1152
Bme1390I	CCNGG	1 cut(s)	146
BmeT110I	CYCGRG	2 cut(s)	546, 1578
BmgT120I	GGNCC	1 cut(s)	1112
BmiI	GGNNCC	6 cut(s)	280, 522, 669, 1158, 1414, 1737
BmrFI	CCNGG	1 cut(s)	146
BmrI	ACTGGG	2 cut(s)	323, 945
BmsI	GCATC	5 cut(s)	409, 695, 782, 1302, 1352
BmtI	GCTAGC	1 cut(s)	743
BmuI	ACTGGG	2 cut(s)	323, 945
BoxI	GACNNNNGTC	1 cut(s)	459
BplI	GAGNNNNNCTC	2 cut(s)	898, 930
Bpu1102I	GCTNAGC	1 cut(s)	915
BpuEI	CTTGAG	3 cut(s)	43, 628, 1826
Bsa29I	ATCGAT	1 cut(s)	120
BsaAI	YACGTR	2 cut(s)	992, 1280
BsaBI	GATNNNNATC	2 cut(s)	120, 618
BsaJI	CCNNGG	3 cut(s)	144, 1115, 2039
BsaXI	ACNNNNNCTCC	2 cut(s)	1910, 1940
Bsc4I	CCNNNNNNNGG	5 cut(s)	34, 546, 1422, 1452, 2026
Bse1I	ACTGG	9 cut(s)	329, 769, 858, 951, 1158, 1515, 1660, 1706, 1895
Bse3DI	GCAATG	1 cut(s)	1338
Bse8I	GATNNNNATC	2 cut(s)	120, 618
BseBI	CCWGG	1 cut(s)	146
BseCI	ATCGAT	1 cut(s)	120
BseDI	CCNNGG	3 cut(s)	144, 1115, 2039
BseGI	GGATG	5 cut(s)	265, 482, 710, 797, 1293
BseJI	GATNNNNATC	2 cut(s)	120, 618
BseLI	CCNNNNNNNGG	5 cut(s)	34, 546, 1422, 1452, 2026
BseMI	GCAATG	1 cut(s)	1338
BseMII	CTCAG	7 cut(s)	238, 735, 929, 1176, 1263, 1452, 1587
BseNI	ACTGG	9 cut(s)	329, 769, 858, 951, 1158, 1515, 1660, 1706, 1895
BseRI	GAGGAG	3 cut(s)	65, 747, 1259
BseSI	GKGCMC	2 cut(s)	232, 1379
BseXI	GCAGC	3 cut(s)	225, 404, 1839
BseYI	CCCAGC	1 cut(s)	297
BshFI	GGCC	3 cut(s)	591, 1113, 1320
BshNI	GGYRCC	1 cut(s)	520
BshVI	ATCGAT	1 cut(s)	120
BsiHKAI	GWGCWC	1 cut(s)	1923
BsiHKCI	CYCGRG	2 cut(s)	546, 1578
BslFI	GGGAC	5 cut(s)	127, 563, 815, 884, 1429
BslI	CCNNNNNNNGG	5 cut(s)	34, 546, 1422, 1452, 2026
BsmAI	GTCTC	3 cut(s)	759, 1181, 1561
BsmFI	GGGAC	5 cut(s)	127, 563, 815, 884, 1429
BsmI	GAATGC	2 cut(s)	633, 814
BsnI	GGCC	3 cut(s)	591, 1113, 1320
BsoBI	CYCGRG	2 cut(s)	546, 1578
Bsp1286I	GDGCHC	3 cut(s)	232, 1379, 1923
Bsp1720I	GCTNAGC	1 cut(s)	915
Bsp19I	CCATGG	1 cut(s)	1115
BspACI	CCGC	3 cut(s)	592, 947, 1439
BspANI	GGCC	3 cut(s)	591, 1113, 1320
BspCNI	CTCAG	7 cut(s)	237, 736, 928, 1177, 1264, 1453, 1586
BspDI	ATCGAT	1 cut(s)	120
BspHI	TCATGA	1 cut(s)	397
BspLI	GGNNCC	6 cut(s)	280, 522, 669, 1158, 1414, 1737
BspMAI	CTGCAG	1 cut(s)	394
BspMI	ACCTGC	1 cut(s)	585
BspOI	GCTAGC	1 cut(s)	743
BspQI	GCTCTTC	1 cut(s)	160
BspT107I	GGYRCC	1 cut(s)	520
BspTI	CTTAAG	1 cut(s)	1298
BsrDI	GCAATG	1 cut(s)	1338
BsrI	ACTGG	9 cut(s)	329, 769, 858, 951, 1158, 1515, 1660, 1706, 1895
BssECI	CCNNGG	3 cut(s)	144, 1115, 2039
BssSI	CACGAG	2 cut(s)	137, 1869
