Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0002964

Physical Location & Seq

Genomic Coordinates Reverse (-)

40934407 .. 40943499

Gene Structure 9093 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG160900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2385 bp

ATGCTAAAGGGAAGAGAAAGCTTGAGCCGATTGGTGGGCAAACGCAGGCGCTTCCTTCCCAATCGTCATTCACTCCTCTCCGCCCCTACCACCACCCAGAGCTTATTGAATCTGGATATCGTTCCAAATGGCACACTCGTGTCCCCGGAAGGCTCTTCAAATCAAGACGAACAAGAAAACACACTGGCGGGCTCTGTTGCTTGCCCTGTTTGCAGCGTCAGACTCAGCGCCCAAAACAACACCATCAATTCTCATCTGGATGAGTGTCTATCTAGAGGAACCAAACGAAAGCTAACCCAGCGCACACTTCTAGAGCTCAACTTCTGCCCAGTGTCGAAGATTCAAAATTTTTCCTGTGACTCTAAACAGTTTGGAAATGATTTGTTTCCTGCAGCTCGGGATGAAAGTCGAAATCAGGTTGACAGTCCATCCAGAGACCCAATCAATAAGGACGAGATCAGTGAGGTGCCAGATTTTGATGTGACCATCACTCAGGACGACATGTATGGGGTGATTCTTGAAACTTTTATTGTTGGCCGCAGGTTTGGTGATCAAACTGAGTTATATCTTGGTGCAAGCATTTTTCTCTCAAGAGATCCTGATAATGTTAAGGATCCTAACGCTATCAAGGTTGTTTATTCAGATTCGGGATGCCTTAAAATGCTTGGCTTTCTCCCTCGCAAGCTAGCTGAGTATTTGTCTCCTCTGATAGACCAGTATAGTCTAAATTTTGAGGGATGCGTTACCTCTGTTCCCAAGCGTTCTATTGATGTTGTCCCAATACAGATAGTGTGTCACAAGACCAGTGATAATAAGGACTTTAATGATGACAAGGTTTTCAAATGTTTATGGAGAAATGCTCAGCAAGTAATTGAATCTACAAAGTCCTGTCCGCCCAGTGCAATAAAATATCAGGATAACTTTTGTGTTTTCATACGTGAGGTTTTGAGAAACAGTTCTCACCTCTTGACAGATGATGAAAAGAATTTCATCAAGTCGTTTACTTCGATGTCAGATGATAGTCAGAGGCTATTTGTTCGGCTTTATACACGGAAAGGCCCATGGTTTCGGCTGTCTGCTATTTCATACCCAGAAGTACTGGATCCCCAACAAGCAGTGAAAGAGCTATCTGGTAATAGAATACCATCAGTTGGACATTCTGTATGTTTCAAAATTCAGATTCAGGTTGATGGCAAATTTGTTTGTGATATTGCAGAGACAGGGTATGCATCTTGCTTTGAAATTACAAATAAACTATCTGATGATTGTATTAAGGAGATTTTGGATTTGCTCACTGTATCTGAGCTACGTGAAATCTTGTGCATCCTTAAGCAGAGTTGCAATCGTGGCCTAAGAAAGCAGGATCTCATTGCATCTCTTATATCTTCTTACGATGAAGATTTGTGCCCATTACTACCTAGTATGGTTTTGCACAGAACAGGATCCTGTGTTAGGATATCTTCAAATGCGGAGTCCCTTATCTGGCGTGCTGAGAGGCTTTTCTTCCTGAATGGTGAACAGGATCTCTCGGCATTTCTACTGGTGGATTTGGGAATAGTCAAGTATCCAACTTACAAGTGCATAGTCTCACAACAAATTTTCTCTGCTCGAGATGATTTGCTTGGCTATGAAGAGGCTATTGAAGTGGCACAAATAGTTGATGAAGCTCTTGATGGAAGCAACACTGGATTGATCTTAAAGTGCATAAAGATAGCTGATTCCCATTTATCCAATCCGGTTCAATCCTTGACCTCTGAATCAATGGCTCCATTCCTTTCCCACTTTTCAGCTACATTTGTCTACTCAAAAGTGGTTTTACTAGGAATTTCTTTTCTTGAGCGTGAGCATAGGTACAATGATGCTATCTATTTACTGAAAAGGCTGCTGAATTGTTTCGCTCGTGATGGTAGAAGAGGATACTGGACACTACGGTTATCAATTGATTTGGAGCACATGGGCTATCTGAATGAGAGCCTTTTGGTTGCTGAAAATGGGTTACTAGATGAATGGGTGCGTGCTGGTTCAAGAGTGGCACTTCAAAGGAGAGTCCTTCGCTTGGGAAAACCACCGAGGCGATGGAAAACTCCTAGTTTTGCAGAGTCTGTCAAGAGGAAGATCATGGAGTTAGGTAAATGTTCCAGGGAGACCTTTAAATTGTGCAATTGGCACAAAGAGCAGGTTTTATGGAGAAGATGGGGAGCAATGCGGTGTAGAGCAGCTAGCTCTGCAATATTATGCCGAGGAAGGTGGATGGCAGGGTGTTCATACAGAGAGTGGCATTTGGTTGACTATTTTTGGACTTCTTATGTGGGATATTATATTTTCCAATGTACCAAATGTCTTCCGCACCAGATTTCAGACTGCTCCCTTGGATTTAGAGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000280 GO:0003674 GO:0003676 GO:0003677 GO:0003824 GO:0004518 GO:0004519 GO:0004520 GO:0004527 GO:0004536 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006281 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007049 GO:0007059 GO:0007127 GO:0007129 GO:0008150 GO:0008152 GO:0008409 GO:0009987 GO:0016043 GO:0016787 GO:0016788 GO:0016888 GO:0016893 GO:0017108 GO:0022402 GO:0022414 GO:0033554 GO:0034641 GO:0036297 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0045132 GO:0045143 GO:0046483 GO:0048256 GO:0048285 GO:0050896 GO:0051276 GO:0051321 GO:0051716 GO:0061982 GO:0070192 GO:0070336 GO:0071704 GO:0071840 GO:0090304 GO:0090305 GO:0097159 GO:0098813 GO:0140013 GO:0140097 GO:1901360 GO:1901363 GO:1903046

