Rmu_sc0018231.1_g000001

Belongs to the multi antimicrobial extrusion (MATE) (TC 2.A.66.1) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0018231.1
OG0001107
Physical Location & Seq
Forward (+)
4066 .. 9858
5793 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0018231.1_g000001.1.cds

Sequence Viewer

Length: 1131 bp
atgggcaagatgcccctccttgtgttcttcaaagacacaaggaatgttttcaaagctgatgagctaggcgtggagatagtacatattgcacttcctacgctactagcgttagtagcagaccctgctgcttctctaattgacacagcgtttgttggccatataggtccagtggagctcgcagctgtgggaatttctattgctgttttcaatcaagtatcaaaaatagcaattttcccacttgtcagtattacaacctcttttgttgctgaagaagatactacggaaccattacgtactaaagaacaagtatatgaagaatttgaaaatgctacttctgtcaacaaggaaatggaagtactcaaaccacttgttgactctacaccatcatccatttccaatgatagtacagaaatggtcaaacttgagcatgtcagaaggcgtattccatctgcttcatcagcattggttattggcagcgtcctgggggttattcaaactctattccttatttttgctgcaaaccccatcctaaattacatgggggtagattctaattctcctatgttaagaccagcgagacaatacctgacactaaggtcacttggtgctcctgcagttcttctctctttggccatgcaaggggttttccgtggttttaaggatacaaaaactcctttatatgctacaattgtgggagatacagtaaacatcattttggacccaatattaatgtttgtactccatatgggcattaccggtgcggccattgcccatgttatctctcagtatttaatctccctgatactgttatggagattaaacaaacaagttgatctcctaaccccaggcatcaaagatctacgaattggccagtttctgaaaaatgggggtatgttattggtgagagttatagctgcaacattctgtgtcaccctggcagcatcattagctgcaaggcagggatcgacatcaatggcagcatttcaagtttgcttgcagatttggcttgcagcctctttgcttgcggatgggttagctgtggctggacaagcaatccttgcaagtgcatttgcaaggaaggatcacagcaaggtcgttgccacagcttcacgtgtattgcaggtggcttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
MatE

Protein Analysis

376

Amino Acids

40.32

Weight (kDa)

7.79

Isoelectric Point (pI)

