AT1G51340

Belongs to the multi antimicrobial extrusion (MATE) (TC 2.A.66.1) family

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
Physical Location & Seq
Forward (+)
19030998 .. 19035121
4124 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G51340.2

Sequence Viewer

Length: 1530 bp
ATGGCTACAACACAGATTTTCCAAGAAACCCTCTATACATTTTCTTTAGTGATTTCAGTTCTGAAATTTGATGAGCTCGGTTTAGAGATAGCGCGAATTGCTTTACCCGCAGCACTTGCTTTAACAGCTGATCCTATTGCATCTCTAGTTGACACAGCCTTCATAGGCCAAATTGGTCCTGTAGAGCTTGCTGCAGTTGGAGTTTCTATTGCTTTATTCAACCAAGTTTCAAGAATTGCTATTTTCCCACTTGTTAGCATCACAACTTCCTTTGTAGCAGAAGAAGATGCTTGTAGTTCTCAGCAAGACACAGTCCGAGATCATAAAGAATGTATTGAAATTGGTATCAACAATCCAACTGAGGAAACTATAGAATTGATTCCTGAAAAACATAAAGATTCTTTATCAGATGAATTTAAAACCAGTAGCAGTATCTTTAGTATTAGTAAACCTCCAGCCAAGAAAAGAAACATACCATCAGCTTCATCTGCTTTAATCATTGGAGGCGTTCTCGGCCTTTTTCAAGCCGTGTTTCTTATATCCGCAGCCAAACCTCTCTTGAGTTTCATGGGAGTAAAACACGATTCTCCAATGATGAGACCTTCTCAGAGATATCTATCTTTAAGATCACTTGGTGCACCAGCTGTTCTACTCTCACTTGCGGCACAAGGCGTTTTCCGCGGATTTAAAGACACGACAACTCCGTTATTCGCTACTGTGATTGGAGATGTAACAAACATAATACTCGACCCGATTTTCATATTTGTTTTCCGCCTAGGCGTAACAGGAGCAGCCACTGCTCATGTTATATCCCAATACCTTATGTGTGGAATACTCTTGTGGAAACTGATGGGTCAAGTTGATATCTTCAACATGAGTACCAAACATCTTCAGTTCTGTAGATTCATGAAAAATGGCTTTCTTTTGCTGATGAGAGTAATTGCAGTAACATTCTGTGTAACTCTCTCCGCGTCACTAGCTGCACGAGAAGGATCAACTTCCATGGCAGCTTTCCAAGTTTGCTTGCAGGTTTGGTTAGCTACTTCACTTCTTGCAGACGGGTACGCCGTAGCTGGCCAGGCAATACTAGCGAGCGCGTTTGCCAAAAAAGACTACAAAAGAGCAGCAGCTACCGCCTCTCGTGTACTGCAGTTGGGATTGGTTCTCGGTTTTGTACTTGCGGTTATACTTGGAGCAGGATTGCATTTTGGAGCAAGAGTGTTTACAAAAGACGATAAAGTTTTACACCTAATTAGCATAGGACTTCCGTTTGTGGCAGGGACACAACCAATTAATGCCTTAGCGTTTGTGTTCGATGGAGTTAACTTTGGAGCATCCGATTTCGGTTACGCCGCAGCTTCATTAGTAATGGTGGCTATAGTTAGCATCTTGTGTTTGCTCTTCCTCTCATCGACTCATGGTTTTATTGGACTTTGGTTTGGTCTCACCATTTACATGAGTCTTAGAGCAGCCGTTGGATTCTGGCGGATTGGGACAGGAACAGGACCTTGGTCTTTTCTTAGGAGCTGA

Protein Analysis

509

Amino Acids

54.52

Weight (kDa)

8.61

Isoelectric Point (pI)