KEGG Pathways

Metabolic & Signaling

ko03460 map03460

Pfam Domains

Protein Families

HIRAN VRR_NUC

Protein Analysis

794

Amino Acids

90.29

Weight (kDa)

8.1

Isoelectric Point (pI)

44.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HIRAN	PF08797	173 - 254	3.1e-14	HIRAN domain
FAN1_HTH	PF21315	304 - 377	3.2e-16	FAN1, HTH domain
FAN1_TPR	PF21170	539 - 686	2.1e-13	Fanconi-associated nuclease 1, TPR domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002964)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G48360 AT1G48360 AT1G48360 AT1G48360 AT1G48360 AT1G48360
fragaria_vesca	FvH4_4g12370 FvH4_4g12370 FvH4_4g12370 FvH4_4g12370 FvH4_4g12370 FvH4_4g12370 FvH4_4g12370 FvH4_4g12370
malus_domestica	MD00G1163900.v1.1 MD09G1250200.v1.1 MD09G1250400.v1.1
prunus_persica	Prupe.1G176700_v2.0.a1 Prupe.1G176700_v2.0.a1 Prupe.1G176700_v2.0.a1 Prupe.1G176700_v2.0.a1 Prupe.1G176700_v2.0.a1
pyrus_communis	pycom04g02280 pycom13g29380
rosa_chinensis	RchiOBHm_Chr4g0410481
rosa_laevigata	RLG00000008424
rosa_multiflora	Rmu_sc0001969.1_g000008 Rmu_sc0016181.1_g000004
rosa_roxburghii	Rroxscaffold_5G00355290
rosa_rugosa	Rorug04G0114400
rosa_samantha	Rh4AG160900 Rh4BG160300 Rh4CG173100 Rh4DG156400
rosa_wichuraiana	Rw0G014390 Rw0G014400 Rw4G013420 Rw4G037760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	531, 2167
AccB1I	GGYRCC	1 cut(s)	466
AccB7I	CCANNNNNTGG	1 cut(s)	1151
AccI	GTMKAC	1 cut(s)	1800
AciI	CCGC	7 cut(s)	81, 188, 538, 893, 1469, 2206, 2345
AclWI	GGATC	9 cut(s)	590, 608, 621, 1097, 1110, 1371, 1437, 1450, 1530
AcoI	YGGCCR	1 cut(s)	535
AcsI	RAATTY	7 cut(s)	346, 727, 985, 1173, 1196, 1596, 1824
AfaI	GTAC	3 cut(s)	1098, 1853, 2332
AfiI	CCNNNNNNNGG	5 cut(s)	34, 1151, 1452, 1482, 2056
AflII	CTTAAG	1 cut(s)	1328
AflIII	ACRYGT	1 cut(s)	501
AjnI	CCWGG	1 cut(s)	2138
AleI	CACNNNNGTG	1 cut(s)	137
Alw21I	GWGCWC	2 cut(s)	318, 1953
Alw26I	GTCTC	6 cut(s)	429, 705, 1211, 1591, 2138, 2373
AlwI	GGATC	9 cut(s)	590, 608, 621, 1097, 1110, 1371, 1437, 1450, 1530
AlwNI	CAGNNNCTG	1 cut(s)	2102
Ama87I	CYCGRG	2 cut(s)	396, 1608
AoxI	GGCC	3 cut(s)	535, 1057, 1348
ApeKI	GCWGC	4 cut(s)	213, 392, 1882, 2216
ApoI	RAATTY	7 cut(s)	346, 727, 985, 1173, 1196, 1596, 1824
ArsI	GACNNNNNNTTYG	2 cut(s)	1457, 1489
