Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0001107

Physical Location & Seq

Genomic Coordinates Reverse (-)

57317588 .. 57326295

Gene Structure 8708 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG347400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1155 bp

ATGTTCTTCAGCCTTTCATACCTCTGCACTCTCTGTTTCCAATATGCCATTAAGTGCTTACTGATCAAAAACCGAATATGTCTAGGATCTAATGCTTGGATTCTTTGTGCTATGATGGCCAGATATGTTTTTAAGTTGGACAAACTCGGTTTAGAAATAGCGTCGATTGCATTGCCTGCAGCACTTGCTTTGACAGCTGATCCAATCGCATCTCTAATCGACACAGCATTCATTGGACAAATAGGTTCAGTGGAGCTTGCTGCTGTAGGAGTATCAATTGCTTTGTTCAATCAAGTATCAAGAATCGCAATATTTCCACTTGTTAGTGTCACAACCTCTTTTGTTGCTGAAGAAGACACTATTGGTAGAGCGAGACCTGAAGAAAATGAGAACAGTCACCTGGAAACATGTTCACCAACGAATGGGGAAACTAAACAGTTGTTACCAGAAACTGATACTGGTAAGAATGCATACAACTCAAAACCGGTTGGTGTAAGCTTCGATATAGTTGCAACCGGTCATAAAAAAAGGTATATCCCATCAGCATCATCAGCAATGGTTATTGGCGGAATTCTTGGATTTATTCAAGCCATATTCCTCATATCTGGAGCAAAACCTCTATTGAACTTCATGGGAGTCAACTCTGATTCCCCAATGCTCAAGCCAGCACAACAGTACTTGATGTTGAGGTCGCTCGGTGCTCCTGCGGTTCTTCTTTCACTGGCTATGCAAGGAGTCTTCCGTGGGTTCAAGGATACAAAAACTCCTTTATTTGCCACTGTGGTCGGAGATGCAACAAATATAATTTTAGATCCAATATTTATATTCGTTTTTCATCTCGGTGTGAATGGTGCAGCTATTGCCCATGTTATATCTCAGTACTTAATGTCAGTCATCCTCTTTTGGAGATTAATAGCTCATGTTGATCTCTTACCCCCAAGTGTTGAACATCTCCAATTTGGTCGATTTCTTAAAAATGGTTTTCTATTATTGATGAGGGTCATTGCGGTTACATTCTGCGTGACCCTGGCTGCATCATTGGCTGCACGCCAGGGACCAACATCCATGGCTGCATTTCAGGTCTGCTTGCAAGTTTGGTTGGCAACATCTCTTCTAGCTGACGGACTGGCTGTTGCAGGACAGGTTAGAAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005342 GO:0006810 GO:0006811 GO:0006820 GO:0006842 GO:0006855 GO:0008150 GO:0008509 GO:0008514 GO:0010035 GO:0010038 GO:0010044 GO:0015075 GO:0015137 GO:0015142 GO:0015238 GO:0015318 GO:0015711 GO:0015746 GO:0015849 GO:0015893 GO:0022857 GO:0034220 GO:0035674 GO:0042221 GO:0042493 GO:0042891 GO:0042895 GO:0046942 GO:0046943 GO:0050896 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0098656 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MatE

Protein Analysis

384

Amino Acids

41.29

Weight (kDa)

8.59

Isoelectric Point (pI)

25.42

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MatE	PF01554	174 - 273	2.2e-11	MatE

