Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0002964

Physical Location & Seq

Genomic Coordinates Reverse (-)

37881122 .. 37890056

Gene Structure 8935 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG173100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2103 bp

ATGCTAAAGGGAAGAGAAAGCTTGAGCCGATTGGTGGGCAAACGCAGGCGCTTCCTTCCCAATCGTCATTCACTCCTTTCTGCCCCTACCACCACCCAGAGCTTATTGAATCTGGATATCGATCCAAATGGCAGACTCGTGTCCCCGGAAGGCTCTTCAAATCAAGACGAACAAGAAAACACACTGGTGGGCTCTGTTGCTTGCCCTGTTTGCAGCCTCAAACTCAGCGCCCAAAACAACACCATCAATTCTCATCTGGATGAGTGTCTATCTAGAGGAACCAAACGAAAGCTAACCCAGCGCACACTTCTAGAGCTCAACTTCTGCCCAGTGTCGAAATTTCAAAATTTTTCCTGTGACTCTAAACAGTTTGGAAATGATTTATTTCCTGCAGCTCAGGATGAAAGTCAAAATCAGGTTGACAGTCCATCCAGAGACCCAATCAATAAGGACGAGATCAGTGAGGTGCCAGATTTTGATGTGACCATCACTCAGGACGACATGTATGGGGTGATTCTTGAAACTTTTATTGTTGGCCGCAGGTTTGGTGATGAAACTGAGTTATATCTTGGTGCAAGCATTTATCTCTCAAGAGATCCTGATAATGTTAAGGATCCTAATGCTATCAAGGTTGTTTATTCAGATTCGGGATGCCTTAAAATGCTTGGCTTTCTCCCTCGCAAGCTAGCTGAGTATTTGTCTCCTCTGATAGACCAGTATAGTCTAAATTTTGAGGGATGCGTTACCTCTGTTCCCAAGCGTTCTATTGATGTTGTCCCAATACAGATAGTGTGTCACAAGACCAGTGATAATAAGGACTTTAATGATGACAAGGTTTTCAAATGTTTATGGAGAAATGCTCAGCAAGTAATTGAATCTACAAAGTCCTGTCCGCCCAGTGCAATAAAATATCAGGATAACTTTTGTGTTTTCATACGTGAGGTTTTGAGAAACAGTTCTCACCTCTTGACAGATGATGAAAAGAATTTCATCGAGTCATTTACTTCGATGTCAGATGATAGTCAGAGGCTATTTGTTCGGCTTTATACACGGAAAGGCCCATGGTTTCGGCTGTCTGCTATTTCATACCCAGAAGTACTGGATCCCCAACAAGCAGTGAAAGAGCTATCTGAGACAGGGTATGCATCTTGCTTTGAAATTACAAATAAACTATCTGATGATTGTATTAAGGAGATTTTGGATTTGCTCACTGTATCTGAGCTACGTGAAATCTTGTGCATCCTTAAGCAGAGTTGCAATCGTGGCCTAAGAAAGCAGGATCTCATTGCATCTCTTATATCTTCTTACGATGAAGATTTGTGCCCATTACTACCTAGTATGGTTTTGCACAGAACAGGATCCTGTGTTAGGATATCTTCAAATGCGGAGTCCCTTATCTGGCGTGCTGAGAGGCTTTTCTTCCTGAATGGTGAACAGGATCTCTCGGCATTTCTACTGGTGGATTTGGGAATAGTCAAGTATCCAACTTACAAGTGCATAGTCTCACAACAAATTTTCTCTGCTCGAGATGATTTGCTTGGCTATGAAGAGGCTATTGAAGTGGCACAAATAGTTGATGAATCTCTTGATGGAAGCAACACTGGATTGGTCTTAAAGTGCATAAAGATAGCTGATTCCCATTTATCCAATCCGGTTCAATCCTTGACCTCTGAATCAATGGCTCCATTCCTTTCCCACTTTTCAGCTACATTTGTCTACTCAAAAGTGGTTTTACTAGGAATTTCTTTTCTTGAGCGTGAGCATAGGTACAATGATGCTATCTATTTACTGAAAAGGCTGCTGAATTGTTTCGCTCGTGATGGTAGAAGAGGATACTGGACACTACGGTTATCAATTGATTTGGAGCACATGGGCTATCTGAATGAGAGCCTTTTGGTTGCTGAAAATGGGTTACTAGATGAATGGGTGCGTGCTGGTTCAAGAGTGGCACTTCAAAGGAGAGTCCTTCGCTTGGGAAAACCACCGAGGCGATGGAAAACTCCTAGTTTTGCAGAGTCTGTCAAGAGGAAGATCACGGAGGTAATTGTTTCATCTCTCTATAACTGTAAAGTTAAGTGTAACCTATGTTTCCTAATTTCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000280 GO:0003674 GO:0003676 GO:0003677 GO:0003824 GO:0004518 GO:0004519 GO:0004520 GO:0004527 GO:0004536 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006281 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007049 GO:0007059 GO:0007127 GO:0007129 GO:0008150 GO:0008152 GO:0008409 GO:0009987 GO:0016043 GO:0016787 GO:0016788 GO:0016888 GO:0016893 GO:0017108 GO:0022402 GO:0022414 GO:0033554 GO:0034641 GO:0036297 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0045132 GO:0045143 GO:0046483 GO:0048256 GO:0048285 GO:0050896 GO:0051276 GO:0051321 GO:0051716 GO:0061982 GO:0070192 GO:0070336 GO:0071704 GO:0071840 GO:0090304 GO:0090305 GO:0097159 GO:0098813 GO:0140013 GO:0140097 GO:1901360 GO:1901363 GO:1903046