BssT1I	CCWWGG	1 cut(s)	1115
Bst2BI	CACGAG	2 cut(s)	137, 1869
Bst2UI	CCWGG	1 cut(s)	146
Bst4CI	ACNGT	5 cut(s)	184, 479, 1010, 1267, 1877
Bst6I	CTCTTC	4 cut(s)	7, 160, 1596, 1876
BstAFI	CTTAAG	1 cut(s)	1298
BstAPI	GCANNNNNTGC	1 cut(s)	419
BstBAI	YACGTR	2 cut(s)	992, 1280
BstC8I	GCNNGC	6 cut(s)	47, 631, 737, 741, 1458, 1986
BstDEI	CTNAG	9 cut(s)	224, 744, 915, 1185, 1272, 1322, 1461, 1573, 1898
BstDSI	CCRYGG	1 cut(s)	1115
BstENI	CCTNNNNNAGG	1 cut(s)	1420
BstF5I	GGATG	5 cut(s)	265, 482, 710, 797, 1293
BstH2I	RGCGCY	1 cut(s)	52
BstHHI	GCGC	2 cut(s)	51, 303
BstMAI	GTCTC	3 cut(s)	759, 1181, 1561
BstMWI	GCNNNNNNNGC	4 cut(s)	210, 298, 419, 1317
BstNI	CCWGG	1 cut(s)	146
BstNSI	RCATGY	1 cut(s)	1927
BstPAI	GACNNNNGTC	1 cut(s)	459
BstSCI	CCNGG	1 cut(s)	144
BstSFI	CTRYAG	1 cut(s)	390
BstSLI	GKGCMC	2 cut(s)	232, 1379
BstV1I	GCAGC	3 cut(s)	225, 404, 1839
BstX2I	RGATCY	7 cut(s)	649, 667, 1156, 1333, 1369, 1412, 1492
BstYI	RGATCY	7 cut(s)	649, 667, 1156, 1333, 1369, 1412, 1492
Bsu15I	ATCGAT	1 cut(s)	120
BsuI	GTATCC	2 cut(s)	1545, 1880
BsuRI	GGCC	3 cut(s)	591, 1113, 1320
BsuTUI	ATCGAT	1 cut(s)	120
BtgI	CCRYGG	1 cut(s)	1115
BtgZI	GCGATG	1 cut(s)	2059
BtsCI	GGATG	5 cut(s)	265, 482, 710, 797, 1293
BtsI	GCAGTG	1 cut(s)	1176
BtsIMutI	CAGTG	9 cut(s)	180, 232, 336, 520, 865, 958, 1176, 1263, 1653
BveI	ACCTGC	1 cut(s)	585
Cac8I	GCNNGC	6 cut(s)	47, 631, 737, 741, 1458, 1986
CaiI	CAGNNNCTG	1 cut(s)	2072
CciI	TCATGA	1 cut(s)	397
CfoI	GCGC	2 cut(s)	51, 303
Cfr13I	GGNCC	1 cut(s)	1112
ClaI	ATCGAT	1 cut(s)	120
CseI	GACGC	1 cut(s)	205
Csp6I	GTAC	2 cut(s)	1151, 1822
CviAII	CATG	5 cut(s)	398, 410, 1116, 1924, 2089
CviQI	GTAC	2 cut(s)	1151, 1822
DdeI	CTNAG	9 cut(s)	224, 744, 915, 1185, 1272, 1322, 1461, 1573, 1898
EaeI	YGGCCR	1 cut(s)	589
Eam1104I	CTCTTC	4 cut(s)	7, 160, 1596, 1876
EarI	CTCTTC	4 cut(s)	7, 160, 1596, 1876
EciI	GGCGGA	1 cut(s)	936
Eco130I	CCWWGG	1 cut(s)	1115
Eco32I	GATATC	2 cut(s)	118, 1428
Eco88I	CYCGRG	2 cut(s)	546, 1578
EcoNI	CCTNNNNNAGG	1 cut(s)	1420
EcoRII	CCWGG	1 cut(s)	144
EcoRV	GATATC	2 cut(s)	118, 1428
EcoT14I	CCWWGG	1 cut(s)	1115
EcoT22I	ATGCAT	1 cut(s)	797
ErhI	CCWWGG	1 cut(s)	1115
FaeI	CATG	5 cut(s)	401, 413, 1119, 1927, 2092
FaqI	GGGAC	5 cut(s)	127, 563, 815, 884, 1429
FatI	CATG	5 cut(s)	397, 409, 1115, 1923, 2088
FblI	GTMKAC	1 cut(s)	1770
Fnu4HI	GCNGC	4 cut(s)	214, 393, 592, 1853
FokI	GGATG	5 cut(s)	272, 469, 717, 804, 1280