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001107)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G51340 AT1G51340 AT1G51340 AT1G51340 AT1G51340
fragaria_vesca	FvH4_3g28870 FvH4_3g28870 FvH4_3g28870 FvH4_6g23370 FvH4_6g23370 FvH4_6g23370 FvH4_6g23370 FvH4_6g23370 FvH4_6g23370 FvH4_6g23370
malus_domestica	MD03G1175500.v1.1 MD11G1193400.v1.1
prunus_persica	Prupe.4G248800_v2.0.a1 Prupe.4G248800_v2.0.a1 Prupe.4G248800_v2.0.a1 Prupe.4G248800_v2.0.a1 Prupe.4G248800_v2.0.a1 Prupe.4G248800_v2.0.a1 Prupe.4G250300_v2.0.a1 Prupe.7G066100_v2.0.a1 Prupe.7G066100_v2.0.a1 Prupe.7G066100_v2.0.a1 Prupe.7G066100_v2.0.a1 Prupe.7G066100_v2.0.a1 Prupe.7G066100_v2.0.a1 Prupe.7G066100_v2.0.a1 Prupe.7G066100_v2.0.a1 Prupe.7G066100_v2.0.a1 Prupe.7G066100_v2.0.a1
pyrus_communis	pycom03g13300 pycom11g16890
rosa_chinensis	RchiOBHm_Chr3g0481351 RchiOBHm_Chr5g0052011
rosa_laevigata	RLG00000023404 RLG00000034848
rosa_multiflora	Rmu_sc0005445.1_g000002 Rmu_sc0018231.1_g000001 Rmu_ssc0000466.1_g000012
rosa_roxburghii	Rroxscaffold_1G00027790 Rroxscaffold_6G00400490
rosa_rugosa	Rorug03G0191300 Rorug03G0191400 Rorug05G0275600
rosa_samantha	Rh3AG242200 Rh3BG277400 Rh3CG272400 Rh3DG269200 Rh5AG347400 Rh5BG358300 Rh5CG383800 Rh5DG373800
rosa_wichuraiana	Rw0G002690 Rw3G021650 Rw5G032840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	422
AciI	CCGC	3 cut(s)	567, 707, 1007
AclWI	GGATC	3 cut(s)	94, 194, 806
AcoI	YGGCCR	1 cut(s)	117
AcsI	RAATTY	1 cut(s)	570
AcuI	CTGAAG	2 cut(s)	369, 399
AfaI	GTAC	2 cut(s)	677, 881
AfiI	CCNNNNNNNGG	1 cut(s)	422
AflIII	ACRYGT	1 cut(s)	407
AgeI	ACCGGT	2 cut(s)	484, 515
AgsI	TTSAA	5 cut(s)	289, 587, 625, 751, 947
AjnI	CCWGG	3 cut(s)	399, 1026, 1050
AjuI	GAANNNNNNNTTGG	2 cut(s)	345, 377
AluBI	AGCT	6 cut(s)	197, 256, 498, 857, 917, 1118
AluI	AGCT	6 cut(s)	197, 256, 498, 857, 917, 1118
Alw21I	GWGCWC	1 cut(s)	703
Alw26I	GTCTC	1 cut(s)	367
AlwI	GGATC	3 cut(s)	94, 194, 806
AlwNI	CAGNNNCTG	1 cut(s)	452
AoxI	GGCC	1 cut(s)	117
ApeKI	GCWGC	6 cut(s)	179, 260, 854, 1031, 1043, 1070
ApoI	RAATTY	1 cut(s)	570
AseI	ATTAAT	1 cut(s)	911
AsiGI	ACCGGT	2 cut(s)	484, 515
AspS9I	GGNCC	1 cut(s)	1055