35.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MatE PF01554 167 - 258 1.4e-11 MatE
MatE PF01554 317 - 469 1.1e-12 MatE
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1018
AccII CGCG 4 cut(s) 94, 681, 971, 1097
AclWI GGATC 2 cut(s) 125, 1000
AcoI YGGCCR 1 cut(s) 1075
AcsI RAATTY 2 cut(s) 65, 413
AcuI CTGAAG 1 cut(s) 875
AdeI CACNNNGTG 1 cut(s) 635
AfaI GTAC 4 cut(s) 880, 1064, 1146, 1176
AgsI TTSAA 5 cut(s) 220, 231, 338, 524, 871
AjnI CCWGG 1 cut(s) 1077
AjuI GAANNNNNNNTTGG 2 cut(s) 1492, 1524
Alw21I GWGCWC 2 cut(s) 78, 640
Alw26I GTCTC 2 cut(s) 592, 1448
Alw44I GTGCAC 1 cut(s) 636
AlwI GGATC 2 cut(s) 125, 1000
AlwNI CAGNNNCTG 1 cut(s) 797
AoxI GGCC 3 cut(s) 166, 514, 1075
ApaLI GTGCAC 1 cut(s) 636
ApoI RAATTY 2 cut(s) 65, 413
AseI ATTAAT 1 cut(s) 1293
Asp700I GAANNNNTTC 1 cut(s) 378
AspA2I CCTAGG 1 cut(s) 775
AspLEI GCGC 2 cut(s) 94, 1097
AspS9I GGNCC 2 cut(s) 176, 1505
AsuHPI GGTGA 1 cut(s) 1438
AvaII GGWCC 2 cut(s) 176, 1505
AvrII CCTAGG 1 cut(s) 775
BaeGI GKGCMC 1 cut(s) 640
BaeI ACNNNNGTAYC 2 cut(s) 862, 895
BalI TGGCCA 1 cut(s) 1077
BanII GRGCYC 1 cut(s) 78
BauI CACGAG 2 cut(s) 984, 1140
Bbv12I GWGCWC 2 cut(s) 78, 640
BccI CCATC 3 cut(s) 484, 844, 1310
BceAI ACGGC 3 cut(s) 512, 1052, 1457
BciT130I CCWGG 1 cut(s) 1079
BcoDI GTCTC 2 cut(s) 592, 1448
BfaI CTAG 4 cut(s) 146, 776, 977, 1088
BfmI CTRYAG 6 cut(s) 180, 192, 369, 898, 1148, 1377
BfuAI ACCTGC 1 cut(s) 1018
BlnI CCTAGG 1 cut(s) 775
Bme1390I CCNGG 1 cut(s) 1079
Bme18I GGWCC 2 cut(s) 176, 1505
BmgT120I GGNCC 2 cut(s) 176, 1505
BmrFI CCNGG 1 cut(s) 1079
BmsI GCATC 5 cut(s) 149, 267, 277, 1343, 1395
BoxI GACNNNNGTC 1 cut(s) 1510
BplI GAGNNNNNCTC 4 cut(s) 495, 527, 589, 621
BpmI CTGGAG 1 cut(s) 438
Bpu10I CCTNAGC 1 cut(s) 1300
BpuEI CTTGAG 1 cut(s) 580
BsaBI GATNNNNATC 1 cut(s) 616
BsaI GGTCTC 2 cut(s) 592, 1448
BsaJI CCNNGG 4 cut(s) 679, 775, 1002, 1508
BsaXI ACNNNNNCTCC 4 cut(s) 685, 715, 1203, 1233
Bse1I ACTGG 1 cut(s) 423
Bse8I GATNNNNATC 1 cut(s) 616
BseBI CCWGG 1 cut(s) 1079
BseDI CCNNGG 4 cut(s) 679, 775, 1002, 1508
BseGI GGATG 1 cut(s) 1334
BseJI GATNNNNATC 1 cut(s) 616
BseMII CTCAG 3 cut(s) 314, 351, 620
BseNI ACTGG 1 cut(s) 423
BseSI GKGCMC 1 cut(s) 640
BsgI GTGCAG 1 cut(s) 966
Bsh1236I CGCG 4 cut(s) 94, 681, 971, 1097
BshFI GGCC 3 cut(s) 168, 516, 1077
BsiHKAI GWGCWC 2 cut(s) 78, 640
BslFI GGGAC 2 cut(s) 1294, 1507
BsmAI GTCTC 2 cut(s) 592, 1448