KEGG Pathways

Metabolic & Signaling

ko03460 map03460

Pfam Domains

Protein Families

HIRAN VRR_NUC

Protein Analysis

700

Amino Acids

79.25

Weight (kDa)

6.0

Isoelectric Point (pI)

46.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HIRAN	PF08797	173 - 254	4e-14	HIRAN domain
FAN1_HTH	PF21315	304 - 382	6.9e-18	FAN1, HTH domain
FAN1_TPR	PF21170	511 - 658	3.6e-13	Fanconi-associated nuclease 1, TPR domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002964)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G48360 AT1G48360 AT1G48360 AT1G48360 AT1G48360 AT1G48360
fragaria_vesca	FvH4_4g12370 FvH4_4g12370 FvH4_4g12370 FvH4_4g12370 FvH4_4g12370 FvH4_4g12370 FvH4_4g12370 FvH4_4g12370
malus_domestica	MD00G1163900.v1.1 MD09G1250200.v1.1 MD09G1250400.v1.1
prunus_persica	Prupe.1G176700_v2.0.a1 Prupe.1G176700_v2.0.a1 Prupe.1G176700_v2.0.a1 Prupe.1G176700_v2.0.a1 Prupe.1G176700_v2.0.a1
pyrus_communis	pycom04g02280 pycom13g29380
rosa_chinensis	RchiOBHm_Chr4g0410481
rosa_laevigata	RLG00000008424
rosa_multiflora	Rmu_sc0001969.1_g000008 Rmu_sc0016181.1_g000004
rosa_roxburghii	Rroxscaffold_5G00355290
rosa_rugosa	Rorug04G0114400
rosa_samantha	Rh4AG160900 Rh4BG160300 Rh4CG173100 Rh4DG156400
rosa_wichuraiana	Rw0G014390 Rw0G014400 Rw4G013420 Rw4G037760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	531
AccB1I	GGYRCC	1 cut(s)	466
AccI	GTMKAC	1 cut(s)	1716
AciI	CCGC	3 cut(s)	538, 893, 1385
AcoI	YGGCCR	1 cut(s)	535
AcsI	RAATTY	6 cut(s)	338, 346, 727, 985, 1512, 1740
AfaI	GTAC	2 cut(s)	1098, 1769
AfiI	CCNNNNNNNGG	4 cut(s)	34, 1368, 1398, 1972
AflII	CTTAAG	1 cut(s)	1244
AflIII	ACRYGT	1 cut(s)	501
AleI	CACNNNNGTG	1 cut(s)	185
Alw21I	GWGCWC	2 cut(s)	318, 1869
Alw26I	GTCTC	4 cut(s)	429, 705, 1127, 1507
AlwNI	CAGNNNCTG	1 cut(s)	2018
Ama87I	CYCGRG	1 cut(s)	1524
AoxI	GGCC	3 cut(s)	535, 1057, 1264
ApeKI	GCWGC	3 cut(s)	213, 392, 1798
ApoI	RAATTY	6 cut(s)	338, 346, 727, 985, 1512, 1740
ArsI	GACNNNNNNTTYG	2 cut(s)	1373, 1405
Asp700I	GAANNNNTTC	2 cut(s)	955, 1808
AspLEI	GCGC	3 cut(s)	51, 230, 303
AspS9I	GGNCC	1 cut(s)	1058
AsuC2I	CCSGG	1 cut(s)	146
AsuHPI	GGTGA	4 cut(s)	523, 560, 953, 1442
AsuNHI	GCTAGC	1 cut(s)	685
AvaI	CYCGRG	1 cut(s)	1524
BaeGI	GKGCMC	1 cut(s)	1325