AsuHPI	GGTGA	2 cut(s)	389, 405
AvaII	GGWCC	1 cut(s)	1055
BalI	TGGCCA	1 cut(s)	119
BbsI	GAAGAC	2 cut(s)	360, 730
Bbv12I	GWGCWC	1 cut(s)	703
BbvI	GCAGC	6 cut(s)	191, 247, 866, 1018, 1030, 1057
BccI	CCATC	2 cut(s)	109, 547
BcgI	CGANNNNNNTGC	4 cut(s)	154, 188, 491, 525
BciT130I	CCWGG	3 cut(s)	401, 1028, 1052
BciVI	GTATCC	1 cut(s)	748
BclI	TGATCA	1 cut(s)	63
BcoDI	GTCTC	1 cut(s)	367
BfaI	CTAG	2 cut(s)	83, 1115
BfmI	CTRYAG	2 cut(s)	177, 264
BfuI	GTATCC	1 cut(s)	748
BisI	GCNGC	6 cut(s)	180, 261, 855, 1032, 1044, 1071
BlsI	GCNGC	6 cut(s)	181, 262, 856, 1033, 1045, 1072
BmcAI	AGTACT	2 cut(s)	677, 881
Bme1390I	CCNGG	3 cut(s)	401, 1028, 1052
Bme18I	GGWCC	1 cut(s)	1055
BmgT120I	GGNCC	1 cut(s)	1055
BmiI	GGNNCC	1 cut(s)	1056
BmrFI	CCNGG	3 cut(s)	401, 1028, 1052
BmsI	GCATC	4 cut(s)	218, 554, 781, 1043
BpiI	GAAGAC	2 cut(s)	360, 730
BpmI	CTGGAG	1 cut(s)	627
BpuEI	CTTGAG	1 cut(s)	644
BsaI	GGTCTC	1 cut(s)	367
BsaJI	CCNNGG	4 cut(s)	742, 1026, 1051, 1065
BsaWI	WCCGGW	2 cut(s)	484, 515
BsaXI	ACNNNNNCTCC	2 cut(s)	748, 778
Bsc4I	CCNNNNNNNGG	1 cut(s)	422
Bse118I	RCCGGY	2 cut(s)	484, 515
Bse1I	ACTGG	3 cut(s)	463, 726, 1131
Bse3DI	GCAATG	3 cut(s)	170, 561, 1002
BseBI	CCWGG	3 cut(s)	401, 1028, 1052
BseDI	CCNNGG	4 cut(s)	742, 1026, 1051, 1065
BseGI	GGATG	2 cut(s)	894, 1061
BseLI	CCNNNNNNNGG	1 cut(s)	422
BseMI	GCAATG	3 cut(s)	170, 561, 1002
BseMII	CTCAG	1 cut(s)	890
BseNI	ACTGG	3 cut(s)	463, 726, 1131
BseXI	GCAGC	6 cut(s)	191, 247, 866, 1018, 1030, 1057
BsgI	GTGCAG	3 cut(s)	10, 873, 1029
BshFI	GGCC	1 cut(s)	119
BshTI	ACCGGT	2 cut(s)	484, 515
BsiHKAI	GWGCWC	1 cut(s)	703
BsiSI	CCGG	2 cut(s)	485, 516
BslFI	GGGAC	1 cut(s)	1068
BslI	CCNNNNNNNGG	1 cut(s)	422
BsmAI	GTCTC	1 cut(s)	367
BsmFI	GGGAC	1 cut(s)	1068
BsmI	GAATGC	2 cut(s)	227, 472
BsnI	GGCC	1 cut(s)	119
Bso31I	GGTCTC	1 cut(s)	367
Bsp1286I	GDGCHC	1 cut(s)	703
Bsp143I	GATC	5 cut(s)	63, 86, 199, 811, 925
Bsp19I	CCATGG	1 cut(s)	1065
BspACI	CCGC	3 cut(s)	567, 707, 1007
BspANI	GGCC	1 cut(s)	119
BspCNI	CTCAG	1 cut(s)	889
BspLI	GGNNCC	1 cut(s)	1056
BspMAI	CTGCAG	1 cut(s)	181
BspPI	GGATC	3 cut(s)	94, 194, 806
BspTNI	GGTCTC	1 cut(s)	367
BsrDI	GCAATG	3 cut(s)	170, 561, 1002
BsrFI	RCCGGY	2 cut(s)	484, 515
