Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0001107

Physical Location & Seq

Genomic Coordinates Forward (+)

16742782 .. 16744251

Gene Structure 1470 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G250300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 405 bp

ATGGCTGAAGAAAATGATTCATATTCCAATGGGAAGAAAAGCAAAACTTCTATCTACATTTTCTTGAAGGATTGCAGTGTCGCAACCTCTTTTGTTGCTGAAGAAGATACTATTGGAACTGCGAGTCCCAAGGCAAACCAGAGTGATTACCTGGAAACAGGTTTATCAATCAATGGTGAAACTAAACAGTTGATCCCAAAAAGGGGTACTGACCAGAATGCATACAACTCAAAACCAGTTGGTGCAAGCTTTGAAATAGTTACAACTAATCATCGAAAGAGGTACATCCCGTCTGTGTCACCAGCAATGGTAATTGGCAGCATCCTTGGCCTCATCCAAGCCATATTCCTCATATCAGCGGCAAAACCTCTATTGAACTTTATGGGGGTCAGTTTTGTAAGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005342 GO:0006810 GO:0006811 GO:0006820 GO:0006842 GO:0006855 GO:0008150 GO:0008509 GO:0008514 GO:0010035 GO:0010038 GO:0010044 GO:0015075 GO:0015137 GO:0015142 GO:0015238 GO:0015318 GO:0015711 GO:0015746 GO:0015849 GO:0015893 GO:0022857 GO:0034220 GO:0035674 GO:0042221 GO:0042493 GO:0042891 GO:0042895 GO:0046942 GO:0046943 GO:0050896 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0098656 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MatE

Protein Analysis

135

Amino Acids

14.44

Weight (kDa)

7.8

Isoelectric Point (pI)