BamHI	GGATCC	3 cut(s)	613, 1102, 1358
BanI	GGYRCC	1 cut(s)	466
BanII	GRGCYC	2 cut(s)	194, 318
BauI	CACGAG	2 cut(s)	137, 1815
Bbv12I	GWGCWC	2 cut(s)	318, 1869
BbvI	GCAGC	3 cut(s)	225, 404, 1785
BccI	CCATC	6 cut(s)	251, 436, 494, 1583, 1814, 1986
BciVI	GTATCC	2 cut(s)	1491, 1826
BcnI	CCSGG	1 cut(s)	146
BcoDI	GTCTC	4 cut(s)	429, 705, 1127, 1507
BfaI	CTAG	7 cut(s)	273, 311, 686, 1335, 1736, 1916, 2004
BfmI	CTRYAG	1 cut(s)	390
BfoI	RGCGCY	2 cut(s)	52, 231
BfrI	CTTAAG	1 cut(s)	1244
BfuAI	ACCTGC	1 cut(s)	531
BfuI	GTATCC	2 cut(s)	1491, 1826
BisI	GCNGC	4 cut(s)	214, 393, 538, 1799
BlpI	GCTNAGC	1 cut(s)	861
BlsI	GCNGC	4 cut(s)	215, 394, 539, 1800
BmcAI	AGTACT	1 cut(s)	1098
Bme1390I	CCNGG	1 cut(s)	146
BmeT110I	CYCGRG	1 cut(s)	1524
BmgT120I	GGNCC	1 cut(s)	1058
BmiI	GGNNCC	6 cut(s)	280, 468, 615, 1104, 1360, 1683
BmrFI	CCNGG	1 cut(s)	146
BmrI	ACTGGG	2 cut(s)	323, 891
BmsI	GCATC	6 cut(s)	641, 728, 1154, 1248, 1298, 1765
BmtI	GCTAGC	1 cut(s)	689
BmuI	ACTGGG	2 cut(s)	323, 891
BoxI	GACNNNNGTC	1 cut(s)	139
BplI	GAGNNNNNCTC	2 cut(s)	844, 876
Bpu10I	CCTNAGC	1 cut(s)	396
Bpu1102I	GCTNAGC	1 cut(s)	861
BpuEI	CTTGAG	3 cut(s)	43, 574, 1772
BpuMI	CCSGG	1 cut(s)	146
Bsa29I	ATCGAT	1 cut(s)	120
BsaAI	YACGTR	2 cut(s)	938, 1226
BsaBI	GATNNNNATC	1 cut(s)	120
BsaI	GGTCTC	1 cut(s)	429
BsaJI	CCNNGG	3 cut(s)	144, 1061, 1985
BsaWI	WCCGGW	1 cut(s)	1651
Bsc4I	CCNNNNNNNGG	4 cut(s)	34, 1368, 1398, 1972
Bse1I	ACTGG	9 cut(s)	189, 329, 715, 804, 897, 1104, 1461, 1606, 1841
Bse3DI	GCAATG	1 cut(s)	1284
Bse8I	GATNNNNATC	1 cut(s)	120
BseCI	ATCGAT	1 cut(s)	120
BseDI	CCNNGG	3 cut(s)	144, 1061, 1985
BseGI	GGATG	6 cut(s)	265, 406, 428, 656, 743, 1239
BseJI	GATNNNNATC	1 cut(s)	120
BseLI	CCNNNNNNNGG	4 cut(s)	34, 1368, 1398, 1972
BseMI	GCAATG	1 cut(s)	1284
BseMII	CTCAG	9 cut(s)	238, 410, 506, 549, 681, 875, 1122, 1209, 1398
BseNI	ACTGG	9 cut(s)	189, 329, 715, 804, 897, 1104, 1461, 1606, 1841
BseRI	GAGGAG	1 cut(s)	693
BseSI	GKGCMC	1 cut(s)	1325
BseXI	GCAGC	3 cut(s)	225, 404, 1785
BseYI	CCCAGC	1 cut(s)	297
BshFI	GGCC	3 cut(s)	537, 1059, 1266
BshNI	GGYRCC	1 cut(s)	466
BshVI	ATCGAT	1 cut(s)	120
BsiHKAI	GWGCWC	2 cut(s)	318, 1869
BsiHKCI	CYCGRG	1 cut(s)	1524
BsiSI	CCGG	2 cut(s)	146, 1652