BsrI	ACTGG	3 cut(s)	463, 726, 1131
BssAI	RCCGGY	2 cut(s)	484, 515
BssECI	CCNNGG	4 cut(s)	742, 1026, 1051, 1065
BssMI	GATC	5 cut(s)	63, 86, 199, 811, 925
BssT1I	CCWWGG	1 cut(s)	1065
Bst2UI	CCWGG	3 cut(s)	401, 1028, 1052
Bst4CI	ACNGT	4 cut(s)	395, 438, 675, 781
Bst6I	CTCTTC	1 cut(s)	1116
BstAPI	GCANNNNNTGC	3 cut(s)	176, 185, 860
BstC8I	GCNNGC	5 cut(s)	177, 258, 666, 1048, 1088
BstDEI	CTNAG	1 cut(s)	876
BstDSI	CCRYGG	2 cut(s)	742, 1065
BstF5I	GGATG	2 cut(s)	894, 1061
BstKTI	GATC	5 cut(s)	66, 89, 202, 814, 928
BstMAI	GTCTC	1 cut(s)	367
BstMBI	GATC	5 cut(s)	63, 86, 199, 811, 925
BstMWI	GCNNNNNNNGC	8 cut(s)	116, 167, 176, 185, 194, 551, 860, 1040
BstNI	CCWGG	3 cut(s)	401, 1028, 1052
BstNSI	RCATGY	1 cut(s)	411
BstSCI	CCNGG	3 cut(s)	399, 1026, 1050
BstSFI	CTRYAG	2 cut(s)	177, 264
BstV1I	GCAGC	6 cut(s)	191, 247, 866, 1018, 1030, 1057
BstV2I	GAAGAC	2 cut(s)	360, 730
BstX2I	RGATCY	2 cut(s)	86, 811
BstYI	RGATCY	2 cut(s)	86, 811
BsuI	GTATCC	1 cut(s)	748
BsuRI	GGCC	1 cut(s)	119
BtgI	CCRYGG	2 cut(s)	742, 1065
BtsCI	GGATG	2 cut(s)	894, 1061
BtsIMutI	CAGTG	3 cut(s)	255, 719, 777
Cac8I	GCNNGC	5 cut(s)	177, 258, 666, 1048, 1088
CaiI	CAGNNNCTG	1 cut(s)	452
Cfr10I	RCCGGY	2 cut(s)	484, 515
Cfr13I	GGNCC	1 cut(s)	1055
CseI	GACGC	1 cut(s)	150
Csp6I	GTAC	2 cut(s)	676, 880
CspAI	ACCGGT	2 cut(s)	484, 515
CviAII	CATG	5 cut(s)	408, 631, 866, 920, 1066
CviQI	GTAC	2 cut(s)	676, 880
DdeI	CTNAG	1 cut(s)	876
DpnI	GATC	5 cut(s)	65, 88, 201, 813, 927
DpnII	GATC	5 cut(s)	63, 86, 199, 811, 925
EaeI	YGGCCR	1 cut(s)	117
Eam1104I	CTCTTC	1 cut(s)	1116
EarI	CTCTTC	1 cut(s)	1116
EciI	GGCGGA	1 cut(s)	582
Eco130I	CCWWGG	1 cut(s)	1065
Eco31I	GGTCTC	1 cut(s)	367
Eco47I	GGWCC	1 cut(s)	1055
Eco57I	CTGAAG	2 cut(s)	369, 399
EcoRI	GAATTC	1 cut(s)	570
EcoRII	CCWGG	3 cut(s)	399, 1026, 1050
EcoT14I	CCWWGG	1 cut(s)	1065
EcoT22I	ATGCAT	1 cut(s)	472
ErhI	CCWWGG	1 cut(s)	1065
FaeI	CATG	5 cut(s)	411, 634, 869, 923, 1069
FaqI	GGGAC	1 cut(s)	1068
FatI	CATG	5 cut(s)	407, 630, 865, 919, 1065
FbaI	TGATCA	1 cut(s)	63
Fnu4HI	GCNGC	6 cut(s)	180, 261, 855, 1032, 1044, 1071
FokI	GGATG	2 cut(s)	881, 1048
Fsp4HI	GCNGC	6 cut(s)	180, 261, 855, 1032, 1044, 1071