Asp700I	GAANNNNTTC	2 cut(s)	955, 1892
AspLEI	GCGC	3 cut(s)	51, 230, 303
AspS9I	GGNCC	1 cut(s)	1058
AsuC2I	CCSGG	1 cut(s)	146
AsuHPI	GGTGA	4 cut(s)	523, 560, 953, 1526
AsuNHI	GCTAGC	2 cut(s)	685, 2219
AvaI	CYCGRG	2 cut(s)	396, 1608
BaeGI	GKGCMC	1 cut(s)	1409
BamHI	GGATCC	3 cut(s)	613, 1102, 1442
BanI	GGYRCC	1 cut(s)	466
BanII	GRGCYC	2 cut(s)	194, 318
BauI	CACGAG	2 cut(s)	137, 1899
BbsI	GAAGAC	1 cut(s)	2333
Bbv12I	GWGCWC	2 cut(s)	318, 1953
BbvI	GCAGC	4 cut(s)	225, 404, 1869, 2228
BciT130I	CCWGG	1 cut(s)	2140
BciVI	GTATCC	2 cut(s)	1575, 1910
BclI	TGATCA	1 cut(s)	550
BcnI	CCSGG	1 cut(s)	146
BcoDI	GTCTC	6 cut(s)	429, 705, 1211, 1591, 2138, 2373
BfaI	CTAG	8 cut(s)	273, 311, 686, 1419, 1820, 2000, 2088, 2220
BfmI	CTRYAG	1 cut(s)	390
BfoI	RGCGCY	2 cut(s)	52, 231
BfrI	CTTAAG	1 cut(s)	1328
BfuAI	ACCTGC	2 cut(s)	531, 2167
BfuI	GTATCC	2 cut(s)	1575, 1910
BisI	GCNGC	5 cut(s)	214, 393, 538, 1883, 2217
BlpI	GCTNAGC	1 cut(s)	861
BlsI	GCNGC	5 cut(s)	215, 394, 539, 1884, 2218
BmcAI	AGTACT	1 cut(s)	1098
Bme1390I	CCNGG	2 cut(s)	146, 2140
BmeT110I	CYCGRG	2 cut(s)	396, 1608
BmgT120I	GGNCC	1 cut(s)	1058
BmiI	GGNNCC	6 cut(s)	280, 468, 615, 1104, 1444, 1767
BmrFI	CCNGG	2 cut(s)	146, 2140
BmrI	ACTGGG	2 cut(s)	323, 891
BmsI	GCATC	6 cut(s)	641, 728, 1238, 1332, 1382, 1849
BmtI	GCTAGC	2 cut(s)	689, 2223
BmuI	ACTGGG	2 cut(s)	323, 891
BpiI	GAAGAC	1 cut(s)	2333
BplI	GAGNNNNNCTC	2 cut(s)	844, 876
Bpu1102I	GCTNAGC	1 cut(s)	861
BpuEI	CTTGAG	3 cut(s)	43, 574, 1856
BpuMI	CCSGG	1 cut(s)	146
BsaAI	YACGTR	2 cut(s)	938, 1310
BsaI	GGTCTC	2 cut(s)	429, 2138
BsaJI	CCNNGG	6 cut(s)	144, 1061, 2069, 2139, 2239, 2368
BsaWI	WCCGGW	1 cut(s)	1735
Bsc4I	CCNNNNNNNGG	5 cut(s)	34, 1151, 1452, 1482, 2056
Bse1I	ACTGG	9 cut(s)	189, 329, 715, 804, 897, 1104, 1545, 1690, 1925
Bse3DI	GCAATG	2 cut(s)	1368, 2208
BseBI	CCWGG	1 cut(s)	2140
BseDI	CCNNGG	6 cut(s)	144, 1061, 2069, 2139, 2239, 2368
BseGI	GGATG	7 cut(s)	265, 406, 428, 656, 743, 1323, 2256
BseLI	CCNNNNNNNGG	5 cut(s)	34, 1151, 1452, 1482, 2056
BseMI	GCAATG	2 cut(s)	1368, 2208
BseMII	CTCAG	7 cut(s)	238, 506, 549, 681, 875, 1293, 1482
BseNI	ACTGG	9 cut(s)	189, 329, 715, 804, 897, 1104, 1545, 1690, 1925
BseRI	GAGGAG	2 cut(s)	65, 693
BseSI	GKGCMC	1 cut(s)	1409
BseXI	GCAGC	4 cut(s)	225, 404, 1869, 2228
BseYI	CCCAGC	1 cut(s)	297