Fsp4HI	GCNGC	4 cut(s)	214, 393, 592, 1853
FspBI	CTAG	7 cut(s)	273, 311, 740, 1389, 1790, 1970, 2058
GlaI	GCGC	2 cut(s)	50, 302
GluI	GCNGC	4 cut(s)	214, 393, 592, 1853
GsaI	CCCAGC	1 cut(s)	301
HaeII	RGCGCY	1 cut(s)	52
HaeIII	GGCC	3 cut(s)	591, 1113, 1320
HgaI	GACGC	1 cut(s)	205
HhaI	GCGC	2 cut(s)	51, 303
Hin1II	CATG	5 cut(s)	401, 413, 1119, 1927, 2092
Hin6I	GCGC	2 cut(s)	49, 301
HinP1I	GCGC	2 cut(s)	49, 301
HincII	GTYRAC	2 cut(s)	454, 475
HindII	GTYRAC	2 cut(s)	454, 475
HindIII	AAGCTT	1 cut(s)	19
HphI	GGTGA	4 cut(s)	577, 614, 1007, 1496
Hpy166II	GTNNAC	5 cut(s)	454, 475, 1056, 1487, 1771
Hpy188I	TCNGA	9 cut(s)	697, 762, 1069, 1080, 1186, 1231, 1273, 1726, 1935
Hpy8I	GTNNAC	5 cut(s)	454, 475, 1056, 1487, 1771
HpyAV	CCTTC	3 cut(s)	65, 143, 2030
HpyCH4III	ACNGT	5 cut(s)	184, 479, 1010, 1267, 1877
HpyCH4IV	ACGT	2 cut(s)	991, 1279
HpyF10VI	GCNNNNNNNGC	4 cut(s)	210, 298, 419, 1317
HpyF3I	CTNAG	9 cut(s)	224, 744, 915, 1185, 1272, 1322, 1461, 1573, 1898
HpySE526I	ACGT	2 cut(s)	991, 1279
Hsp92II	CATG	5 cut(s)	401, 413, 1119, 1927, 2092
HspAI	GCGC	2 cut(s)	49, 301
LguI	GCTCTTC	1 cut(s)	160
LmnI	GCTCC	2 cut(s)	1741, 1918
Lsp1109I	GCAGC	3 cut(s)	225, 404, 1839
LweI	GCATC	5 cut(s)	409, 695, 782, 1302, 1352
MaeI	CTAG	7 cut(s)	273, 311, 740, 1389, 1790, 1970, 2058
MaeII	ACGT	2 cut(s)	991, 1279
MaeIII	GTNAC	5 cut(s)	356, 535, 848, 1871, 1965
MboII	GAAGA	9 cut(s)	24, 147, 1347, 1379, 1422, 1465, 1613, 1893, 2095
MfeI	CAATTG	1 cut(s)	1908
MflI	RGATCY	7 cut(s)	649, 667, 1156, 1333, 1369, 1412, 1492
MhlI	GDGCHC	3 cut(s)	232, 1379, 1923
MlyI	GAGTC	6 cut(s)	353, 415, 1058, 1451, 2025, 2078
MmeI	TCCRAC	1 cut(s)	1562
Mph1103I	ATGCAT	1 cut(s)	797
MroXI	GAANNNNTTC	1 cut(s)	1009
MseI	TTAA	5 cut(s)	711, 876, 1299, 1667, 2104
MslI	CAYNNNNRTG	2 cut(s)	185, 258
MspCI	CTTAAG	1 cut(s)	1298
MspR9I	CCNGG	1 cut(s)	146
MunI	CAATTG	1 cut(s)	1908
Mva1269I	GAATGC	2 cut(s)	633, 814
MvaI	CCWGG	1 cut(s)	146
MwoI	GCNNNNNNNGC	4 cut(s)	210, 298, 419, 1317
NcoI	CCATGG	1 cut(s)	1115
NheI	GCTAGC	1 cut(s)	739
NlaIII	CATG	5 cut(s)	401, 413, 1119, 1927, 2092
NlaIV	GGNNCC	6 cut(s)	280, 522, 669, 1158, 1414, 1737
NmeAIII	GCCGAG	1 cut(s)	1478
NmuCI	GTSAC	4 cut(s)	356, 535, 848, 1871
NsiI	ATGCAT	1 cut(s)	797
NspI	RCATGY	1 cut(s)	1927
OliI	CACNNNNGTG	1 cut(s)	185
PaeR7I	CTCGAG	1 cut(s)	1578
PagI	TCATGA	1 cut(s)	397
PciI	ACATGT	1 cut(s)	1923
PciSI	GCTCTTC	1 cut(s)	160
PctI	GAATGC	2 cut(s)	633, 814
PdmI	GAANNNNTTC	1 cut(s)	1009