BsmFI GGGAC 2 cut(s) 1294, 1507
BsnI GGCC 3 cut(s) 168, 516, 1077
Bso31I GGTCTC 2 cut(s) 592, 1448
Bsp1286I GDGCHC 2 cut(s) 78, 640
Bsp143I GATC 4 cut(s) 130, 319, 626, 992
Bsp19I CCATGG 1 cut(s) 1002
BspANI GGCC 3 cut(s) 168, 516, 1077
BspCNI CTCAG 3 cut(s) 313, 352, 619
BspFNI CGCG 4 cut(s) 94, 681, 971, 1097
BspHI TCATGA 1 cut(s) 906
BspMAI CTGCAG 2 cut(s) 196, 1152
BspMI ACCTGC 1 cut(s) 1018
BspPI GGATC 2 cut(s) 125, 1000
BspQI GCTCTTC 1 cut(s) 1406
BspTNI GGTCTC 2 cut(s) 592, 1448
BsrI ACTGG 1 cut(s) 423
BssECI CCNNGG 4 cut(s) 679, 775, 1002, 1508
BssMI GATC 4 cut(s) 130, 319, 626, 992
BssSI CACGAG 2 cut(s) 984, 1140
BssT1I CCWWGG 3 cut(s) 775, 1002, 1508
Bst2BI CACGAG 2 cut(s) 984, 1140
Bst2UI CCWGG 1 cut(s) 1079
Bst4CI ACNGT 2 cut(s) 313, 718
Bst6I CTCTTC 1 cut(s) 1406
BstAPI GCANNNNNTGC 2 cut(s) 116, 797
BstC8I GCNNGC 4 cut(s) 189, 1025, 1075, 1093
BstDEI CTNAG 6 cut(s) 300, 360, 606, 1300, 1463, 1520
BstDSI CCRYGG 2 cut(s) 679, 1002
BstF5I GGATG 1 cut(s) 1334
BstFNI CGCG 4 cut(s) 94, 681, 971, 1097
BstHHI GCGC 2 cut(s) 94, 1097
BstKTI GATC 4 cut(s) 133, 322, 629, 995
BstMAI GTCTC 2 cut(s) 592, 1448
BstMBI GATC 4 cut(s) 130, 319, 626, 992
BstNI CCWGG 1 cut(s) 1079
BstPAI GACNNNNGTC 1 cut(s) 1510
BstSCI CCNGG 1 cut(s) 1077
BstSFI CTRYAG 6 cut(s) 180, 192, 369, 898, 1148, 1377
BstSLI GKGCMC 1 cut(s) 640
BstUI CGCG 4 cut(s) 94, 681, 971, 1097
BsuRI GGCC 3 cut(s) 168, 516, 1077
BtgI CCRYGG 2 cut(s) 679, 1002
BtsCI GGATG 1 cut(s) 1334
BtsI GCAGTG 1 cut(s) 795
BtsIMutI CAGTG 1 cut(s) 795
BveI ACCTGC 1 cut(s) 1018
Cac8I GCNNGC 4 cut(s) 189, 1025, 1075, 1093
CaiI CAGNNNCTG 1 cut(s) 797
CciI TCATGA 1 cut(s) 906
CfoI GCGC 2 cut(s) 94, 1097
Cfr13I GGNCC 2 cut(s) 176, 1505
Cfr42I CCGCGG 1 cut(s) 682
CseI GACGC 1 cut(s) 960
Csp6I GTAC 4 cut(s) 879, 1063, 1145, 1175
CviAII CATG 7 cut(s) 568, 803, 874, 907, 1003, 1418, 1456
CviQI GTAC 4 cut(s) 879, 1063, 1145, 1175
DdeI CTNAG 6 cut(s) 300, 360, 606, 1300, 1463, 1520
DpnI GATC 4 cut(s) 132, 321, 628, 994
DpnII GATC 4 cut(s) 130, 319, 626, 992
DraI TTTAAA 2 cut(s) 418, 688
DraIII CACNNNGTG 1 cut(s) 635
EaeI YGGCCR 1 cut(s) 1075
Eam1104I CTCTTC 1 cut(s) 1406
EarI CTCTTC 1 cut(s) 1406
EciI GGCGGA 2 cut(s) 761, 1501
Ecl136II GAGCTC 1 cut(s) 76
Eco130I CCWWGG 3 cut(s) 775, 1002, 1508
Eco24I GRGCYC 1 cut(s) 78
Eco31I GGTCTC 2 cut(s) 592, 1448
Eco32I GATATC 2 cut(s) 614, 865
Eco47I GGWCC 2 cut(s) 176, 1505