34.6

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1111
AasI GACNNNNNNGTC 1 cut(s) 595
Acc36I ACCTGC 1 cut(s) 1111
AciI CCGC 2 cut(s) 761, 1025
AclWI GGATC 2 cut(s) 970, 1089
AcoI YGGCCR 4 cut(s) 154, 630, 762, 868
AcsI RAATTY 2 cut(s) 189, 317
AcuI CTGAAG 1 cut(s) 288
AcvI CACGTG 1 cut(s) 1112
AdeI CACNNNGTG 1 cut(s) 605
AfaI GTAC 5 cut(s) 81, 295, 357, 406, 738
AfiI CCNNNNNNNGG 1 cut(s) 639
AflIII ACRYGT 1 cut(s) 1111
AgeI ACCGGT 1 cut(s) 755
AgsI TTSAA 6 cut(s) 31, 52, 208, 323, 494, 986
AjnI CCWGG 3 cut(s) 480, 844, 933
AluBI AGCT 8 cut(s) 56, 64, 175, 182, 914, 950, 1037, 1106
AluI AGCT 8 cut(s) 56, 64, 175, 182, 914, 950, 1037, 1106
Alw21I GWGCWC 2 cut(s) 177, 610
Alw26I GTCTC 1 cut(s) 571
AlwI GGATC 2 cut(s) 970, 1089
AlwNI CAGNNNCTG 2 cut(s) 122, 877
AoxI GGCC 4 cut(s) 154, 630, 762, 868
ApeKI GCWGC 9 cut(s) 125, 179, 474, 515, 914, 938, 950, 977, 1010
ApoI RAATTY 2 cut(s) 189, 317
ArsI GACNNNNNNTTYG 2 cut(s) 131, 163
AseI ATTAAT 1 cut(s) 728
AsiGI ACCGGT 1 cut(s) 755
Asp700I GAANNNNTTC 1 cut(s) 47
AspS9I GGNCC 2 cut(s) 164, 718
AsuHPI GGTGA 2 cut(s) 913, 922
AvaII GGWCC 2 cut(s) 164, 718
BalI TGGCCA 3 cut(s) 156, 632, 870
BanII GRGCYC 1 cut(s) 177
BbrPI CACGTG 1 cut(s) 1112
Bbv12I GWGCWC 2 cut(s) 177, 610
BbvI GCAGC 9 cut(s) 112, 191, 486, 502, 901, 937, 950, 989, 1022
BccI CCATC 4 cut(s) 391, 454, 533, 1022
BciT130I CCWGG 3 cut(s) 482, 846, 935
BciVI GTATCC 1 cut(s) 655
BcoDI GTCTC 1 cut(s) 571
BfaI CTAG 2 cut(s) 65, 104
BfmI CTRYAG 1 cut(s) 612
BfuAI ACCTGC 1 cut(s) 1111
BfuI GTATCC 1 cut(s) 655
BglII AGATCT 1 cut(s) 856
BmcAI AGTACT 1 cut(s) 357
Bme1390I CCNGG 3 cut(s) 482, 846, 935
Bme18I GGWCC 2 cut(s) 164, 718
BmgT120I GGNCC 2 cut(s) 164, 718
BmiI GGNNCC 2 cut(s) 285, 720
BmrFI CCNGG 3 cut(s) 482, 846, 935
BmsI GCATC 2 cut(s) 858, 950
BpuEI CTTGAG 1 cut(s) 443
BsaAI YACGTR 2 cut(s) 293, 1112
BsaBI GATNNNNATC 1 cut(s) 967
BsaJI CCNNGG 4 cut(s) 481, 649, 844, 933
BsaWI WCCGGW 1 cut(s) 755
BsaXI ACNNNNNCTCC 4 cut(s) 655, 685, 687, 717
Bsc4I CCNNNNNNNGG 1 cut(s) 639
Bse118I RCCGGY 1 cut(s) 755
Bse1I ACTGG 2 cut(s) 167, 871
Bse3DI GCAATG 1 cut(s) 765
Bse8I GATNNNNATC 1 cut(s) 967
BseBI CCWGG 3 cut(s) 482, 846, 935
BseDI CCNNGG 4 cut(s) 481, 649, 844, 933
BseGI GGATG 3 cut(s) 386, 525, 1033
BseJI GATNNNNATC 1 cut(s) 967