FspBI	CTAG	2 cut(s)	83, 1115
GluI	GCNGC	6 cut(s)	180, 261, 855, 1032, 1044, 1071
GsuI	CTGGAG	1 cut(s)	627
HaeIII	GGCC	1 cut(s)	119
HapII	CCGG	2 cut(s)	485, 516
HgaI	GACGC	1 cut(s)	150
Hin1II	CATG	5 cut(s)	411, 634, 869, 923, 1069
HincII	GTYRAC	1 cut(s)	640
HindII	GTYRAC	1 cut(s)	640
HindIII	AAGCTT	1 cut(s)	496
HinfI	GANTC	5 cut(s)	100, 303, 636, 647, 735
HpaII	CCGG	2 cut(s)	485, 516
HphI	GGTGA	2 cut(s)	389, 405
Hpy166II	GTNNAC	2 cut(s)	413, 640
Hpy188I	TCNGA	2 cut(s)	646, 788
Hpy188III	TCNNGA	2 cut(s)	300, 606
Hpy8I	GTNNAC	2 cut(s)	413, 640
Hpy99I	CGWCG	1 cut(s)	166
HpyCH4III	ACNGT	4 cut(s)	395, 438, 675, 781
HpyF10VI	GCNNNNNNNGC	8 cut(s)	116, 167, 176, 185, 194, 551, 860, 1040
HpyF3I	CTNAG	1 cut(s)	876
Hsp92II	CATG	5 cut(s)	411, 634, 869, 923, 1069
Ksp22I	TGATCA	1 cut(s)	63
Kzo9I	GATC	5 cut(s)	63, 86, 199, 811, 925
LmnI	GCTCC	3 cut(s)	253, 608, 706
Lsp1109I	GCAGC	6 cut(s)	191, 247, 866, 1018, 1030, 1057
LweI	GCATC	4 cut(s)	218, 554, 781, 1043
MaeI	CTAG	2 cut(s)	83, 1115
MaeIII	GTNAC	5 cut(s)	328, 395, 441, 1009, 1021
MalI	GATC	5 cut(s)	65, 88, 201, 813, 927
MboI	GATC	5 cut(s)	63, 86, 199, 811, 925
MboII	GAAGA	6 cut(s)	362, 365, 392, 704, 730, 1103
MfeI	CAATTG	1 cut(s)	276
MflI	RGATCY	2 cut(s)	86, 811
MhlI	GDGCHC	1 cut(s)	703
MlsI	TGGCCA	1 cut(s)	119
MluCI	AATT	5 cut(s)	276, 570, 804, 956, 1150
MluNI	TGGCCA	1 cut(s)	119
MlyI	GAGTC	2 cut(s)	645, 744
MmeI	TCCRAC	2 cut(s)	117, 766
MnlI	CCTC	7 cut(s)	32, 346, 608, 627, 681, 908, 990
Mox20I	TGGCCA	1 cut(s)	119
Mph1103I	ATGCAT	1 cut(s)	472
MscI	TGGCCA	1 cut(s)	119
MseI	TTAA	6 cut(s)	51, 132, 884, 911, 972, 1153
MslI	CAYNNNNRTG	1 cut(s)	840
Msp20I	TGGCCA	1 cut(s)	119
MspA1I	CMGCKG	1 cut(s)	197
MspI	CCGG	2 cut(s)	485, 516
MspR9I	CCNGG	3 cut(s)	401, 1028, 1052
MunI	CAATTG	1 cut(s)	276
Mva1269I	GAATGC	2 cut(s)	227, 472
MvaI	CCWGG	3 cut(s)	401, 1028, 1052
MwoI	GCNNNNNNNGC	8 cut(s)	116, 167, 176, 185, 194, 551, 860, 1040
NcoI	CCATGG	1 cut(s)	1065
NdeII	GATC	5 cut(s)	63, 86, 199, 811, 925
NlaIII	CATG	5 cut(s)	411, 634, 869, 923, 1069
NlaIV	GGNNCC	1 cut(s)	1056
NmuCI	GTSAC	3 cut(s)	328, 395, 1021
NsiI	ATGCAT	1 cut(s)	472
NspI	RCATGY	1 cut(s)	411