BshFI	GGCC	3 cut(s)	537, 1059, 1350
BshNI	GGYRCC	1 cut(s)	466
BsiHKAI	GWGCWC	2 cut(s)	318, 1953
BsiHKCI	CYCGRG	2 cut(s)	396, 1608
BsiSI	CCGG	2 cut(s)	146, 1736
BslFI	GGGAC	3 cut(s)	127, 761, 1459
BslI	CCNNNNNNNGG	5 cut(s)	34, 1151, 1452, 1482, 2056
BsmAI	GTCTC	6 cut(s)	429, 705, 1211, 1591, 2138, 2373
BsmFI	GGGAC	3 cut(s)	127, 761, 1459
BsnI	GGCC	3 cut(s)	537, 1059, 1350
Bso31I	GGTCTC	2 cut(s)	429, 2138
BsoBI	CYCGRG	2 cut(s)	396, 1608
Bsp1286I	GDGCHC	4 cut(s)	194, 318, 1409, 1953
Bsp1720I	GCTNAGC	1 cut(s)	861
Bsp19I	CCATGG	1 cut(s)	1061
BspACI	CCGC	7 cut(s)	81, 188, 538, 893, 1469, 2206, 2345
BspANI	GGCC	3 cut(s)	537, 1059, 1350
BspCNI	CTCAG	7 cut(s)	237, 505, 550, 682, 874, 1294, 1483
BspLI	GGNNCC	6 cut(s)	280, 468, 615, 1104, 1444, 1767
BspMAI	CTGCAG	1 cut(s)	394
BspMI	ACCTGC	2 cut(s)	531, 2167
BspOI	GCTAGC	2 cut(s)	689, 2223
BspPI	GGATC	9 cut(s)	590, 608, 621, 1097, 1110, 1371, 1437, 1450, 1530
BspQI	GCTCTTC	1 cut(s)	160
BspT107I	GGYRCC	1 cut(s)	466
BspTI	CTTAAG	1 cut(s)	1328
BspTNI	GGTCTC	2 cut(s)	429, 2138
BsrDI	GCAATG	2 cut(s)	1368, 2208
BsrI	ACTGG	9 cut(s)	189, 329, 715, 804, 897, 1104, 1545, 1690, 1925
BssECI	CCNNGG	6 cut(s)	144, 1061, 2069, 2139, 2239, 2368
BssSI	CACGAG	2 cut(s)	137, 1899
BssT1I	CCWWGG	2 cut(s)	1061, 2368
Bst2BI	CACGAG	2 cut(s)	137, 1899
Bst2UI	CCWGG	1 cut(s)	2140
Bst4CI	ACNGT	5 cut(s)	369, 425, 956, 1297, 1932
Bst6I	CTCTTC	4 cut(s)	7, 160, 1626, 1906
BstAFI	CTTAAG	1 cut(s)	1328
BstBAI	YACGTR	2 cut(s)	938, 1310
BstC8I	GCNNGC	9 cut(s)	47, 190, 202, 577, 683, 687, 1488, 2016, 2221
BstDEI	CTNAG	8 cut(s)	224, 492, 558, 690, 861, 1302, 1352, 1491
BstDSI	CCRYGG	1 cut(s)	1061
BstENI	CCTNNNNNAGG	1 cut(s)	1450
BstF5I	GGATG	7 cut(s)	265, 406, 428, 656, 743, 1323, 2256
BstH2I	RGCGCY	2 cut(s)	52, 231
BstHHI	GCGC	3 cut(s)	51, 230, 303
BstMAI	GTCTC	6 cut(s)	429, 705, 1211, 1591, 2138, 2373
BstMWI	GCNNNNNNNGC	5 cut(s)	210, 298, 1347, 2173, 2225
BstNI	CCWGG	1 cut(s)	2140
BstNSI	RCATGY	1 cut(s)	505
BstSCI	CCNGG	2 cut(s)	144, 2138
BstSFI	CTRYAG	1 cut(s)	390
BstSLI	GKGCMC	1 cut(s)	1409
BstV1I	GCAGC	4 cut(s)	225, 404, 1869, 2228
BstV2I	GAAGAC	1 cut(s)	2333
BstX2I	RGATCY	6 cut(s)	595, 613, 1102, 1363, 1442, 1522
BstYI	RGATCY	6 cut(s)	595, 613, 1102, 1363, 1442, 1522
BsuI	GTATCC	2 cut(s)	1575, 1910