BseLI CCNNNNNNNGG 1 cut(s) 639
BseMI GCAATG 1 cut(s) 765
BseMII CTCAG 1 cut(s) 797
BseNI ACTGG 2 cut(s) 167, 871
BseXI GCAGC 9 cut(s) 112, 191, 486, 502, 901, 937, 950, 989, 1022
BshFI GGCC 4 cut(s) 156, 632, 764, 870
BshTI ACCGGT 1 cut(s) 755
BsiHKAI GWGCWC 2 cut(s) 177, 610
BsiSI CCGG 1 cut(s) 756
BslI CCNNNNNNNGG 1 cut(s) 639
BsmAI GTCTC 1 cut(s) 571
BsnI GGCC 4 cut(s) 156, 632, 764, 870
Bsp1286I GDGCHC 2 cut(s) 177, 610
Bsp143I GATC 4 cut(s) 832, 856, 962, 1081
BspACI CCGC 2 cut(s) 761, 1025
BspANI GGCC 4 cut(s) 156, 632, 764, 870
BspCNI CTCAG 1 cut(s) 796
BspLI GGNNCC 2 cut(s) 285, 720
BspMAI CTGCAG 1 cut(s) 616
BspMI ACCTGC 1 cut(s) 1111
BspPI GGATC 2 cut(s) 970, 1089
BsrDI GCAATG 1 cut(s) 765
BsrFI RCCGGY 1 cut(s) 755
BsrI ACTGG 2 cut(s) 167, 871
BssAI RCCGGY 1 cut(s) 755
BssECI CCNNGG 4 cut(s) 481, 649, 844, 933
BssMI GATC 4 cut(s) 832, 856, 962, 1081
Bst2UI CCWGG 3 cut(s) 482, 846, 935
Bst4CI ACNGT 2 cut(s) 703, 807
BstAPI GCANNNNNTGC 2 cut(s) 122, 1058
BstBAI YACGTR 2 cut(s) 293, 1112
BstC8I GCNNGC 4 cut(s) 177, 995, 1008, 1023
BstDEI CTNAG 2 cut(s) 593, 783
BstDSI CCRYGG 1 cut(s) 649
BstF5I GGATG 3 cut(s) 386, 525, 1033
BstKTI GATC 4 cut(s) 835, 859, 965, 1084
BstMAI GTCTC 1 cut(s) 571
BstMBI GATC 4 cut(s) 832, 856, 962, 1081
BstMWI GCNNNNNNNGC 8 cut(s) 113, 122, 458, 767, 947, 1003, 1049, 1058
BstNI CCWGG 3 cut(s) 482, 846, 935
BstNSI RCATGY 1 cut(s) 431
BstSCI CCNGG 3 cut(s) 480, 844, 933
BstSFI CTRYAG 1 cut(s) 612
BstSNI TACGTA 1 cut(s) 293
BstV1I GCAGC 9 cut(s) 112, 191, 486, 502, 901, 937, 950, 989, 1022
BstX2I RGATCY 1 cut(s) 856
BstYI RGATCY 1 cut(s) 856
BsuI GTATCC 1 cut(s) 655
BsuRI GGCC 4 cut(s) 156, 632, 764, 870
BtgI CCRYGG 1 cut(s) 649
BtsCI GGATG 3 cut(s) 386, 525, 1033
BtsIMutI CAGTG 1 cut(s) 174
BveI ACCTGC 1 cut(s) 1111
Cac8I GCNNGC 4 cut(s) 177, 995, 1008, 1023
CaiI CAGNNNCTG 2 cut(s) 122, 877
Cfr10I RCCGGY 1 cut(s) 755
Cfr13I GGNCC 2 cut(s) 164, 718
CseI GACGC 1 cut(s) 466
Csp6I GTAC 5 cut(s) 80, 294, 356, 405, 737
CspAI ACCGGT 1 cut(s) 755
CviAII CATG 4 cut(s) 428, 538, 634, 773
CviQI GTAC 5 cut(s) 80, 294, 356, 405, 737
DdeI CTNAG 2 cut(s) 593, 783
DpnI GATC 4 cut(s) 834, 858, 964, 1083
DpnII GATC 4 cut(s) 832, 856, 962, 1081
DraIII CACNNNGTG 1 cut(s) 605
DrdI GACNNNNNNGTC 1 cut(s) 595
DseDI GACNNNNNNGTC 1 cut(s) 595