BslFI	GGGAC	3 cut(s)	127, 761, 1375
BslI	CCNNNNNNNGG	4 cut(s)	34, 1368, 1398, 1972
BsmAI	GTCTC	4 cut(s)	429, 705, 1127, 1507
BsmFI	GGGAC	3 cut(s)	127, 761, 1375
BsnI	GGCC	3 cut(s)	537, 1059, 1266
Bso31I	GGTCTC	1 cut(s)	429
BsoBI	CYCGRG	1 cut(s)	1524
Bsp1286I	GDGCHC	4 cut(s)	194, 318, 1325, 1869
Bsp143I	GATC	9 cut(s)	121, 456, 595, 613, 1102, 1279, 1358, 1438, 2031
Bsp1720I	GCTNAGC	1 cut(s)	861
Bsp19I	CCATGG	1 cut(s)	1061
BspACI	CCGC	3 cut(s)	538, 893, 1385
BspANI	GGCC	3 cut(s)	537, 1059, 1266
BspCNI	CTCAG	9 cut(s)	237, 409, 505, 550, 682, 874, 1123, 1210, 1399
BspDI	ATCGAT	1 cut(s)	120
BspLI	GGNNCC	6 cut(s)	280, 468, 615, 1104, 1360, 1683
BspMAI	CTGCAG	1 cut(s)	394
BspMI	ACCTGC	1 cut(s)	531
BspOI	GCTAGC	1 cut(s)	689
BspQI	GCTCTTC	1 cut(s)	160
BspT107I	GGYRCC	1 cut(s)	466
BspTI	CTTAAG	1 cut(s)	1244
BspTNI	GGTCTC	1 cut(s)	429
BsrDI	GCAATG	1 cut(s)	1284
BsrI	ACTGG	9 cut(s)	189, 329, 715, 804, 897, 1104, 1461, 1606, 1841
BssECI	CCNNGG	3 cut(s)	144, 1061, 1985
BssMI	GATC	9 cut(s)	121, 456, 595, 613, 1102, 1279, 1358, 1438, 2031
BssSI	CACGAG	2 cut(s)	137, 1815
BssT1I	CCWWGG	1 cut(s)	1061
Bst2BI	CACGAG	2 cut(s)	137, 1815
Bst4CI	ACNGT	6 cut(s)	369, 425, 956, 1213, 1848, 2066
Bst6I	CTCTTC	4 cut(s)	7, 160, 1542, 1822
BstAFI	CTTAAG	1 cut(s)	1244
BstBAI	YACGTR	2 cut(s)	938, 1226
BstC8I	GCNNGC	7 cut(s)	47, 202, 577, 683, 687, 1404, 1932
BstDSI	CCRYGG	1 cut(s)	1061
BstENI	CCTNNNNNAGG	1 cut(s)	1366
BstF5I	GGATG	6 cut(s)	265, 406, 428, 656, 743, 1239
BstH2I	RGCGCY	2 cut(s)	52, 231
BstHHI	GCGC	3 cut(s)	51, 230, 303
BstKTI	GATC	9 cut(s)	124, 459, 598, 616, 1105, 1282, 1361, 1441, 2034
BstMAI	GTCTC	4 cut(s)	429, 705, 1127, 1507
BstMBI	GATC	9 cut(s)	121, 456, 595, 613, 1102, 1279, 1358, 1438, 2031
BstMWI	GCNNNNNNNGC	3 cut(s)	210, 298, 1263
BstNSI	RCATGY	1 cut(s)	505
BstPAI	GACNNNNGTC	1 cut(s)	139
BstSCI	CCNGG	1 cut(s)	144
BstSFI	CTRYAG	1 cut(s)	390
BstSLI	GKGCMC	1 cut(s)	1325
BstV1I	GCAGC	3 cut(s)	225, 404, 1785
BstX2I	RGATCY	6 cut(s)	595, 613, 1102, 1279, 1358, 1438
BstYI	RGATCY	6 cut(s)	595, 613, 1102, 1279, 1358, 1438
Bsu15I	ATCGAT	1 cut(s)	120
BsuI	GTATCC	2 cut(s)	1491, 1826
BsuRI	GGCC	3 cut(s)	537, 1059, 1266
BsuTUI	ATCGAT	1 cut(s)	120
BtgI	CCRYGG	1 cut(s)	1061