BsuRI	GGCC	3 cut(s)	537, 1059, 1350
BtgI	CCRYGG	1 cut(s)	1061
BtgZI	GCGATG	1 cut(s)	2089
BtsCI	GGATG	7 cut(s)	265, 406, 428, 656, 743, 1323, 2256
BtsI	GCAGTG	1 cut(s)	1122
BtsIMutI	CAGTG	8 cut(s)	182, 336, 466, 811, 904, 1122, 1293, 1683
BveI	ACCTGC	2 cut(s)	531, 2167
Cac8I	GCNNGC	9 cut(s)	47, 190, 202, 577, 683, 687, 1488, 2016, 2221
CaiI	CAGNNNCTG	1 cut(s)	2102
CfoI	GCGC	3 cut(s)	51, 230, 303
Cfr13I	GGNCC	1 cut(s)	1058
CseI	GACGC	1 cut(s)	205
Csp6I	GTAC	3 cut(s)	1097, 1852, 2331
CviAII	CATG	4 cut(s)	502, 1062, 1954, 2119
CviQI	GTAC	3 cut(s)	1097, 1852, 2331
DdeI	CTNAG	8 cut(s)	224, 492, 558, 690, 861, 1302, 1352, 1491
DraI	TTTAAA	1 cut(s)	2152
EaeI	YGGCCR	1 cut(s)	535
Eam1104I	CTCTTC	4 cut(s)	7, 160, 1626, 1906
EarI	CTCTTC	4 cut(s)	7, 160, 1626, 1906
EciI	GGCGGA	2 cut(s)	70, 882
Ecl136II	GAGCTC	1 cut(s)	316
Eco130I	CCWWGG	2 cut(s)	1061, 2368
Eco24I	GRGCYC	2 cut(s)	194, 318
Eco31I	GGTCTC	2 cut(s)	429, 2138
Eco32I	GATATC	2 cut(s)	118, 1458
Eco53kI	GAGCTC	1 cut(s)	316
Eco88I	CYCGRG	2 cut(s)	396, 1608
EcoICRI	GAGCTC	1 cut(s)	316
EcoNI	CCTNNNNNAGG	1 cut(s)	1450
EcoRII	CCWGG	1 cut(s)	2138
EcoRV	GATATC	2 cut(s)	118, 1458
EcoT14I	CCWWGG	2 cut(s)	1061, 2368
EcoT22I	ATGCAT	1 cut(s)	1231
EcoT38I	GRGCYC	2 cut(s)	194, 318
ErhI	CCWWGG	2 cut(s)	1061, 2368
FaeI	CATG	4 cut(s)	505, 1065, 1957, 2122
FaqI	GGGAC	3 cut(s)	127, 761, 1459
FatI	CATG	4 cut(s)	501, 1061, 1953, 2118
FauI	CCCGC	1 cut(s)	181
FbaI	TGATCA	1 cut(s)	550
FblI	GTMKAC	1 cut(s)	1800
Fnu4HI	GCNGC	5 cut(s)	214, 393, 538, 1883, 2217
FokI	GGATG	7 cut(s)	272, 413, 415, 663, 750, 1310, 2263
FriOI	GRGCYC	2 cut(s)	194, 318
Fsp4HI	GCNGC	5 cut(s)	214, 393, 538, 1883, 2217
FspBI	CTAG	8 cut(s)	273, 311, 686, 1419, 1820, 2000, 2088, 2220
GlaI	GCGC	3 cut(s)	50, 229, 302
GluI	GCNGC	5 cut(s)	214, 393, 538, 1883, 2217
GsaI	CCCAGC	1 cut(s)	301
HaeII	RGCGCY	2 cut(s)	52, 231
HaeIII	GGCC	3 cut(s)	537, 1059, 1350
HapII	CCGG	2 cut(s)	146, 1736
HgaI	GACGC	1 cut(s)	205
HhaI	GCGC	3 cut(s)	51, 230, 303
Hin1II	CATG	4 cut(s)	505, 1065, 1957, 2122
Hin6I	GCGC	3 cut(s)	49, 228, 301
HinP1I	GCGC	3 cut(s)	49, 228, 301
HincII	GTYRAC	2 cut(s)	421, 2287
HindII	GTYRAC	2 cut(s)	421, 2287
HindIII	AAGCTT	1 cut(s)	19
HpaII	CCGG	2 cut(s)	146, 1736
HphI	GGTGA	4 cut(s)	523, 560, 953, 1526