27.05

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001107)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G51340 AT1G51340 AT1G51340 AT1G51340 AT1G51340
fragaria_vesca	FvH4_3g28870 FvH4_3g28870 FvH4_3g28870 FvH4_6g23370 FvH4_6g23370 FvH4_6g23370 FvH4_6g23370 FvH4_6g23370 FvH4_6g23370 FvH4_6g23370
malus_domestica	MD03G1175500.v1.1 MD11G1193400.v1.1
prunus_persica	Prupe.4G248800_v2.0.a1 Prupe.4G248800_v2.0.a1 Prupe.4G248800_v2.0.a1 Prupe.4G248800_v2.0.a1 Prupe.4G248800_v2.0.a1 Prupe.4G248800_v2.0.a1 Prupe.4G250300_v2.0.a1 Prupe.7G066100_v2.0.a1 Prupe.7G066100_v2.0.a1 Prupe.7G066100_v2.0.a1 Prupe.7G066100_v2.0.a1 Prupe.7G066100_v2.0.a1 Prupe.7G066100_v2.0.a1 Prupe.7G066100_v2.0.a1 Prupe.7G066100_v2.0.a1 Prupe.7G066100_v2.0.a1 Prupe.7G066100_v2.0.a1
pyrus_communis	pycom03g13300 pycom11g16890
rosa_chinensis	RchiOBHm_Chr3g0481351 RchiOBHm_Chr5g0052011
rosa_laevigata	RLG00000023404 RLG00000034848
rosa_multiflora	Rmu_sc0005445.1_g000002 Rmu_sc0018231.1_g000001 Rmu_ssc0000466.1_g000012
rosa_roxburghii	Rroxscaffold_1G00027790 Rroxscaffold_6G00400490
rosa_rugosa	Rorug03G0191300 Rorug03G0191400 Rorug05G0275600
rosa_samantha	Rh3AG242200 Rh3BG277400 Rh3CG272400 Rh3DG269200 Rh5AG347400 Rh5BG358300 Rh5CG383800 Rh5DG373800
rosa_wichuraiana	Rw0G002690 Rw3G021650 Rw5G032840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	359
AclWI	GGATC	1 cut(s)	187
AcuI	CTGAAG	2 cut(s)	27, 120
AfaI	GTAC	2 cut(s)	208, 284
AfiI	CCNNNNNNNGG	2 cut(s)	202, 203
AgsI	TTSAA	3 cut(s)	67, 254, 376
AjnI	CCWGG	1 cut(s)	150
AjuI	GAANNNNNNNTTGG	2 cut(s)	96, 128
AloI	GAACNNNNNNTCC	2 cut(s)	109, 141
AluBI	AGCT	1 cut(s)	249
AluI	AGCT	1 cut(s)	249
AlwI	GGATC	1 cut(s)	187
AoxI	GGCC	1 cut(s)	328
ApeKI	GCWGC	1 cut(s)	318
AsuHPI	GGTGA	2 cut(s)	188, 291
BbvI	GCAGC	1 cut(s)	330
BciT130I	CCWGG	1 cut(s)	152
BisI	GCNGC	2 cut(s)	319, 360
BlsI	GCNGC	2 cut(s)	320, 361
Bme1390I	CCNGG	1 cut(s)	152
BmrFI	CCNGG	1 cut(s)	152
BmsI	GCATC	1 cut(s)	330
BsaJI	CCNNGG	2 cut(s)	129, 325
Bsc4I	CCNNNNNNNGG	2 cut(s)	202, 203
Bse1I	ACTGG	1 cut(s)	236
Bse3DI	GCAATG	1 cut(s)	312
BseBI	CCWGG	1 cut(s)	152
BseDI	CCNNGG	2 cut(s)	129, 325
BseGI	GGATG	3 cut(s)	285, 321, 333
BseLI	CCNNNNNNNGG	2 cut(s)	202, 203
BseMI	GCAATG	1 cut(s)	312
BseNI	ACTGG	1 cut(s)	236
BseXI	GCAGC	1 cut(s)	330
BshFI	GGCC	1 cut(s)	330
BslFI	GGGAC	1 cut(s)	111
BslI	CCNNNNNNNGG	2 cut(s)	202, 203
BsmFI	GGGAC	1 cut(s)	111
BsmI	GAATGC	1 cut(s)	223
BsnI	GGCC	1 cut(s)	330
Bsp143I	GATC	1 cut(s)	192
BspACI	CCGC	1 cut(s)	359
BspANI	GGCC	1 cut(s)	330
BspPI	GGATC	1 cut(s)	187
BsrDI	GCAATG	1 cut(s)	312
BsrI	ACTGG	1 cut(s)	236
BssECI	CCNNGG	2 cut(s)	129, 325
BssMI	GATC	1 cut(s)	192
BssT1I	CCWWGG	2 cut(s)	129, 325
Bst2UI	CCWGG	1 cut(s)	152
Bst4CI	ACNGT	1 cut(s)	189
BstC8I	GCNNGC	1 cut(s)	247