BtgZI	GCGATG	1 cut(s)	2005
BtsCI	GGATG	6 cut(s)	265, 406, 428, 656, 743, 1239
BtsI	GCAGTG	1 cut(s)	1122
BtsIMutI	CAGTG	8 cut(s)	182, 336, 466, 811, 904, 1122, 1209, 1599
BveI	ACCTGC	1 cut(s)	531
Cac8I	GCNNGC	7 cut(s)	47, 202, 577, 683, 687, 1404, 1932
CaiI	CAGNNNCTG	1 cut(s)	2018
CfoI	GCGC	3 cut(s)	51, 230, 303
Cfr13I	GGNCC	1 cut(s)	1058
ClaI	ATCGAT	1 cut(s)	120
Csp6I	GTAC	2 cut(s)	1097, 1768
CviAII	CATG	3 cut(s)	502, 1062, 1870
CviQI	GTAC	2 cut(s)	1097, 1768
DpnI	GATC	9 cut(s)	123, 458, 597, 615, 1104, 1281, 1360, 1440, 2033
DpnII	GATC	9 cut(s)	121, 456, 595, 613, 1102, 1279, 1358, 1438, 2031
EaeI	YGGCCR	1 cut(s)	535
Eam1104I	CTCTTC	4 cut(s)	7, 160, 1542, 1822
EarI	CTCTTC	4 cut(s)	7, 160, 1542, 1822
EciI	GGCGGA	1 cut(s)	882
Ecl136II	GAGCTC	1 cut(s)	316
Eco130I	CCWWGG	1 cut(s)	1061
Eco24I	GRGCYC	2 cut(s)	194, 318
Eco31I	GGTCTC	1 cut(s)	429
Eco32I	GATATC	2 cut(s)	118, 1374
Eco53kI	GAGCTC	1 cut(s)	316
Eco88I	CYCGRG	1 cut(s)	1524
EcoICRI	GAGCTC	1 cut(s)	316
EcoNI	CCTNNNNNAGG	1 cut(s)	1366
EcoRV	GATATC	2 cut(s)	118, 1374
EcoT14I	CCWWGG	1 cut(s)	1061
EcoT22I	ATGCAT	1 cut(s)	1147
EcoT38I	GRGCYC	2 cut(s)	194, 318
ErhI	CCWWGG	1 cut(s)	1061
FaeI	CATG	3 cut(s)	505, 1065, 1873
FaqI	GGGAC	3 cut(s)	127, 761, 1375
FatI	CATG	3 cut(s)	501, 1061, 1869
FblI	GTMKAC	1 cut(s)	1716
Fnu4HI	GCNGC	4 cut(s)	214, 393, 538, 1799
FokI	GGATG	6 cut(s)	272, 413, 415, 663, 750, 1226
FriOI	GRGCYC	2 cut(s)	194, 318
Fsp4HI	GCNGC	4 cut(s)	214, 393, 538, 1799
FspBI	CTAG	7 cut(s)	273, 311, 686, 1335, 1736, 1916, 2004
GlaI	GCGC	3 cut(s)	50, 229, 302
GluI	GCNGC	4 cut(s)	214, 393, 538, 1799
GsaI	CCCAGC	1 cut(s)	301
HaeII	RGCGCY	2 cut(s)	52, 231
HaeIII	GGCC	3 cut(s)	537, 1059, 1266
HapII	CCGG	2 cut(s)	146, 1652
HhaI	GCGC	3 cut(s)	51, 230, 303
Hin1II	CATG	3 cut(s)	505, 1065, 1873
Hin6I	GCGC	3 cut(s)	49, 228, 301
HinP1I	GCGC	3 cut(s)	49, 228, 301
HincII	GTYRAC	1 cut(s)	421
HindII	GTYRAC	1 cut(s)	421
HindIII	AAGCTT	1 cut(s)	19
HpaII	CCGG	2 cut(s)	146, 1652
HphI	GGTGA	4 cut(s)	523, 560, 953, 1442
Hpy166II	GTNNAC	3 cut(s)	421, 1433, 1717
Hpy188I	TCNGA	9 cut(s)	643, 708, 1015, 1026, 1132, 1177, 1219, 1672, 1881
Hpy8I	GTNNAC	3 cut(s)	421, 1433, 1717
HpyAV	CCTTC	3 cut(s)	65, 143, 1976