PciI	ACATGT	1 cut(s)	407
PctI	GAATGC	2 cut(s)	227, 472
PfeI	GAWTC	3 cut(s)	100, 303, 647
PflMI	CCANNNNNTGG	1 cut(s)	422
PinAI	ACCGGT	2 cut(s)	484, 515
PkrI	GCNGC	6 cut(s)	181, 262, 856, 1033, 1045, 1072
PleI	GAGTC	2 cut(s)	644, 743
PpsI	GAGTC	2 cut(s)	644, 743
PscI	ACATGT	1 cut(s)	407
PshBI	ATTAAT	1 cut(s)	911
Psp6I	CCWGG	3 cut(s)	399, 1026, 1050
PspGI	CCWGG	3 cut(s)	399, 1026, 1050
PspN4I	GGNNCC	1 cut(s)	1056
PspPI	GGNCC	1 cut(s)	1055
PstI	CTGCAG	1 cut(s)	181
PstNI	CAGNNNCTG	1 cut(s)	452
PsuI	RGATCY	2 cut(s)	86, 811
PvuII	CAGCTG	1 cut(s)	197
RsaI	GTAC	2 cut(s)	677, 881
RsaNI	GTAC	2 cut(s)	676, 880
RseI	CAYNNNNRTG	1 cut(s)	840
SaqAI	TTAA	6 cut(s)	51, 132, 884, 911, 972, 1153
SatI	GCNGC	6 cut(s)	180, 261, 855, 1032, 1044, 1071
Sau3AI	GATC	5 cut(s)	63, 86, 199, 811, 925
Sau96I	GGNCC	1 cut(s)	1055
ScaI	AGTACT	2 cut(s)	677, 881
SchI	GAGTC	2 cut(s)	645, 744
ScrFI	CCNGG	3 cut(s)	401, 1028, 1052
SduI	GDGCHC	1 cut(s)	703
SfaNI	GCATC	4 cut(s)	218, 554, 781, 1043
SfcI	CTRYAG	2 cut(s)	177, 264
SinI	GGWCC	1 cut(s)	1055
SmiMI	CAYNNNNRTG	1 cut(s)	840
SmlI	CTYRAG	1 cut(s)	659
SmoI	CTYRAG	1 cut(s)	659
Sse9I	AATT	5 cut(s)	276, 570, 804, 956, 1150
SsiI	CCGC	3 cut(s)	567, 707, 1007
SspI	AATATT	2 cut(s)	312, 819
SspMI	CTAG	2 cut(s)	83, 1115
StyD4I	CCNGG	3 cut(s)	399, 1026, 1050
StyI	CCWWGG	1 cut(s)	1065
TaaI	ACNGT	4 cut(s)	395, 438, 675, 781
TaqI	TCGA	4 cut(s)	164, 219, 501, 964
TasI	AATT	5 cut(s)	276, 570, 804, 956, 1150
TatI	WGTACW	2 cut(s)	675, 879
TfiI	GAWTC	3 cut(s)	100, 303, 647
Tru1I	TTAA	6 cut(s)	51, 132, 884, 911, 972, 1153
Tru9I	TTAA	6 cut(s)	51, 132, 884, 911, 972, 1153
TscAI	CASTG	3 cut(s)	255, 726, 784
TseFI	GTSAC	3 cut(s)	328, 395, 1021
TseI	GCWGC	6 cut(s)	179, 260, 854, 1031, 1043, 1070
Tsp45I	GTSAC	3 cut(s)	328, 395, 1021
TspDTI	ATGAA	4 cut(s)	6, 220, 619, 824
TspGWI	ACGGA	2 cut(s)	731, 1137
TspRI	CASTG	3 cut(s)	255, 726, 784
Van91I	CCANNNNNTGG	1 cut(s)	422
VpaK11BI	GGWCC	1 cut(s)	1055
VspI	ATTAAT	1 cut(s)	911
XapI	RAATTY	1 cut(s)	570
XceI	RCATGY	1 cut(s)	411
XspI	CTAG	2 cut(s)	83, 1115
ZrmI	AGTACT	2 cut(s)	677, 881
Zsp2I	ATGCAT	1 cut(s)	472

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.