Hpy166II	GTNNAC	5 cut(s)	421, 1002, 1517, 1801, 2287
Hpy8I	GTNNAC	5 cut(s)	421, 1002, 1517, 1801, 2287
HpyAV	CCTTC	4 cut(s)	65, 143, 2060, 2238
HpyCH4III	ACNGT	5 cut(s)	369, 425, 956, 1297, 1932
HpyCH4IV	ACGT	2 cut(s)	937, 1309
HpyF10VI	GCNNNNNNNGC	5 cut(s)	210, 298, 1347, 2173, 2225
HpyF3I	CTNAG	8 cut(s)	224, 492, 558, 690, 861, 1302, 1352, 1491
HpySE526I	ACGT	2 cut(s)	937, 1309
Hsp92II	CATG	4 cut(s)	505, 1065, 1957, 2122
HspAI	GCGC	3 cut(s)	49, 228, 301
Ksp22I	TGATCA	1 cut(s)	550
LguI	GCTCTTC	1 cut(s)	160
LmnI	GCTCC	4 cut(s)	1771, 1948, 2198, 2369
Lsp1109I	GCAGC	4 cut(s)	225, 404, 1869, 2228
LweI	GCATC	6 cut(s)	641, 728, 1238, 1332, 1382, 1849
MaeI	CTAG	8 cut(s)	273, 311, 686, 1419, 1820, 2000, 2088, 2220
MaeII	ACGT	2 cut(s)	937, 1309
MaeIII	GTNAC	5 cut(s)	356, 481, 742, 794, 1995
MfeI	CAATTG	2 cut(s)	1938, 2161
MflI	RGATCY	6 cut(s)	595, 613, 1102, 1363, 1442, 1522
MhlI	GDGCHC	4 cut(s)	194, 318, 1409, 1953
MlyI	GAGTC	5 cut(s)	216, 353, 1481, 2055, 2108
MmeI	TCCRAC	2 cut(s)	1132, 1592
Mph1103I	ATGCAT	1 cut(s)	1231
MroXI	GAANNNNTTC	2 cut(s)	955, 1892
MseI	TTAA	7 cut(s)	609, 657, 822, 1272, 1329, 1697, 2151
MslI	CAYNNNNRTG	2 cut(s)	137, 258
MspCI	CTTAAG	1 cut(s)	1328
MspI	CCGG	2 cut(s)	146, 1736
MspR9I	CCNGG	2 cut(s)	146, 2140
MunI	CAATTG	2 cut(s)	1938, 2161
MvaI	CCWGG	1 cut(s)	2140
MwoI	GCNNNNNNNGC	5 cut(s)	210, 298, 1347, 2173, 2225
NciI	CCSGG	1 cut(s)	146
NcoI	CCATGG	1 cut(s)	1061
NheI	GCTAGC	2 cut(s)	685, 2219
NlaIII	CATG	4 cut(s)	505, 1065, 1957, 2122
NlaIV	GGNNCC	6 cut(s)	280, 468, 615, 1104, 1444, 1767
NmeAIII	GCCGAG	2 cut(s)	1508, 2264
NmuCI	GTSAC	3 cut(s)	356, 481, 794
NsiI	ATGCAT	1 cut(s)	1231
NspI	RCATGY	1 cut(s)	505
OliI	CACNNNNGTG	1 cut(s)	137
PaeR7I	CTCGAG	1 cut(s)	1608
PciI	ACATGT	1 cut(s)	501
PciSI	GCTCTTC	1 cut(s)	160
PcsI	WCGNNNNNNNCGW	1 cut(s)	1004
PdmI	GAANNNNTTC	2 cut(s)	955, 1892
PfeI	GAWTC	8 cut(s)	109, 340, 514, 644, 875, 1180, 1718, 1757
PflMI	CCANNNNNTGG	1 cut(s)	1151
PkrI	GCNGC	5 cut(s)	215, 394, 539, 1884, 2218
PleI	GAGTC	5 cut(s)	216, 353, 1480, 2054, 2107
PpsI	GAGTC	5 cut(s)	216, 353, 1480, 2054, 2107
Ppu21I	YACGTR	2 cut(s)	938, 1310
PscI	ACATGT	1 cut(s)	501
Psp124BI	GAGCTC	1 cut(s)	318
Psp6I	CCWGG	1 cut(s)	2138
PspFI	CCCAGC	1 cut(s)	297
PspGI	CCWGG	1 cut(s)	2138