EaeI YGGCCR 4 cut(s) 154, 630, 762, 868
Ecl136II GAGCTC 1 cut(s) 175
Eco105I TACGTA 1 cut(s) 293
Eco24I GRGCYC 1 cut(s) 177
Eco47I GGWCC 2 cut(s) 164, 718
Eco53kI GAGCTC 1 cut(s) 175
Eco57I CTGAAG 1 cut(s) 288
Eco72I CACGTG 1 cut(s) 1112
EcoICRI GAGCTC 1 cut(s) 175
EcoRII CCWGG 3 cut(s) 480, 844, 933
EcoT38I GRGCYC 1 cut(s) 177
FaeI CATG 4 cut(s) 431, 541, 637, 776
FalI AAGNNNNNCTT 2 cut(s) 1041, 1073
FatI CATG 4 cut(s) 427, 537, 633, 772
FauNDI CATATG 1 cut(s) 744
FokI GGATG 3 cut(s) 373, 512, 1040
FriOI GRGCYC 1 cut(s) 177
FspBI CTAG 2 cut(s) 65, 104
HaeIII GGCC 4 cut(s) 156, 632, 764, 870
HapII CCGG 1 cut(s) 756
HgaI GACGC 1 cut(s) 466
Hin1II CATG 4 cut(s) 431, 541, 637, 776
HincII GTYRAC 2 cut(s) 340, 373
HindII GTYRAC 2 cut(s) 340, 373
HinfI GANTC 2 cut(s) 374, 548
HpaII CCGG 1 cut(s) 756
HphI GGTGA 2 cut(s) 913, 922
Hpy166II GTNNAC 3 cut(s) 340, 373, 706
Hpy188I TCNGA 2 cut(s) 434, 879
Hpy8I GTNNAC 3 cut(s) 340, 373, 706
HpyAV CCTTC 2 cut(s) 429, 1072
HpyCH4III ACNGT 2 cut(s) 703, 807
HpyCH4IV ACGT 2 cut(s) 292, 1111
HpyF10VI GCNNNNNNNGC 8 cut(s) 113, 122, 458, 767, 947, 1003, 1049, 1058
HpyF3I CTNAG 2 cut(s) 593, 783
HpySE526I ACGT 2 cut(s) 292, 1111
Hsp92II CATG 4 cut(s) 431, 541, 637, 776
Kzo9I GATC 4 cut(s) 832, 856, 962, 1081
LmnI GCTCC 2 cut(s) 172, 613
Lsp1109I GCAGC 9 cut(s) 112, 191, 486, 502, 901, 937, 950, 989, 1022
LweI GCATC 2 cut(s) 858, 950
MaeI CTAG 2 cut(s) 65, 104
MaeII ACGT 2 cut(s) 292, 1111
MaeIII GTNAC 2 cut(s) 597, 928
MalI GATC 4 cut(s) 834, 858, 964, 1083
MboI GATC 4 cut(s) 832, 856, 962, 1081
MboII GAAGA 5 cut(s) 19, 281, 284, 326, 611
MfeI CAATTG 1 cut(s) 687
MflI RGATCY 1 cut(s) 856
MhlI GDGCHC 2 cut(s) 177, 610
MlsI TGGCCA 3 cut(s) 156, 632, 870
MluCI AATT 8 cut(s) 135, 189, 228, 317, 532, 553, 687, 864
MluNI TGGCCA 3 cut(s) 156, 632, 870
MlyI GAGTC 1 cut(s) 368
MnlI CCTC 3 cut(s) 26, 265, 1024
Mox20I TGGCCA 3 cut(s) 156, 632, 870
MroXI GAANNNNTTC 1 cut(s) 47
MscI TGGCCA 3 cut(s) 156, 632, 870
MseI TTAA 6 cut(s) 566, 657, 728, 791, 818, 1129
Msp20I TGGCCA 3 cut(s) 156, 632, 870
MspA1I CMGCKG 1 cut(s) 182
MspI CCGG 1 cut(s) 756
MspR9I CCNGG 3 cut(s) 482, 846, 935
MunI CAATTG 1 cut(s) 687
MvaI CCWGG 3 cut(s) 482, 846, 935
MwoI GCNNNNNNNGC 8 cut(s) 113, 122, 458, 767, 947, 1003, 1049, 1058
NdeI CATATG 1 cut(s) 744