PfeI	GAWTC	6 cut(s)	109, 568, 698, 929, 1688, 1727
PkrI	GCNGC	4 cut(s)	215, 394, 593, 1854
PleI	GAGTC	6 cut(s)	353, 414, 1057, 1450, 2024, 2077
PpsI	GAGTC	6 cut(s)	353, 414, 1057, 1450, 2024, 2077
Ppu21I	YACGTR	2 cut(s)	992, 1280
PscI	ACATGT	1 cut(s)	1923
PshAI	GACNNNNGTC	1 cut(s)	459
Psp6I	CCWGG	1 cut(s)	144
PspFI	CCCAGC	1 cut(s)	297
PspGI	CCWGG	1 cut(s)	144
PspN4I	GGNNCC	6 cut(s)	280, 522, 669, 1158, 1414, 1737
PspPI	GGNCC	1 cut(s)	1112
PstI	CTGCAG	1 cut(s)	394
PstNI	CAGNNNCTG	1 cut(s)	2072
PsuI	RGATCY	7 cut(s)	649, 667, 1156, 1333, 1369, 1412, 1492
RsaI	GTAC	2 cut(s)	1152, 1823
RsaNI	GTAC	2 cut(s)	1151, 1822
RseI	CAYNNNNRTG	2 cut(s)	185, 258
SapI	GCTCTTC	1 cut(s)	160
SaqAI	TTAA	5 cut(s)	711, 876, 1299, 1667, 2104
SatI	GCNGC	4 cut(s)	214, 393, 592, 1853
Sau96I	GGNCC	1 cut(s)	1112
ScaI	AGTACT	1 cut(s)	1152
SchI	GAGTC	6 cut(s)	353, 415, 1058, 1451, 2025, 2078
ScrFI	CCNGG	1 cut(s)	146
SduI	GDGCHC	3 cut(s)	232, 1379, 1923
SfaNI	GCATC	5 cut(s)	409, 695, 782, 1302, 1352
SfcI	CTRYAG	1 cut(s)	390
Sfr274I	CTCGAG	1 cut(s)	1578
SlaI	CTCGAG	1 cut(s)	1578
SmiMI	CAYNNNNRTG	2 cut(s)	185, 258
SmlI	CTYRAG	5 cut(s)	22, 643, 1298, 1578, 1805
SmoI	CTYRAG	5 cut(s)	22, 643, 1298, 1578, 1805
SsiI	CCGC	3 cut(s)	592, 947, 1439
SspMI	CTAG	7 cut(s)	273, 311, 740, 1389, 1790, 1970, 2058
StyD4I	CCNGG	1 cut(s)	144
StyI	CCWWGG	1 cut(s)	1115
TaaI	ACNGT	5 cut(s)	184, 479, 1010, 1267, 1877
TaiI	ACGT	2 cut(s)	994, 1282
TaqI	TCGA	4 cut(s)	120, 335, 1047, 1579
TatI	WGTACW	1 cut(s)	1150
TauI	GCSGC	1 cut(s)	594
TfiI	GAWTC	6 cut(s)	109, 568, 698, 929, 1688, 1727
Tru1I	TTAA	5 cut(s)	711, 876, 1299, 1667, 2104
Tru9I	TTAA	5 cut(s)	711, 876, 1299, 1667, 2104
TscAI	CASTG	9 cut(s)	187, 232, 336, 520, 865, 958, 1176, 1270, 1660
TseFI	GTSAC	4 cut(s)	356, 535, 848, 1871
TseI	GCWGC	3 cut(s)	213, 392, 1852
Tsp45I	GTSAC	4 cut(s)	356, 535, 848, 1871
TspGWI	ACGGA	1 cut(s)	1120
TspRI	CASTG	9 cut(s)	187, 232, 336, 520, 865, 958, 1176, 1270, 1660
Vha464I	CTTAAG	1 cut(s)	1298
XagI	CCTNNNNNAGG	1 cut(s)	1420
XapI	RAATTY	6 cut(s)	339, 346, 781, 1039, 1566, 1794
XbaI	TCTAGA	2 cut(s)	272, 310
XceI	RCATGY	1 cut(s)	1927
XcmI	CCANNNNNNNNNTGG	1 cut(s)	2043
XhoI	CTCGAG	1 cut(s)	1578
XmiI	GTMKAC	1 cut(s)	1770
XmnI	GAANNNNTTC	1 cut(s)	1009
XspI	CTAG	7 cut(s)	273, 311, 740, 1389, 1790, 1970, 2058
ZrmI	AGTACT	1 cut(s)	1152
Zsp2I	ATGCAT	1 cut(s)	797

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.