PspN4I	GGNNCC	6 cut(s)	280, 468, 615, 1104, 1444, 1767
PspPI	GGNCC	1 cut(s)	1058
PstI	CTGCAG	1 cut(s)	394
PstNI	CAGNNNCTG	1 cut(s)	2102
PsuI	RGATCY	6 cut(s)	595, 613, 1102, 1363, 1442, 1522
RsaI	GTAC	3 cut(s)	1098, 1853, 2332
RsaNI	GTAC	3 cut(s)	1097, 1852, 2331
RseI	CAYNNNNRTG	2 cut(s)	137, 258
SacI	GAGCTC	1 cut(s)	318
SapI	GCTCTTC	1 cut(s)	160
SaqAI	TTAA	7 cut(s)	609, 657, 822, 1272, 1329, 1697, 2151
SatI	GCNGC	5 cut(s)	214, 393, 538, 1883, 2217
Sau96I	GGNCC	1 cut(s)	1058
ScaI	AGTACT	1 cut(s)	1098
SchI	GAGTC	5 cut(s)	216, 353, 1481, 2055, 2108
ScrFI	CCNGG	2 cut(s)	146, 2140
SduI	GDGCHC	4 cut(s)	194, 318, 1409, 1953
SfaNI	GCATC	6 cut(s)	641, 728, 1238, 1332, 1382, 1849
SfcI	CTRYAG	1 cut(s)	390
Sfr274I	CTCGAG	1 cut(s)	1608
SlaI	CTCGAG	1 cut(s)	1608
SmiMI	CAYNNNNRTG	2 cut(s)	137, 258
SmlI	CTYRAG	5 cut(s)	22, 589, 1328, 1608, 1835
SmoI	CTYRAG	5 cut(s)	22, 589, 1328, 1608, 1835
SsiI	CCGC	7 cut(s)	81, 188, 538, 893, 1469, 2206, 2345
SspI	AATATT	1 cut(s)	2232
SspMI	CTAG	8 cut(s)	273, 311, 686, 1419, 1820, 2000, 2088, 2220
SstI	GAGCTC	1 cut(s)	318
StyD4I	CCNGG	2 cut(s)	144, 2138
StyI	CCWWGG	2 cut(s)	1061, 2368
TaaI	ACNGT	5 cut(s)	369, 425, 956, 1297, 1932
TaiI	ACGT	2 cut(s)	940, 1312
TaqI	TCGA	4 cut(s)	335, 409, 1007, 1609
TatI	WGTACW	1 cut(s)	1096
TauI	GCSGC	1 cut(s)	540
TfiI	GAWTC	8 cut(s)	109, 340, 514, 644, 875, 1180, 1718, 1757
Tru1I	TTAA	7 cut(s)	609, 657, 822, 1272, 1329, 1697, 2151
Tru9I	TTAA	7 cut(s)	609, 657, 822, 1272, 1329, 1697, 2151
TscAI	CASTG	8 cut(s)	189, 336, 466, 811, 904, 1122, 1300, 1690
TseFI	GTSAC	3 cut(s)	356, 481, 794
TseI	GCWGC	4 cut(s)	213, 392, 1882, 2216
Tsp45I	GTSAC	3 cut(s)	356, 481, 794
TspGWI	ACGGA	1 cut(s)	1066
TspRI	CASTG	8 cut(s)	189, 336, 466, 811, 904, 1122, 1300, 1690
Van91I	CCANNNNNTGG	1 cut(s)	1151
Vha464I	CTTAAG	1 cut(s)	1328
XagI	CCTNNNNNAGG	1 cut(s)	1450
XapI	RAATTY	7 cut(s)	346, 727, 985, 1173, 1196, 1596, 1824
XbaI	TCTAGA	2 cut(s)	272, 310
XceI	RCATGY	1 cut(s)	505
XcmI	CCANNNNNNNNNTGG	1 cut(s)	2073
XhoI	CTCGAG	1 cut(s)	1608
XmiI	GTMKAC	1 cut(s)	1800
XmnI	GAANNNNTTC	2 cut(s)	955, 1892
XspI	CTAG	8 cut(s)	273, 311, 686, 1419, 1820, 2000, 2088, 2220
ZrmI	AGTACT	1 cut(s)	1098
Zsp2I	ATGCAT	1 cut(s)	1231

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.