Eco53kI GAGCTC 1 cut(s) 76
Eco57I CTGAAG 1 cut(s) 875
EcoICRI GAGCTC 1 cut(s) 76
EcoO109I RGGNCCY 1 cut(s) 1505
EcoRII CCWGG 1 cut(s) 1077
EcoRV GATATC 2 cut(s) 614, 865
EcoT14I CCWWGG 3 cut(s) 775, 1002, 1508
EcoT38I GRGCYC 1 cut(s) 78
ErhI CCWWGG 3 cut(s) 775, 1002, 1508
FaeI CATG 7 cut(s) 571, 806, 877, 910, 1006, 1421, 1459
FaqI GGGAC 2 cut(s) 1294, 1507
FatI CATG 7 cut(s) 567, 802, 873, 906, 1002, 1417, 1455
FauI CCCGC 1 cut(s) 115
FokI GGATG 1 cut(s) 1321
FriOI GRGCYC 1 cut(s) 78
FspBI CTAG 4 cut(s) 146, 776, 977, 1088
GlaI GCGC 2 cut(s) 93, 1096
GsuI CTGGAG 1 cut(s) 438
HaeIII GGCC 3 cut(s) 168, 516, 1077
HgaI GACGC 1 cut(s) 960
HhaI GCGC 2 cut(s) 94, 1097
Hin1II CATG 7 cut(s) 571, 806, 877, 910, 1006, 1421, 1459
Hin6I GCGC 2 cut(s) 92, 1095
HinP1I GCGC 2 cut(s) 92, 1095
HincII GTYRAC 2 cut(s) 151, 1324
HindII GTYRAC 2 cut(s) 151, 1324
HinfI GANTC 7 cut(s) 379, 398, 584, 903, 1414, 1459, 1479
HpaI GTTAAC 1 cut(s) 1324
HphI GGTGA 1 cut(s) 1438
Hpy166II GTNNAC 6 cut(s) 151, 449, 638, 1145, 1224, 1324
Hpy188I TCNGA 5 cut(s) 63, 317, 409, 609, 1339
Hpy188III TCNNGA 4 cut(s) 231, 383, 559, 907
Hpy8I GTNNAC 6 cut(s) 151, 449, 638, 1145, 1224, 1324
HpyAV CCTTC 3 cut(s) 169, 612, 983
HpyCH4III ACNGT 2 cut(s) 313, 718
HpyCH4V TGCA 9 cut(s) 140, 194, 638, 944, 983, 1027, 1055, 1150, 1204
HpyF3I CTNAG 6 cut(s) 300, 360, 606, 1300, 1463, 1520
Hsp92II CATG 7 cut(s) 571, 806, 877, 910, 1006, 1421, 1459
HspAI GCGC 2 cut(s) 92, 1095
KspAI GTTAAC 1 cut(s) 1324
KspI CCGCGG 1 cut(s) 682
Kzo9I GATC 4 cut(s) 130, 319, 626, 992
LguI GCTCTTC 1 cut(s) 1406
LmnI GCTCC 5 cut(s) 788, 1193, 1211, 1331, 1524
LweI GCATC 5 cut(s) 149, 267, 277, 1343, 1395
MaeI CTAG 4 cut(s) 146, 776, 977, 1088
MaeIII GTNAC 6 cut(s) 730, 781, 946, 958, 972, 1346
MalI GATC 4 cut(s) 132, 321, 628, 994
MboI GATC 4 cut(s) 130, 319, 626, 992
MboII GAAGA 5 cut(s) 293, 296, 859, 881, 1393
MhlI GDGCHC 2 cut(s) 78, 640
MlsI TGGCCA 1 cut(s) 1077
MluNI TGGCCA 1 cut(s) 1077
MlyI GAGTC 2 cut(s) 1408, 1468
MmeI TCCRAC 3 cut(s) 178, 380, 1456
MnlI CCTC 7 cut(s) 41, 355, 462, 497, 564, 1147, 1415
Mox20I TGGCCA 1 cut(s) 1077
MroXI GAANNNNTTC 1 cut(s) 378
MscI TGGCCA 1 cut(s) 1077
MseI TTAA 7 cut(s) 122, 417, 494, 623, 687, 1293, 1323
MslI CAYNNNNRTG 1 cut(s) 1454
Msp20I TGGCCA 1 cut(s) 1077
MspA1I CMGCKG 3 cut(s) 128, 644, 681
MspR9I CCNGG 1 cut(s) 1079
MvaI CCWGG 1 cut(s) 1079
MvnI CGCG 4 cut(s) 94, 681, 971, 1097