NdeII GATC 4 cut(s) 832, 856, 962, 1081
NlaIII CATG 4 cut(s) 431, 541, 637, 776
NlaIV GGNNCC 2 cut(s) 285, 720
NmuCI GTSAC 2 cut(s) 597, 928
NspI RCATGY 1 cut(s) 431
PaqCI CACCTGC 1 cut(s) 1111
PcsI WCGNNNNNNNCGW 1 cut(s) 104
PdmI GAANNNNTTC 1 cut(s) 47
PfeI GAWTC 1 cut(s) 548
PinAI ACCGGT 1 cut(s) 755
PleI GAGTC 1 cut(s) 368
PmaCI CACGTG 1 cut(s) 1112
PmlI CACGTG 1 cut(s) 1112
PpsI GAGTC 1 cut(s) 368
Ppu21I YACGTR 2 cut(s) 293, 1112
PshBI ATTAAT 1 cut(s) 728
Psp124BI GAGCTC 1 cut(s) 177
Psp6I CCWGG 3 cut(s) 480, 844, 933
PspCI CACGTG 1 cut(s) 1112
PspGI CCWGG 3 cut(s) 480, 844, 933
PspN4I GGNNCC 2 cut(s) 285, 720
PspPI GGNCC 2 cut(s) 164, 718
PstI CTGCAG 1 cut(s) 616
PstNI CAGNNNCTG 2 cut(s) 122, 877
PsuI RGATCY 1 cut(s) 856
PvuII CAGCTG 1 cut(s) 182
RsaI GTAC 5 cut(s) 81, 295, 357, 406, 738
RsaNI GTAC 5 cut(s) 80, 294, 356, 405, 737
SacI GAGCTC 1 cut(s) 177
SaqAI TTAA 6 cut(s) 566, 657, 728, 791, 818, 1129
Sau3AI GATC 4 cut(s) 832, 856, 962, 1081
Sau96I GGNCC 2 cut(s) 164, 718
ScaI AGTACT 1 cut(s) 357
SchI GAGTC 1 cut(s) 368
ScrFI CCNGG 3 cut(s) 482, 846, 935
SduI GDGCHC 2 cut(s) 177, 610
SfaNI GCATC 2 cut(s) 858, 950
SfcI CTRYAG 1 cut(s) 612
SinI GGWCC 2 cut(s) 164, 718
SmlI CTYRAG 1 cut(s) 422
SmoI CTYRAG 1 cut(s) 422
SnaBI TACGTA 1 cut(s) 293
Sse9I AATT 8 cut(s) 135, 189, 228, 317, 532, 553, 687, 864
SsiI CCGC 2 cut(s) 761, 1025
SspI AATATT 1 cut(s) 726
SspMI CTAG 2 cut(s) 65, 104
SstI GAGCTC 1 cut(s) 177
StyD4I CCNGG 3 cut(s) 480, 844, 933
TaaI ACNGT 2 cut(s) 703, 807
TaiI ACGT 2 cut(s) 295, 1114
TaqI TCGA 1 cut(s) 965
TasI AATT 8 cut(s) 135, 189, 228, 317, 532, 553, 687, 864
TatI WGTACW 4 cut(s) 79, 355, 404, 736
TauI GCSGC 1 cut(s) 764
TfiI GAWTC 1 cut(s) 548
Tru1I TTAA 6 cut(s) 566, 657, 728, 791, 818, 1129
Tru9I TTAA 6 cut(s) 566, 657, 728, 791, 818, 1129
TscAI CASTG 1 cut(s) 174
TseFI GTSAC 2 cut(s) 597, 928
TseI GCWGC 9 cut(s) 125, 179, 474, 515, 914, 938, 950, 977, 1010
Tsp45I GTSAC 2 cut(s) 597, 928
TspDTI ATGAA 2 cut(s) 327, 444
TspGWI ACGGA 2 cut(s) 296, 638
TspRI CASTG 1 cut(s) 174
VpaK11BI GGWCC 2 cut(s) 164, 718
VspI ATTAAT 1 cut(s) 728
XapI RAATTY 2 cut(s) 189, 317
XceI RCATGY 1 cut(s) 431
XmnI GAANNNNTTC 1 cut(s) 47
XspI CTAG 2 cut(s) 65, 104
ZrmI AGTACT 1 cut(s) 357
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.