HpyCH4III	ACNGT	6 cut(s)	369, 425, 956, 1213, 1848, 2066
HpyCH4IV	ACGT	2 cut(s)	937, 1225
HpyF10VI	GCNNNNNNNGC	3 cut(s)	210, 298, 1263
HpySE526I	ACGT	2 cut(s)	937, 1225
Hsp92II	CATG	3 cut(s)	505, 1065, 1873
HspAI	GCGC	3 cut(s)	49, 228, 301
Kzo9I	GATC	9 cut(s)	121, 456, 595, 613, 1102, 1279, 1358, 1438, 2031
LguI	GCTCTTC	1 cut(s)	160
LmnI	GCTCC	2 cut(s)	1687, 1864
Lsp1109I	GCAGC	3 cut(s)	225, 404, 1785
LweI	GCATC	6 cut(s)	641, 728, 1154, 1248, 1298, 1765
MaeI	CTAG	7 cut(s)	273, 311, 686, 1335, 1736, 1916, 2004
MaeII	ACGT	2 cut(s)	937, 1225
MaeIII	GTNAC	6 cut(s)	356, 481, 742, 794, 1911, 2078
MalI	GATC	9 cut(s)	123, 458, 597, 615, 1104, 1281, 1360, 1440, 2033
MboI	GATC	9 cut(s)	121, 456, 595, 613, 1102, 1279, 1358, 1438, 2031
MboII	GAAGA	9 cut(s)	24, 147, 1293, 1325, 1368, 1411, 1559, 1839, 2041
MfeI	CAATTG	1 cut(s)	1854
MflI	RGATCY	6 cut(s)	595, 613, 1102, 1279, 1358, 1438
MhlI	GDGCHC	4 cut(s)	194, 318, 1325, 1869
MlyI	GAGTC	6 cut(s)	129, 353, 1004, 1397, 1971, 2024
MmeI	TCCRAC	1 cut(s)	1508
Mph1103I	ATGCAT	1 cut(s)	1147
MroXI	GAANNNNTTC	2 cut(s)	955, 1808
MseI	TTAA	8 cut(s)	609, 657, 822, 1188, 1245, 1613, 2073, 2101
MslI	CAYNNNNRTG	2 cut(s)	185, 258
MspCI	CTTAAG	1 cut(s)	1244
MspI	CCGG	2 cut(s)	146, 1652
MspR9I	CCNGG	1 cut(s)	146
MunI	CAATTG	1 cut(s)	1854
MwoI	GCNNNNNNNGC	3 cut(s)	210, 298, 1263
NciI	CCSGG	1 cut(s)	146
NcoI	CCATGG	1 cut(s)	1061
NdeII	GATC	9 cut(s)	121, 456, 595, 613, 1102, 1279, 1358, 1438, 2031
NheI	GCTAGC	1 cut(s)	685
NlaIII	CATG	3 cut(s)	505, 1065, 1873
NlaIV	GGNNCC	6 cut(s)	280, 468, 615, 1104, 1360, 1683
NmeAIII	GCCGAG	1 cut(s)	1424
NmuCI	GTSAC	3 cut(s)	356, 481, 794
NsiI	ATGCAT	1 cut(s)	1147
NspI	RCATGY	1 cut(s)	505
OliI	CACNNNNGTG	1 cut(s)	185
PaeR7I	CTCGAG	1 cut(s)	1524
PciI	ACATGT	1 cut(s)	501
PciSI	GCTCTTC	1 cut(s)	160
PdmI	GAANNNNTTC	2 cut(s)	955, 1808
PfeI	GAWTC	7 cut(s)	109, 514, 644, 875, 1580, 1634, 1673
PkrI	GCNGC	4 cut(s)	215, 394, 539, 1800
PleI	GAGTC	6 cut(s)	129, 353, 1003, 1396, 1970, 2023
PpsI	GAGTC	6 cut(s)	129, 353, 1003, 1396, 1970, 2023
Ppu21I	YACGTR	2 cut(s)	938, 1226
PscI	ACATGT	1 cut(s)	501
PshAI	GACNNNNGTC	1 cut(s)	139
Psp124BI	GAGCTC	1 cut(s)	318
PspFI	CCCAGC	1 cut(s)	297
PspN4I	GGNNCC	6 cut(s)	280, 468, 615, 1104, 1360, 1683