NcoI CCATGG 1 cut(s) 1002
NdeII GATC 4 cut(s) 130, 319, 626, 992
NlaIII CATG 7 cut(s) 571, 806, 877, 910, 1006, 1421, 1459
NmeAIII GCCGAG 1 cut(s) 492
NmuCI GTSAC 1 cut(s) 972
PagI TCATGA 1 cut(s) 906
PciSI GCTCTTC 1 cut(s) 1406
PcsI WCGNNNNNNNCGW 2 cut(s) 701, 1065
PdmI GAANNNNTTC 1 cut(s) 378
PfeI GAWTC 5 cut(s) 379, 398, 584, 903, 1479
PflFI GACNNNGTC 1 cut(s) 311
PleI GAGTC 2 cut(s) 1408, 1467
PpsI GAGTC 2 cut(s) 1408, 1467
PpuMI RGGWCCY 1 cut(s) 1505
PshAI GACNNNNGTC 1 cut(s) 1510
PshBI ATTAAT 1 cut(s) 1293
Psp124BI GAGCTC 1 cut(s) 78
Psp5II RGGWCCY 1 cut(s) 1505
Psp6I CCWGG 1 cut(s) 1077
PspGI CCWGG 1 cut(s) 1077
PspPI GGNCC 2 cut(s) 176, 1505
PspPPI RGGWCCY 1 cut(s) 1505
PstI CTGCAG 2 cut(s) 196, 1152
PstNI CAGNNNCTG 1 cut(s) 797
PsyI GACNNNGTC 1 cut(s) 311
PvuII CAGCTG 2 cut(s) 128, 644
RsaI GTAC 4 cut(s) 880, 1064, 1146, 1176
RsaNI GTAC 4 cut(s) 879, 1063, 1145, 1175
RseI CAYNNNNRTG 1 cut(s) 1454
SacI GAGCTC 1 cut(s) 78
SacII CCGCGG 1 cut(s) 682
SapI GCTCTTC 1 cut(s) 1406
SaqAI TTAA 7 cut(s) 122, 417, 494, 623, 687, 1293, 1323
Sau3AI GATC 4 cut(s) 130, 319, 626, 992
Sau96I GGNCC 2 cut(s) 176, 1505
SchI GAGTC 2 cut(s) 1408, 1468
ScrFI CCNGG 1 cut(s) 1079
SduI GDGCHC 2 cut(s) 78, 640
SfaNI GCATC 5 cut(s) 149, 267, 277, 1343, 1395
SfcI CTRYAG 6 cut(s) 180, 192, 369, 898, 1148, 1377
Sfr303I CCGCGG 1 cut(s) 682
SgrBI CCGCGG 1 cut(s) 682
SinI GGWCC 2 cut(s) 176, 1505
SmiMI CAYNNNNRTG 1 cut(s) 1454
SmlI CTYRAG 1 cut(s) 559
SmoI CTYRAG 1 cut(s) 559
SspMI CTAG 4 cut(s) 146, 776, 977, 1088
SstI GAGCTC 1 cut(s) 78
StyD4I CCNGG 1 cut(s) 1077
StyI CCWWGG 3 cut(s) 775, 1002, 1508
TaaI ACNGT 2 cut(s) 313, 718
TaqI TCGA 3 cut(s) 747, 1314, 1412
TatI WGTACW 2 cut(s) 1144, 1174
TauI GCSGC 2 cut(s) 665, 1355
TfiI GAWTC 5 cut(s) 379, 398, 584, 903, 1479
Tru1I TTAA 7 cut(s) 122, 417, 494, 623, 687, 1293, 1323
Tru9I TTAA 7 cut(s) 122, 417, 494, 623, 687, 1293, 1323
TscAI CASTG 1 cut(s) 802
TseFI GTSAC 1 cut(s) 972
Tsp45I GTSAC 1 cut(s) 972
TspDTI ATGAA 8 cut(s) 151, 426, 474, 556, 748, 895, 923, 1350
TspGWI ACGGA 2 cut(s) 693, 1257
TspRI CASTG 1 cut(s) 802
Tth111I GACNNNGTC 1 cut(s) 311
VneI GTGCAC 1 cut(s) 636
VpaK11BI GGWCC 2 cut(s) 176, 1505
VspI ATTAAT 1 cut(s) 1293
XapI RAATTY 2 cut(s) 65, 413
XmaJI CCTAGG 1 cut(s) 775
XmnI GAANNNNTTC 1 cut(s) 378
XspI CTAG 4 cut(s) 146, 776, 977, 1088
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.