BstF5I	GGATG	3 cut(s)	285, 321, 333
BstKTI	GATC	1 cut(s)	195
BstMBI	GATC	1 cut(s)	192
BstMWI	GCNNNNNNNGC	1 cut(s)	327
BstNI	CCWGG	1 cut(s)	152
BstSCI	CCNGG	1 cut(s)	150
BstV1I	GCAGC	1 cut(s)	330
BsuRI	GGCC	1 cut(s)	330
BtsCI	GGATG	3 cut(s)	285, 321, 333
BtsI	GCAGTG	1 cut(s)	82
BtsIMutI	CAGTG	1 cut(s)	82
Cac8I	GCNNGC	1 cut(s)	247
Csp6I	GTAC	2 cut(s)	207, 283
CviJI	RGCY	4 cut(s)	5, 249, 330, 341
CviKI_1	RGCY	4 cut(s)	5, 249, 330, 341
CviQI	GTAC	2 cut(s)	207, 283
DpnI	GATC	1 cut(s)	194
DpnII	GATC	1 cut(s)	192
Eco130I	CCWWGG	2 cut(s)	129, 325
Eco57I	CTGAAG	2 cut(s)	27, 120
EcoRII	CCWGG	1 cut(s)	150
EcoT14I	CCWWGG	2 cut(s)	129, 325
EcoT22I	ATGCAT	1 cut(s)	223
ErhI	CCWWGG	2 cut(s)	129, 325
FaiI	YATR	5 cut(s)	22, 223, 344, 353, 383
FalI	AAGNNNNNCTT	2 cut(s)	31, 63
FaqI	GGGAC	1 cut(s)	111
Fnu4HI	GCNGC	2 cut(s)	319, 360
FokI	GGATG	3 cut(s)	272, 308, 320
Fsp4HI	GCNGC	2 cut(s)	319, 360
GluI	GCNGC	2 cut(s)	319, 360
HaeIII	GGCC	1 cut(s)	330
HindIII	AAGCTT	1 cut(s)	247
HinfI	GANTC	2 cut(s)	17, 124
HphI	GGTGA	2 cut(s)	188, 291
Hpy188III	TCNNGA	1 cut(s)	64
HpyAV	CCTTC	1 cut(s)	61
HpyCH4III	ACNGT	1 cut(s)	189
HpyCH4V	TGCA	3 cut(s)	75, 221, 245
HpyF10VI	GCNNNNNNNGC	1 cut(s)	327
Kzo9I	GATC	1 cut(s)	192
LpnPI	CCDG	7 cut(s)	137, 144, 152, 164, 227, 249, 315
Lsp1109I	GCAGC	1 cut(s)	330
LweI	GCATC	1 cut(s)	330
MaeIII	GTNAC	2 cut(s)	259, 297
MalI	GATC	1 cut(s)	194
MboI	GATC	1 cut(s)	192
MboII	GAAGA	4 cut(s)	20, 46, 113, 116
MluCI	AATT	1 cut(s)	312
MlyI	GAGTC	1 cut(s)	133
MnlI	CCTC	5 cut(s)	97, 273, 341, 359, 378
Mph1103I	ATGCAT	1 cut(s)	223
MseI	TTAA	1 cut(s)	403
MspA1I	CMGCKG	1 cut(s)	359
MspR9I	CCNGG	1 cut(s)	152
Mva1269I	GAATGC	1 cut(s)	223
MvaI	CCWGG	1 cut(s)	152
MwoI	GCNNNNNNNGC	1 cut(s)	327
NdeII	GATC	1 cut(s)	192
NmuCI	GTSAC	1 cut(s)	297
NsiI	ATGCAT	1 cut(s)	223
PctI	GAATGC	1 cut(s)	223
PfeI	GAWTC	1 cut(s)	17
PkrI	GCNGC	2 cut(s)	320, 361
PleI	GAGTC	1 cut(s)	132
PpsI	GAGTC	1 cut(s)	132
Psp6I	CCWGG	1 cut(s)	150
PspGI	CCWGG	1 cut(s)	150
RsaI	GTAC	2 cut(s)	208, 284
RsaNI	GTAC	2 cut(s)	207, 283
SaqAI	TTAA	1 cut(s)	403
SatI	GCNGC	2 cut(s)	319, 360
Sau3AI	GATC	1 cut(s)	192
SchI	GAGTC	1 cut(s)	133
ScrFI	CCNGG	1 cut(s)	152
SetI	ASST	6 cut(s)	89, 153, 163, 251, 284, 370
SfaNI	GCATC	1 cut(s)	330
Sse9I	AATT	1 cut(s)	312
SsiI	CCGC	1 cut(s)	359
StyD4I	CCNGG	1 cut(s)	150
StyI	CCWWGG	2 cut(s)	129, 325
TaaI	ACNGT	1 cut(s)	189
TaqI	TCGA	1 cut(s)	274
TasI	AATT	1 cut(s)	312
TauI	GCSGC	1 cut(s)	362
TfiI	GAWTC	1 cut(s)	17
Tru1I	TTAA	1 cut(s)	403
Tru9I	TTAA	1 cut(s)	403
TscAI	CASTG	1 cut(s)	82
TseFI	GTSAC	1 cut(s)	297
TseI	GCWGC	1 cut(s)	318
Tsp45I	GTSAC	1 cut(s)	297
TspDTI	ATGAA	1 cut(s)	9
TspRI	CASTG	1 cut(s)	82
Zsp2I	ATGCAT	1 cut(s)	223

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.