PspPI	GGNCC	1 cut(s)	1058
PstI	CTGCAG	1 cut(s)	394
PstNI	CAGNNNCTG	1 cut(s)	2018
PsuI	RGATCY	6 cut(s)	595, 613, 1102, 1279, 1358, 1438
RsaI	GTAC	2 cut(s)	1098, 1769
RsaNI	GTAC	2 cut(s)	1097, 1768
RseI	CAYNNNNRTG	2 cut(s)	185, 258
SacI	GAGCTC	1 cut(s)	318
SapI	GCTCTTC	1 cut(s)	160
SaqAI	TTAA	8 cut(s)	609, 657, 822, 1188, 1245, 1613, 2073, 2101
SatI	GCNGC	4 cut(s)	214, 393, 538, 1799
Sau3AI	GATC	9 cut(s)	121, 456, 595, 613, 1102, 1279, 1358, 1438, 2031
Sau96I	GGNCC	1 cut(s)	1058
ScaI	AGTACT	1 cut(s)	1098
SchI	GAGTC	6 cut(s)	129, 353, 1004, 1397, 1971, 2024
ScrFI	CCNGG	1 cut(s)	146
SduI	GDGCHC	4 cut(s)	194, 318, 1325, 1869
SfaNI	GCATC	6 cut(s)	641, 728, 1154, 1248, 1298, 1765
SfcI	CTRYAG	1 cut(s)	390
Sfr274I	CTCGAG	1 cut(s)	1524
SlaI	CTCGAG	1 cut(s)	1524
SmiMI	CAYNNNNRTG	2 cut(s)	185, 258
SmlI	CTYRAG	5 cut(s)	22, 589, 1244, 1524, 1751
SmoI	CTYRAG	5 cut(s)	22, 589, 1244, 1524, 1751
SsiI	CCGC	3 cut(s)	538, 893, 1385
SspMI	CTAG	7 cut(s)	273, 311, 686, 1335, 1736, 1916, 2004
SstI	GAGCTC	1 cut(s)	318
StyD4I	CCNGG	1 cut(s)	144
StyI	CCWWGG	1 cut(s)	1061
TaaI	ACNGT	6 cut(s)	369, 425, 956, 1213, 1848, 2066
TaiI	ACGT	2 cut(s)	940, 1228
TaqI	TCGA	5 cut(s)	120, 335, 993, 1007, 1525
TatI	WGTACW	1 cut(s)	1096
TauI	GCSGC	1 cut(s)	540
TfiI	GAWTC	7 cut(s)	109, 514, 644, 875, 1580, 1634, 1673
Tru1I	TTAA	8 cut(s)	609, 657, 822, 1188, 1245, 1613, 2073, 2101
Tru9I	TTAA	8 cut(s)	609, 657, 822, 1188, 1245, 1613, 2073, 2101
TscAI	CASTG	8 cut(s)	189, 336, 466, 811, 904, 1122, 1216, 1606
TseFI	GTSAC	3 cut(s)	356, 481, 794
TseI	GCWGC	3 cut(s)	213, 392, 1798
Tsp45I	GTSAC	3 cut(s)	356, 481, 794
TspGWI	ACGGA	2 cut(s)	1066, 2051
TspRI	CASTG	8 cut(s)	189, 336, 466, 811, 904, 1122, 1216, 1606
Vha464I	CTTAAG	1 cut(s)	1244
XagI	CCTNNNNNAGG	1 cut(s)	1366
XapI	RAATTY	6 cut(s)	338, 346, 727, 985, 1512, 1740
XbaI	TCTAGA	2 cut(s)	272, 310
XceI	RCATGY	1 cut(s)	505
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1989
XhoI	CTCGAG	1 cut(s)	1524
XmiI	GTMKAC	1 cut(s)	1716
XmnI	GAANNNNTTC	2 cut(s)	955, 1808
XspI	CTAG	7 cut(s)	273, 311, 686, 1335, 1736, 1916, 2004
ZrmI	AGTACT	1 cut(s)	1098
Zsp2I	ATGCAT	1 cut(s)	1147

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.